Wall clock time and date at job start Mon Mar 30 2020 05:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46899 * 111.00167 * 2 1 4 4 H 1.09007 * 109.46477 * 324.99652 * 3 2 1 5 5 C 1.53002 * 109.47216 * 84.99538 * 3 2 1 6 6 C 1.52999 * 109.46786 * 180.02562 * 5 3 2 7 7 C 1.53000 * 109.47244 * 299.99839 * 6 5 3 8 8 C 1.53002 * 109.47098 * 60.00352 * 7 6 5 9 9 C 1.52999 * 109.46786 * 299.99929 * 8 7 6 10 10 H 1.09002 * 109.47710 * 300.00219 * 9 8 7 11 11 N 1.46508 * 109.47056 * 179.97438 * 9 8 7 12 12 S 1.65600 * 119.99756 * 94.99973 * 11 9 8 13 13 O 1.42093 * 106.40376 * 178.54297 * 12 11 9 14 14 O 1.42102 * 106.40379 * 311.46512 * 12 11 9 15 15 C 1.76205 * 107.21558 * 65.00205 * 12 11 9 16 16 H 1.07999 * 119.99910 * 0.02562 * 15 12 11 17 17 C 1.37880 * 119.99893 * 179.97438 * 15 12 11 18 18 N 1.31509 * 120.00035 * 180.02562 * 17 15 12 19 19 Si 1.86799 * 120.00024 * 0.02562 * 17 15 12 20 20 H 1.48501 * 109.47173 * 90.00084 * 19 17 15 21 21 H 1.48498 * 109.47113 * 210.00157 * 19 17 15 22 22 H 1.48502 * 109.47131 * 330.00002 * 19 17 15 23 23 H 1.09002 * 109.47401 * 300.00266 * 1 2 3 24 24 H 1.09001 * 109.46874 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46970 * 60.00412 * 1 2 3 26 26 H 1.00901 * 111.00367 * 236.04169 * 2 1 3 27 27 H 1.08995 * 109.47126 * 299.99880 * 5 3 2 28 28 H 1.08998 * 109.47253 * 60.00420 * 5 3 2 29 29 H 1.09006 * 109.47318 * 180.02562 * 6 5 3 30 30 H 1.09002 * 109.47889 * 60.00305 * 6 5 3 31 31 H 1.08998 * 109.47098 * 300.00221 * 7 6 5 32 32 H 1.08997 * 109.47640 * 180.02562 * 7 6 5 33 33 H 1.09001 * 109.47014 * 180.02562 * 8 7 6 34 34 H 1.08998 * 109.47253 * 59.99965 * 8 7 6 35 35 H 0.96993 * 120.00058 * 275.00817 * 11 9 8 36 36 H 0.97000 * 120.00324 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3397 2.0122 -0.5896 5 6 2.0608 1.8927 1.4370 6 6 2.6086 3.3212 1.4368 7 6 4.0118 3.3294 0.8271 8 6 3.9465 2.8081 -0.6099 9 6 3.3987 1.3795 -0.6097 10 1 4.0546 0.7389 -0.0203 11 7 3.3356 0.8806 -1.9858 12 16 4.5833 -0.0197 -2.5981 13 8 4.2098 -0.3750 -3.9222 14 8 5.7770 0.6873 -2.2906 15 6 4.6435 -1.5213 -1.6781 16 1 3.9338 -1.6963 -0.8831 17 6 5.5960 -2.4733 -1.9740 18 7 5.6406 -3.5943 -1.2877 19 14 6.8231 -2.1709 -3.3495 20 1 8.0264 -1.4962 -2.8000 21 1 7.2165 -3.4680 -3.9560 22 1 6.2018 -1.3080 -4.3862 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8901 26 1 1.8307 -0.5262 -0.7813 27 1 1.0611 1.8873 1.8712 28 1 2.7165 1.2518 2.0265 29 1 2.6555 3.6925 2.4606 30 1 1.9526 3.9619 0.8475 31 1 4.6678 2.6888 1.4165 32 1 4.4022 4.3470 0.8274 33 1 4.9462 2.8135 -1.0441 34 1 3.2905 3.4487 -1.1993 35 1 2.5630 1.0776 -2.5381 36 1 6.3105 -4.2642 -1.4960 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721906348.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:03 Heat of formation + Delta-G solvation = -122.570911 kcal Electronic energy + Delta-G solvation = -19253.776662 eV Core-core repulsion = 16283.710385 eV Total energy + Delta-G solvation = -2970.066277 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.23315 -37.65580 -36.47987 -35.70934 -35.21063 -35.00905 -30.62064 -29.37131 -28.52166 -25.70467 -23.24198 -22.37408 -21.40622 -20.55579 -19.40612 -18.56708 -17.85501 -17.01103 -16.33611 -16.00883 -15.71461 -15.51662 -15.30714 -14.95889 -14.85028 -14.33639 -14.01946 -13.65835 -13.48058 -13.40769 -13.23516 -12.92338 -12.69271 -12.57606 -12.46973 -12.17753 -12.04734 -11.89036 -11.64890 -11.40986 -11.31748 -11.22813 -10.92719 -10.22108 -9.31360 -8.92909 -7.47668 0.15401 1.05043 1.14281 1.21295 1.89650 2.44349 2.55667 3.25658 3.31829 3.68518 3.95992 4.09814 4.19725 4.30187 4.35771 4.41082 4.50064 4.53989 4.64316 4.69131 4.73999 4.91843 5.05246 5.05862 5.23193 5.26815 5.29856 5.37161 5.42178 5.46508 5.61284 6.07995 6.21085 6.26086 6.41012 6.58638 8.24280 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.024943 B = 0.007861 C = 0.007090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.302917 B = 3560.964851 C = 3948.105955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.711 5.711 3 C 0.089 3.911 4 H 0.063 0.937 5 C -0.105 4.105 6 C -0.112 4.112 7 C -0.118 4.118 8 C -0.136 4.136 9 C 0.151 3.849 10 H 0.070 0.930 11 N -1.107 6.107 12 S 2.697 3.303 13 O -1.032 7.032 14 O -1.028 7.028 15 C -1.032 5.032 16 H 0.113 0.887 17 C 0.111 3.889 18 N -0.851 5.851 19 Si 0.822 3.178 20 H -0.241 1.241 21 H -0.222 1.222 22 H -0.231 1.231 23 H 0.076 0.924 24 H 0.065 0.935 25 H 0.029 0.971 26 H 0.341 0.659 27 H 0.077 0.923 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.083 0.917 33 H 0.056 0.944 34 H 0.082 0.918 35 H 0.417 0.583 36 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.564 12.363 4.499 15.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.343 5.343 3 C -0.022 4.022 4 H 0.081 0.919 5 C -0.143 4.143 6 C -0.150 4.150 7 C -0.156 4.156 8 C -0.176 4.176 9 C 0.043 3.957 10 H 0.088 0.912 11 N -0.866 5.866 12 S 2.797 3.203 13 O -1.023 7.023 14 O -1.017 7.017 15 C -1.165 5.165 16 H 0.131 0.869 17 C -0.106 4.106 18 N -0.481 5.481 19 Si 0.640 3.360 20 H -0.165 1.165 21 H -0.144 1.144 22 H -0.154 1.154 23 H 0.095 0.905 24 H 0.084 0.916 25 H 0.047 0.953 26 H 0.160 0.840 27 H 0.096 0.904 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.251 0.749 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.734 12.310 4.616 15.253 hybrid contribution 0.006 -0.751 -1.184 1.402 sum -7.728 11.559 3.432 14.322 Atomic orbital electron populations 1.22293 0.86676 1.02178 1.00984 1.60439 1.08898 1.14019 1.50982 1.21850 0.93192 0.89548 0.97608 0.91868 1.21544 1.02005 0.96425 0.94363 1.21544 0.95643 0.95821 1.01947 1.21553 0.98163 1.01762 0.94166 1.22075 1.01584 0.94870 0.99031 1.21059 0.98189 0.96065 0.80363 0.91202 1.55180 1.38023 1.70361 1.23014 1.00541 0.72352 0.74628 0.72789 1.93434 1.83690 1.85184 1.39947 1.93378 1.47576 1.75015 1.85755 1.30937 1.26931 1.23316 1.35295 0.86868 1.25097 0.96129 0.93546 0.95820 1.70018 1.33287 1.06913 1.37893 0.87539 0.83119 0.83328 0.82047 1.16470 1.14440 1.15383 0.90523 0.91593 0.95294 0.84035 0.90434 0.92549 0.89963 0.90648 0.92610 0.89872 0.92497 0.89935 0.74898 0.90001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 10.50 127.69 1.34 1.98 16 2 N -0.71 -21.30 6.66 -514.59 -3.43 -24.73 16 3 C 0.09 2.37 2.10 44.92 0.09 2.46 16 4 H 0.06 1.45 7.80 -2.38 -0.02 1.43 16 5 C -0.10 -2.35 5.43 30.59 0.17 -2.18 16 6 C -0.11 -2.02 5.92 30.59 0.18 -1.84 16 7 C -0.12 -2.64 5.92 30.60 0.18 -2.46 16 8 C -0.14 -3.83 5.53 30.59 0.17 -3.66 16 9 C 0.15 4.94 2.22 44.99 0.10 5.04 16 10 H 0.07 2.72 7.85 -2.39 -0.02 2.70 16 11 N -1.11 -40.32 4.53 -169.37 -0.77 -41.08 16 12 S 2.70 132.10 4.15 -56.49 -0.23 131.86 16 13 O -1.03 -54.58 16.02 -128.00 -2.05 -56.63 16 14 O -1.03 -53.94 16.09 -128.00 -2.06 -56.00 16 15 C -1.03 -57.45 10.12 67.73 0.69 -56.77 16 16 H 0.11 6.44 8.06 -2.91 -0.02 6.42 16 17 C 0.11 6.38 5.47 84.66 0.46 6.84 16 18 N -0.85 -49.40 13.96 21.45 0.30 -49.10 16 19 Si 0.82 41.42 26.54 68.60 1.82 43.24 16 20 H -0.24 -11.84 7.11 99.48 0.71 -11.13 16 21 H -0.22 -9.92 7.11 99.48 0.71 -9.21 16 22 H -0.23 -11.98 5.61 99.48 0.56 -11.43 16 23 H 0.08 1.50 7.44 -2.39 -0.02 1.48 16 24 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.03 0.60 8.06 -2.38 -0.02 0.58 16 26 H 0.34 11.74 7.65 -89.69 -0.69 11.05 16 27 H 0.08 1.50 7.45 -2.39 -0.02 1.48 16 28 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 30 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.06 1.90 7.64 -2.39 -0.02 1.88 16 34 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.42 12.68 8.84 -96.75 -0.85 11.82 16 36 H 0.29 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -67.78 297.05 -3.65 -71.43 By element: Atomic # 1 Polarization: 32.19 SS G_CDS: -0.61 Total: 31.58 kcal Atomic # 6 Polarization: -53.96 SS G_CDS: 3.38 Total: -50.58 kcal Atomic # 7 Polarization: -111.01 SS G_CDS: -3.90 Total: -114.91 kcal Atomic # 8 Polarization: -108.52 SS G_CDS: -4.11 Total: -112.63 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 1.82 Total: 43.24 kcal Atomic # 16 Polarization: 132.10 SS G_CDS: -0.23 Total: 131.86 kcal Total: -67.78 -3.65 -71.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721906348.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.137 kcal (2) G-P(sol) polarization free energy of solvation -67.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds