Wall clock time and date at job start Mon Mar 30 2020 05:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46894 * 109.47125 * 2 1 4 4 C 1.46910 * 111.00033 * 176.05579 * 3 2 1 5 5 H 1.08999 * 109.46588 * 326.34565 * 4 3 2 6 6 C 1.53004 * 109.47092 * 206.35154 * 4 3 2 7 7 N 1.46502 * 109.47208 * 54.99706 * 6 4 3 8 8 S 1.65598 * 119.99607 * 164.99868 * 7 6 4 9 9 O 1.42103 * 106.39890 * 178.54010 * 8 7 6 10 10 O 1.42095 * 106.40477 * 311.45983 * 8 7 6 11 11 C 1.76199 * 107.21653 * 65.00525 * 8 7 6 12 12 H 1.07994 * 120.00098 * 359.97438 * 11 8 7 13 13 C 1.37884 * 119.99550 * 179.97438 * 11 8 7 14 14 N 1.31515 * 120.00171 * 359.97438 * 13 11 8 15 15 Si 1.86806 * 119.99553 * 179.97438 * 13 11 8 16 16 H 1.48494 * 109.46972 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46757 * 120.00176 * 15 13 11 18 18 H 1.48500 * 109.46872 * 239.99871 * 15 13 11 19 19 C 1.52994 * 109.46821 * 86.34990 * 4 3 2 20 20 C 1.53000 * 117.49638 * 252.64773 * 19 4 3 21 21 C 1.53007 * 117.49496 * 183.99387 * 19 4 3 22 22 H 1.09004 * 109.47418 * 179.97438 * 1 2 3 23 23 H 1.08991 * 109.47323 * 299.99827 * 1 2 3 24 24 H 1.09005 * 109.47215 * 59.99901 * 1 2 3 25 25 H 1.08998 * 109.47351 * 120.00404 * 2 1 3 26 26 H 1.09004 * 109.47089 * 239.99927 * 2 1 3 27 27 H 1.00899 * 110.99883 * 52.10842 * 3 2 1 28 28 H 1.08992 * 109.46676 * 175.00099 * 6 4 3 29 29 H 1.09001 * 109.46933 * 295.00185 * 6 4 3 30 30 H 0.96999 * 120.00070 * 345.00465 * 7 6 4 31 31 H 0.96993 * 119.99591 * 180.02562 * 14 13 11 32 32 H 1.08994 * 115.55145 * 38.32640 * 19 4 3 33 33 H 1.08998 * 117.50255 * 0.02562 * 20 19 4 34 34 H 1.09005 * 117.49502 * 145.02058 * 20 19 4 35 35 H 1.08994 * 117.49715 * 214.97882 * 21 19 4 36 36 H 1.08995 * 117.49818 * 0.02562 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 3.4851 1.4252 0.0943 5 1 3.8327 0.5933 0.7069 6 6 3.9189 2.7457 0.7340 7 7 3.2457 2.9072 2.0251 8 16 3.7882 4.0386 3.1059 9 8 2.9176 3.9723 4.2270 10 8 5.1946 3.8595 3.2023 11 6 3.5372 5.6216 2.3739 12 1 3.0985 5.6981 1.3900 13 6 3.9008 6.7626 3.0574 14 7 4.4345 6.6693 4.2557 15 14 3.6352 8.4408 2.2810 16 1 3.0232 8.2738 0.9385 17 1 2.7306 9.2461 3.1404 18 1 4.9404 9.1365 2.1476 19 6 4.0895 1.3144 -1.3068 20 6 4.7684 -0.0047 -1.6810 21 6 5.6141 1.2432 -1.4148 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 1.5947 1.9187 0.7434 28 1 4.9982 2.7387 0.8853 29 1 3.6493 3.5732 0.0777 30 1 2.4823 2.3515 2.2470 31 1 4.6899 7.4720 4.7366 32 1 3.5535 1.8455 -2.0933 33 1 4.7841 -0.7937 -0.9291 34 1 4.6792 -0.3413 -2.7139 35 1 6.0809 1.7270 -2.2727 36 1 6.1863 1.2748 -0.4877 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721907103.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:23 Heat of formation + Delta-G solvation = -101.159678 kcal Electronic energy + Delta-G solvation = -18409.135179 eV Core-core repulsion = 15439.997362 eV Total energy + Delta-G solvation = -2969.137817 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.74107 -37.42233 -36.66689 -36.16435 -35.38560 -35.08642 -31.31871 -28.26736 -28.03932 -24.16555 -23.14121 -22.96168 -21.24624 -20.73931 -19.41222 -18.30876 -17.41152 -17.11249 -16.80273 -16.26308 -15.95709 -15.65304 -15.41045 -14.86435 -14.56667 -14.19319 -13.96333 -13.37345 -13.21429 -13.02638 -13.00150 -12.60192 -12.52896 -12.44455 -12.33538 -12.30220 -12.27291 -12.16879 -11.87911 -11.25971 -11.13162 -11.01377 -10.83221 -10.24003 -9.42455 -8.75563 -7.47834 0.32377 1.34265 1.35514 1.53383 2.21485 2.58297 2.82182 2.99327 3.13925 3.68794 3.84776 3.95034 4.16471 4.20542 4.24310 4.36842 4.38544 4.44190 4.62193 4.66171 4.71630 4.84082 4.85739 5.01291 5.08098 5.11904 5.18123 5.30969 5.31970 5.33487 5.41107 5.91225 6.09082 6.21821 6.41933 6.79158 8.21329 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.021911 B = 0.005905 C = 0.005552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.594606 B = 4740.840480 C = 5042.159058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.052 3.948 3 N -0.687 5.687 4 C 0.120 3.880 5 H 0.050 0.950 6 C 0.120 3.880 7 N -1.122 6.122 8 S 2.723 3.277 9 O -1.044 7.044 10 O -1.043 7.043 11 C -1.036 5.036 12 H 0.121 0.879 13 C 0.069 3.931 14 N -0.895 5.895 15 Si 0.991 3.009 16 H -0.247 1.247 17 H -0.260 1.260 18 H -0.259 1.259 19 C -0.144 4.144 20 C -0.165 4.165 21 C -0.186 4.186 22 H 0.074 0.926 23 H 0.050 0.950 24 H 0.061 0.939 25 H 0.027 0.973 26 H 0.080 0.920 27 H 0.341 0.659 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.409 0.591 31 H 0.299 0.701 32 H 0.114 0.886 33 H 0.092 0.908 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.803 -10.580 -13.061 17.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.077 4.077 3 N -0.322 5.322 4 C 0.008 3.992 5 H 0.068 0.932 6 C -0.006 4.006 7 N -0.883 5.883 8 S 2.824 3.176 9 O -1.035 7.035 10 O -1.032 7.032 11 C -1.170 5.170 12 H 0.139 0.861 13 C -0.144 4.144 14 N -0.526 5.526 15 Si 0.809 3.191 16 H -0.170 1.170 17 H -0.185 1.185 18 H -0.184 1.184 19 C -0.163 4.163 20 C -0.202 4.202 21 C -0.224 4.224 22 H 0.093 0.907 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.045 0.955 26 H 0.099 0.901 27 H 0.161 0.839 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.243 0.757 31 H 0.109 0.891 32 H 0.132 0.868 33 H 0.110 0.890 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.200 -10.589 -12.757 16.885 hybrid contribution -0.306 0.697 0.778 1.088 sum -3.506 -9.892 -11.980 15.926 Atomic orbital electron populations 1.21780 0.94101 1.02597 1.02239 1.22061 0.96282 0.88543 1.00773 1.60535 1.04886 1.13792 1.52953 1.21190 0.88476 0.94994 0.94499 0.93248 1.21444 0.96994 0.99055 0.83154 1.55437 1.45893 1.55474 1.31484 0.99804 0.71696 0.74363 0.71760 1.93313 1.68468 1.88695 1.52986 1.93302 1.35173 1.87844 1.86923 1.30888 1.55869 1.13692 1.16539 0.86057 1.26028 0.88588 1.06150 0.93608 1.69994 1.35182 1.34576 1.12884 0.85084 0.79473 0.74810 0.79685 1.16971 1.18466 1.18351 1.22156 0.94619 1.02637 0.96913 1.23051 1.03249 0.90829 1.03073 1.23065 0.93025 1.02629 1.03674 0.90669 0.93135 0.91978 0.95498 0.90137 0.83873 0.91089 0.90794 0.75673 0.89121 0.86781 0.88974 0.87277 0.87406 0.89569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 10.13 71.98 0.73 -1.85 16 2 C 0.05 1.04 6.25 86.30 0.54 1.58 16 3 N -0.69 -16.75 6.33 -491.57 -3.11 -19.86 16 4 C 0.12 3.13 2.46 44.91 0.11 3.24 16 5 H 0.05 1.30 7.51 -2.39 -0.02 1.29 16 6 C 0.12 4.02 5.67 86.38 0.49 4.51 16 7 N -1.12 -43.64 5.69 -187.49 -1.07 -44.71 16 8 S 2.72 145.54 5.02 -56.49 -0.28 145.26 16 9 O -1.04 -62.34 18.02 -128.00 -2.31 -64.64 16 10 O -1.04 -62.13 17.49 -128.00 -2.24 -64.36 16 11 C -1.04 -56.64 9.72 67.74 0.66 -55.98 16 12 H 0.12 5.98 7.81 -2.91 -0.02 5.96 16 13 C 0.07 3.83 5.46 84.66 0.46 4.29 16 14 N -0.89 -53.45 13.19 21.45 0.28 -53.17 16 15 Si 0.99 41.25 29.54 68.60 2.03 43.28 16 16 H -0.25 -9.56 7.11 99.48 0.71 -8.86 16 17 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 18 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 19 C -0.14 -3.19 5.30 -10.79 -0.06 -3.25 16 20 C -0.17 -2.98 10.18 30.62 0.31 -2.67 16 21 C -0.19 -3.90 9.87 30.62 0.30 -3.60 16 22 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 23 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 25 H 0.03 0.54 7.96 -2.39 -0.02 0.52 16 26 H 0.08 1.48 8.12 -2.38 -0.02 1.46 16 27 H 0.34 8.84 6.40 -89.69 -0.57 8.27 16 28 H 0.07 2.54 7.35 -2.39 -0.02 2.52 16 29 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.41 13.73 7.07 -96.75 -0.68 13.05 16 31 H 0.30 15.97 8.31 -92.71 -0.77 15.20 16 32 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.09 1.63 8.07 -2.39 -0.02 1.61 16 34 H 0.11 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.09 2.01 7.92 -2.39 -0.02 1.99 16 Total: -1.00 -73.19 315.15 -3.33 -76.52 By element: Atomic # 1 Polarization: 35.59 SS G_CDS: -0.18 Total: 35.41 kcal Atomic # 6 Polarization: -57.27 SS G_CDS: 3.55 Total: -53.72 kcal Atomic # 7 Polarization: -113.83 SS G_CDS: -3.90 Total: -117.73 kcal Atomic # 8 Polarization: -124.46 SS G_CDS: -4.54 Total: -129.01 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Atomic # 16 Polarization: 145.54 SS G_CDS: -0.28 Total: 145.26 kcal Total: -73.19 -3.33 -76.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721907103.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.644 kcal (2) G-P(sol) polarization free energy of solvation -73.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds