Wall clock time and date at job start Mon Mar 30 2020 05:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46894 * 109.47125 * 2 1 4 4 C 1.46910 * 111.00033 * 176.05579 * 3 2 1 5 5 H 1.08999 * 109.46588 * 326.34565 * 4 3 2 6 6 C 1.53004 * 109.47092 * 206.35154 * 4 3 2 7 7 N 1.46502 * 109.47208 * 54.99706 * 6 4 3 8 8 S 1.65598 * 119.99607 * 164.99868 * 7 6 4 9 9 O 1.42103 * 106.39890 * 178.54010 * 8 7 6 10 10 O 1.42095 * 106.40477 * 311.45983 * 8 7 6 11 11 C 1.76199 * 107.21653 * 65.00525 * 8 7 6 12 12 H 1.07994 * 120.00098 * 359.97438 * 11 8 7 13 13 C 1.37884 * 119.99550 * 179.97438 * 11 8 7 14 14 N 1.31515 * 120.00171 * 359.97438 * 13 11 8 15 15 Si 1.86806 * 119.99553 * 179.97438 * 13 11 8 16 16 H 1.48494 * 109.46972 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46757 * 120.00176 * 15 13 11 18 18 H 1.48500 * 109.46872 * 239.99871 * 15 13 11 19 19 C 1.52994 * 109.46821 * 86.34990 * 4 3 2 20 20 C 1.53000 * 117.49638 * 252.64773 * 19 4 3 21 21 C 1.53007 * 117.49496 * 183.99387 * 19 4 3 22 22 H 1.09004 * 109.47418 * 179.97438 * 1 2 3 23 23 H 1.08991 * 109.47323 * 299.99827 * 1 2 3 24 24 H 1.09005 * 109.47215 * 59.99901 * 1 2 3 25 25 H 1.08998 * 109.47351 * 120.00404 * 2 1 3 26 26 H 1.09004 * 109.47089 * 239.99927 * 2 1 3 27 27 H 1.00899 * 110.99883 * 52.10842 * 3 2 1 28 28 H 1.08992 * 109.46676 * 175.00099 * 6 4 3 29 29 H 1.09001 * 109.46933 * 295.00185 * 6 4 3 30 30 H 0.96999 * 120.00070 * 345.00465 * 7 6 4 31 31 H 0.96993 * 119.99591 * 180.02562 * 14 13 11 32 32 H 1.08994 * 115.55145 * 38.32640 * 19 4 3 33 33 H 1.08998 * 117.50255 * 0.02562 * 20 19 4 34 34 H 1.09005 * 117.49502 * 145.02058 * 20 19 4 35 35 H 1.08994 * 117.49715 * 214.97882 * 21 19 4 36 36 H 1.08995 * 117.49818 * 0.02562 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 3.4851 1.4252 0.0943 5 1 3.8327 0.5933 0.7069 6 6 3.9189 2.7457 0.7340 7 7 3.2457 2.9072 2.0251 8 16 3.7882 4.0386 3.1059 9 8 2.9176 3.9723 4.2270 10 8 5.1946 3.8595 3.2023 11 6 3.5372 5.6216 2.3739 12 1 3.0985 5.6981 1.3900 13 6 3.9008 6.7626 3.0574 14 7 4.4345 6.6693 4.2557 15 14 3.6352 8.4408 2.2810 16 1 3.0232 8.2738 0.9385 17 1 2.7306 9.2461 3.1404 18 1 4.9404 9.1365 2.1476 19 6 4.0895 1.3144 -1.3068 20 6 4.7684 -0.0047 -1.6810 21 6 5.6141 1.2432 -1.4148 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 1.5947 1.9187 0.7434 28 1 4.9982 2.7387 0.8853 29 1 3.6493 3.5732 0.0777 30 1 2.4823 2.3515 2.2470 31 1 4.6899 7.4720 4.7366 32 1 3.5535 1.8455 -2.0933 33 1 4.7841 -0.7937 -0.9291 34 1 4.6792 -0.3413 -2.7139 35 1 6.0809 1.7270 -2.2727 36 1 6.1863 1.2748 -0.4877 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721907103.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:23 Heat of formation + Delta-G solvation = -73.857770 kcal Electronic energy + Delta-G solvation = -18407.951279 eV Core-core repulsion = 15439.997362 eV Total energy + Delta-G solvation = -2967.953917 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.68292 -35.67676 -35.21550 -34.00678 -33.93299 -33.05111 -30.23992 -26.89304 -26.11371 -23.01461 -22.23183 -22.09881 -19.94041 -18.96325 -17.51700 -16.36478 -16.16516 -15.65662 -15.32280 -14.79261 -14.57530 -14.02673 -13.91246 -13.78738 -13.14404 -12.95662 -12.21199 -12.01004 -11.94945 -11.50200 -11.45798 -11.32728 -11.26867 -11.22170 -11.04072 -10.56896 -10.48942 -10.29729 -10.24428 -10.19902 -9.78812 -9.24585 -9.02570 -8.50264 -8.41068 -6.69192 -5.30495 2.32654 3.06964 3.15338 3.23078 3.79881 4.07920 4.13063 4.62232 4.66205 4.89771 4.96745 5.07198 5.09381 5.21437 5.33371 5.42730 5.48070 5.64235 5.65338 5.75767 5.78972 5.93191 5.96016 6.04756 6.11810 6.14239 6.25672 6.34202 6.48891 6.77145 7.10042 7.33699 7.42907 7.82680 7.99846 8.90735 10.25077 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.021911 B = 0.005905 C = 0.005552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.594606 B = 4740.840480 C = 5042.159058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.054 3.946 3 N -0.684 5.684 4 C 0.111 3.889 5 H 0.051 0.949 6 C 0.126 3.874 7 N -1.140 6.140 8 S 2.716 3.284 9 O -1.008 7.008 10 O -1.007 7.007 11 C -1.018 5.018 12 H 0.104 0.896 13 C 0.132 3.868 14 N -0.846 5.846 15 Si 0.921 3.079 16 H -0.262 1.262 17 H -0.271 1.271 18 H -0.271 1.271 19 C -0.133 4.133 20 C -0.184 4.184 21 C -0.179 4.179 22 H 0.057 0.943 23 H 0.055 0.945 24 H 0.063 0.937 25 H 0.027 0.973 26 H 0.072 0.928 27 H 0.347 0.653 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.395 0.605 31 H 0.290 0.710 32 H 0.113 0.887 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.081 -10.484 -10.944 15.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.076 4.076 3 N -0.319 5.319 4 C -0.001 4.001 5 H 0.069 0.931 6 C -0.001 4.001 7 N -0.896 5.896 8 S 2.816 3.184 9 O -0.998 6.998 10 O -0.997 6.997 11 C -1.151 5.151 12 H 0.122 0.878 13 C -0.086 4.086 14 N -0.476 5.476 15 Si 0.745 3.255 16 H -0.186 1.186 17 H -0.197 1.197 18 H -0.196 1.196 19 C -0.153 4.153 20 C -0.221 4.221 21 C -0.217 4.217 22 H 0.076 0.924 23 H 0.074 0.926 24 H 0.082 0.918 25 H 0.045 0.955 26 H 0.090 0.910 27 H 0.168 0.832 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.227 0.773 31 H 0.100 0.900 32 H 0.131 0.869 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.471 -10.457 -10.643 15.124 hybrid contribution -0.527 0.769 0.143 0.943 sum -2.999 -9.688 -10.500 14.598 Atomic orbital electron populations 1.21800 0.95155 1.01544 1.02576 1.21975 0.95399 0.89762 1.00416 1.60451 1.05580 1.12512 1.53335 1.21295 0.87754 0.97341 0.93669 0.93148 1.21228 0.97708 0.96704 0.84470 1.56098 1.45398 1.56696 1.31373 1.00383 0.72642 0.73803 0.71611 1.93374 1.67954 1.88009 1.50453 1.93354 1.33026 1.87201 1.86093 1.30556 1.55840 1.13041 1.15689 0.87787 1.24759 0.89351 1.01224 0.93231 1.69906 1.33826 1.32778 1.11101 0.86127 0.78770 0.80568 0.80067 1.18553 1.19659 1.19634 1.22231 0.94247 1.00672 0.98110 1.22987 1.05508 0.91642 1.01968 1.23004 0.93576 1.01489 1.03622 0.92384 0.92638 0.91826 0.95458 0.90978 0.83200 0.89989 0.91084 0.77331 0.89968 0.86920 0.89273 0.89123 0.88624 0.88395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 10.13 37.16 0.38 -1.09 16 2 C 0.05 0.59 6.25 -3.83 -0.02 0.56 16 3 N -0.68 -8.82 6.33 -106.73 -0.68 -9.50 16 4 C 0.11 1.51 2.46 -67.71 -0.17 1.34 16 5 H 0.05 0.69 7.51 -51.93 -0.39 0.30 16 6 C 0.13 2.14 5.67 -4.04 -0.02 2.11 16 7 N -1.14 -22.09 5.69 -10.61 -0.06 -22.15 16 8 S 2.72 71.19 5.02 -107.50 -0.54 70.65 16 9 O -1.01 -29.34 18.02 -57.17 -1.03 -30.37 16 10 O -1.01 -29.18 17.49 -57.17 -1.00 -30.18 16 11 C -1.02 -27.80 9.72 30.60 0.30 -27.50 16 12 H 0.10 2.61 7.81 -52.49 -0.41 2.20 16 13 C 0.13 3.68 5.46 -17.82 -0.10 3.59 16 14 N -0.85 -24.91 13.19 55.43 0.73 -24.18 16 15 Si 0.92 20.60 29.54 -169.99 -5.02 15.58 16 16 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 17 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 18 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 19 C -0.13 -1.60 5.30 -90.62 -0.48 -2.08 16 20 C -0.18 -1.89 10.18 -26.70 -0.27 -2.16 16 21 C -0.18 -2.01 9.87 -26.69 -0.26 -2.28 16 22 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.03 0.30 7.96 -51.93 -0.41 -0.11 16 26 H 0.07 0.75 8.12 -51.93 -0.42 0.33 16 27 H 0.35 4.68 6.40 -39.29 -0.25 4.43 16 28 H 0.08 1.45 7.35 -51.93 -0.38 1.07 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.40 6.67 7.07 -34.47 -0.24 6.42 16 31 H 0.29 7.65 8.31 -40.82 -0.34 7.31 16 32 H 0.11 1.37 8.14 -51.93 -0.42 0.94 16 33 H 0.09 0.90 8.07 -51.93 -0.42 0.48 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.10 1.16 7.92 -51.93 -0.41 0.75 16 LS Contribution 315.15 15.07 4.75 4.75 Total: -1.00 -33.94 315.15 -8.93 -42.88 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -5.44 Total: 10.04 kcal Atomic # 6 Polarization: -26.86 SS G_CDS: -0.65 Total: -27.51 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: 0.00 Total: -55.84 kcal Atomic # 8 Polarization: -58.52 SS G_CDS: -2.03 Total: -60.55 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 71.19 SS G_CDS: -0.54 Total: 70.65 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.94 -8.93 -42.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721907103.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.982 kcal (2) G-P(sol) polarization free energy of solvation -33.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds