Wall clock time and date at job start Mon Mar 30 2020 05:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46906 * 109.47406 * 2 1 4 4 C 1.46898 * 111.00179 * 174.77141 * 3 2 1 5 5 H 1.08996 * 109.47142 * 24.60798 * 4 3 2 6 6 C 1.52998 * 109.46815 * 144.60171 * 4 3 2 7 7 N 1.46494 * 109.47484 * 305.00351 * 6 4 3 8 8 S 1.65602 * 120.00076 * 165.00178 * 7 6 4 9 9 O 1.42104 * 106.39910 * 178.53783 * 8 7 6 10 10 O 1.42096 * 106.40255 * 311.45393 * 8 7 6 11 11 C 1.76195 * 107.22092 * 64.99813 * 8 7 6 12 12 H 1.08002 * 120.00040 * 359.97438 * 11 8 7 13 13 C 1.37871 * 120.00157 * 180.02562 * 11 8 7 14 14 N 1.31523 * 120.00218 * 180.02562 * 13 11 8 15 15 Si 1.86804 * 120.00165 * 359.97438 * 13 11 8 16 16 H 1.48501 * 109.47117 * 90.00121 * 15 13 11 17 17 H 1.48503 * 109.47240 * 210.00168 * 15 13 11 18 18 H 1.48502 * 109.46801 * 330.00332 * 15 13 11 19 19 C 1.53000 * 109.47228 * 264.60138 * 4 3 2 20 20 C 1.53001 * 117.50048 * 305.41510 * 19 4 3 21 21 C 1.53005 * 60.03185 * 107.47431 * 20 19 4 22 22 H 1.08998 * 109.47237 * 60.00232 * 1 2 3 23 23 H 1.08997 * 109.46891 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46909 * 299.99905 * 1 2 3 25 25 H 1.09001 * 109.47738 * 239.99763 * 2 1 3 26 26 H 1.09004 * 109.47485 * 120.00116 * 2 1 3 27 27 H 1.00898 * 110.99397 * 298.73028 * 3 2 1 28 28 H 1.09013 * 109.46982 * 65.00406 * 6 4 3 29 29 H 1.08997 * 109.47283 * 184.99694 * 6 4 3 30 30 H 0.97004 * 119.99829 * 344.99576 * 7 6 4 31 31 H 0.97001 * 120.00003 * 180.02562 * 14 13 11 32 32 H 1.08996 * 115.54811 * 159.74271 * 19 4 3 33 33 H 1.09001 * 117.49853 * 214.97648 * 20 19 4 34 34 H 1.09003 * 117.49635 * 359.97438 * 20 19 4 35 35 H 1.09000 * 117.49725 * 107.50158 * 21 20 19 36 36 H 1.09002 * 117.49992 * 252.51986 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4828 1.4261 0.1250 5 1 3.9050 0.4897 -0.2397 6 6 4.0328 2.5898 -0.7022 7 7 3.5679 2.4680 -2.0860 8 16 3.6882 3.7587 -3.1165 9 8 3.1924 3.3167 -4.3728 10 8 3.1563 4.8781 -2.4214 11 6 5.4044 4.0850 -3.3458 12 1 6.1416 3.4757 -2.8442 13 6 5.8062 5.1187 -4.1649 14 7 7.0873 5.3619 -4.3364 15 14 4.5311 6.1731 -5.0321 16 1 4.1726 7.3267 -4.1685 17 1 5.0895 6.6699 -6.3153 18 1 3.3177 5.3606 -5.3017 19 6 3.8640 1.6196 1.5940 20 6 3.2596 2.8178 2.3288 21 6 2.7699 1.4025 2.6424 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 1.7133 1.8768 -0.8260 28 1 3.6809 3.5323 -0.2822 29 1 5.1223 2.5673 -0.6815 30 1 3.1896 1.6313 -2.3987 31 1 7.3700 6.0894 -4.9124 32 1 4.8802 1.3274 1.8584 33 1 3.8781 3.3137 3.0769 34 1 2.5907 3.4685 1.7655 35 1 3.0662 0.9674 3.5968 36 1 1.7790 1.1221 2.2851 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721907106.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:27 Heat of formation + Delta-G solvation = -57.443821 kcal Electronic energy + Delta-G solvation = -18620.892302 eV Core-core repulsion = 15653.650148 eV Total energy + Delta-G solvation = -2967.242155 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.84268 -35.65235 -35.22370 -34.44265 -34.12664 -33.03145 -30.25036 -27.13294 -26.39180 -23.25791 -22.24291 -21.86187 -19.64682 -19.03569 -17.59768 -16.85483 -16.13589 -15.83116 -15.52883 -14.94120 -14.44861 -14.25548 -13.62744 -13.45589 -13.29789 -13.16183 -12.82128 -12.30085 -11.89341 -11.71965 -11.40180 -11.33874 -11.30052 -11.09645 -10.99501 -10.78669 -10.63050 -10.50229 -10.14934 -9.90746 -9.67091 -9.27048 -9.21571 -8.61693 -8.41376 -6.80998 -5.35029 2.05153 3.06950 3.17734 3.26438 3.94375 3.95826 4.13249 4.32239 4.59144 4.92266 5.01037 5.06944 5.08724 5.23138 5.30710 5.39543 5.47550 5.53400 5.67064 5.73771 5.85508 5.90886 5.97639 6.07784 6.09432 6.11994 6.22683 6.38904 6.47221 6.54973 7.08548 7.43676 7.46973 7.63634 8.19575 8.70012 10.31347 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.029575 B = 0.006113 C = 0.005541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.503668 B = 4578.953458 C = 5051.690210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.051 3.949 3 N -0.686 5.686 4 C 0.110 3.890 5 H 0.059 0.941 6 C 0.121 3.879 7 N -1.128 6.128 8 S 2.677 3.323 9 O -1.010 7.010 10 O -1.008 7.008 11 C -1.016 5.016 12 H 0.121 0.879 13 C 0.153 3.847 14 N -0.823 5.823 15 Si 0.803 3.197 16 H -0.246 1.246 17 H -0.255 1.255 18 H -0.220 1.220 19 C -0.151 4.151 20 C -0.168 4.168 21 C -0.168 4.168 22 H 0.054 0.946 23 H 0.056 0.944 24 H 0.062 0.938 25 H 0.028 0.972 26 H 0.073 0.927 27 H 0.349 0.651 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.401 0.599 31 H 0.281 0.719 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.570 -9.122 10.399 15.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.078 4.078 3 N -0.320 5.320 4 C -0.001 4.001 5 H 0.077 0.923 6 C -0.006 4.006 7 N -0.884 5.884 8 S 2.779 3.221 9 O -1.000 7.000 10 O -0.998 6.998 11 C -1.150 5.150 12 H 0.139 0.861 13 C -0.067 4.067 14 N -0.453 5.453 15 Si 0.623 3.377 16 H -0.170 1.170 17 H -0.179 1.179 18 H -0.143 1.143 19 C -0.171 4.171 20 C -0.204 4.204 21 C -0.205 4.205 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.081 0.919 25 H 0.047 0.953 26 H 0.091 0.909 27 H 0.170 0.830 28 H 0.105 0.895 29 H 0.089 0.911 30 H 0.232 0.768 31 H 0.091 0.909 32 H 0.121 0.879 33 H 0.104 0.896 34 H 0.119 0.881 35 H 0.097 0.903 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.191 -8.303 10.686 15.818 hybrid contribution 0.658 -0.280 -1.342 1.521 sum -7.533 -8.583 9.344 14.756 Atomic orbital electron populations 1.21763 0.95152 1.01356 1.02529 1.22025 0.95611 0.89714 1.00490 1.60445 1.10140 1.14573 1.46886 1.21183 0.87720 0.97705 0.93500 0.92321 1.21383 0.99368 0.99395 0.80496 1.55594 1.79691 1.30738 1.22396 1.01297 0.77314 0.71761 0.71728 1.93477 1.83151 1.81668 1.41693 1.93412 1.81587 1.50349 1.74448 1.30448 1.16306 1.26887 1.41379 0.86132 1.24434 0.95646 0.94286 0.92319 1.69992 1.14873 1.27740 1.32649 0.87848 0.83871 0.84311 0.81700 1.16958 1.17940 1.14259 1.22261 0.97653 1.04984 0.92195 1.22835 1.03648 0.91213 1.02753 1.22909 0.99858 0.99803 0.97925 0.92716 0.92476 0.91925 0.95338 0.90880 0.82979 0.89513 0.91056 0.76794 0.90906 0.87919 0.89611 0.88131 0.90266 0.87417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 10.22 37.16 0.38 -1.02 16 2 C 0.05 0.53 5.36 -3.82 -0.02 0.50 16 3 N -0.69 -8.48 4.92 -106.72 -0.53 -9.01 16 4 C 0.11 1.42 2.62 -67.71 -0.18 1.25 16 5 H 0.06 0.72 7.71 -51.93 -0.40 0.32 16 6 C 0.12 1.96 5.74 -4.05 -0.02 1.93 16 7 N -1.13 -20.54 5.07 -10.61 -0.05 -20.59 16 8 S 2.68 65.26 4.24 -107.50 -0.46 64.81 16 9 O -1.01 -26.67 16.02 -57.17 -0.92 -27.58 16 10 O -1.01 -26.38 16.30 -57.17 -0.93 -27.31 16 11 C -1.02 -28.09 10.26 30.60 0.31 -27.78 16 12 H 0.12 3.36 8.06 -52.49 -0.42 2.93 16 13 C 0.15 4.38 5.47 -17.82 -0.10 4.28 16 14 N -0.82 -23.78 13.96 55.43 0.77 -23.00 16 15 Si 0.80 20.60 26.54 -169.99 -4.51 16.09 16 16 H -0.25 -6.17 7.11 56.52 0.40 -5.76 16 17 H -0.26 -6.02 7.11 56.52 0.40 -5.62 16 18 H -0.22 -5.75 5.61 56.52 0.32 -5.44 16 19 C -0.15 -1.79 5.79 -90.58 -0.52 -2.31 16 20 C -0.17 -2.02 9.58 -26.73 -0.26 -2.27 16 21 C -0.17 -1.82 9.42 -26.69 -0.25 -2.07 16 22 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.07 0.72 7.31 -51.93 -0.38 0.34 16 27 H 0.35 4.76 7.14 -39.29 -0.28 4.48 16 28 H 0.09 1.51 7.12 -51.92 -0.37 1.14 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.40 6.26 8.31 -34.47 -0.29 5.98 16 31 H 0.28 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.10 1.36 7.93 -51.93 -0.41 0.94 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.11 1.21 6.03 -51.93 -0.31 0.90 16 LS Contribution 304.39 15.07 4.59 4.59 Total: -1.00 -31.67 304.39 -8.16 -39.83 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -5.47 Total: 9.67 kcal Atomic # 6 Polarization: -26.83 SS G_CDS: -0.66 Total: -27.49 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: 0.19 Total: -52.60 kcal Atomic # 8 Polarization: -53.05 SS G_CDS: -1.85 Total: -54.89 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.51 Total: 16.09 kcal Atomic # 16 Polarization: 65.26 SS G_CDS: -0.46 Total: 64.81 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.67 -8.16 -39.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721907106.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.615 kcal (2) G-P(sol) polarization free energy of solvation -31.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds