Wall clock time and date at job start Mon Mar 30 2020 05:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46901 * 109.46916 * 2 1 4 4 C 1.46905 * 110.99870 * 180.02562 * 3 2 1 5 5 H 1.08999 * 110.01739 * 33.61062 * 4 3 2 6 6 C 1.54265 * 110.03269 * 272.17048 * 4 3 2 7 7 C 1.54887 * 104.19451 * 217.10680 * 6 4 3 8 8 C 1.54894 * 102.75047 * 37.94042 * 7 6 4 9 9 C 1.53870 * 110.03060 * 155.00117 * 4 3 2 10 10 H 1.09004 * 110.03542 * 238.56774 * 9 4 3 11 11 N 1.46503 * 110.03444 * 359.97438 * 9 4 3 12 12 S 1.65599 * 120.00064 * 215.00013 * 11 9 4 13 13 O 1.42099 * 106.40099 * 178.54001 * 12 11 9 14 14 O 1.42099 * 106.40082 * 311.45884 * 12 11 9 15 15 C 1.76200 * 107.21933 * 64.99919 * 12 11 9 16 16 H 1.08005 * 119.99740 * 359.97438 * 15 12 11 17 17 C 1.37876 * 120.00058 * 180.02562 * 15 12 11 18 18 N 1.31515 * 119.99723 * 180.02562 * 17 15 12 19 19 Si 1.86800 * 119.99965 * 359.97438 * 17 15 12 20 20 H 1.48507 * 109.46568 * 90.00188 * 19 17 15 21 21 H 1.48502 * 109.47240 * 209.99902 * 19 17 15 22 22 H 1.48499 * 109.47375 * 330.00506 * 19 17 15 23 23 H 1.09006 * 109.46835 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.46615 * 299.99641 * 1 2 3 25 25 H 1.08996 * 109.46939 * 60.00272 * 1 2 3 26 26 H 1.09004 * 109.46889 * 240.00381 * 2 1 3 27 27 H 1.08995 * 109.47384 * 120.00021 * 2 1 3 28 28 H 1.00901 * 111.00067 * 303.95263 * 3 2 1 29 29 H 1.09004 * 110.48184 * 335.78069 * 6 4 3 30 30 H 1.08994 * 110.49029 * 98.42512 * 6 4 3 31 31 H 1.08998 * 110.75498 * 279.62750 * 7 6 4 32 32 H 1.09002 * 110.91608 * 156.32997 * 7 6 4 33 33 H 1.09000 * 110.48448 * 203.38137 * 8 7 6 34 34 H 1.09003 * 110.59803 * 80.79436 * 8 7 6 35 35 H 0.97000 * 119.99506 * 35.00356 * 11 9 4 36 36 H 0.97003 * 119.99513 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4882 1.4242 -0.0006 5 1 3.8837 0.5817 -0.5678 6 6 4.0185 1.3833 1.4474 7 6 5.2490 2.3237 1.4280 8 6 4.7918 3.4656 0.4866 9 6 3.9798 2.7481 -0.6115 10 1 4.6147 2.5481 -1.4747 11 7 2.8360 3.5723 -1.0100 12 16 2.9329 4.5255 -2.3607 13 8 1.6697 5.1627 -2.4935 14 8 4.1570 5.2400 -2.2606 15 6 3.0961 3.4505 -3.7472 16 1 3.1162 2.3805 -3.6014 17 6 3.1994 3.9752 -5.0180 18 7 3.3207 3.1727 -6.0528 19 14 3.1654 5.8258 -5.2699 20 1 4.5497 6.3595 -5.2056 21 1 2.5773 6.1339 -6.5983 22 1 2.3423 6.4552 -4.2062 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 1.6442 1.9013 -0.7814 29 1 3.2643 1.7561 2.1405 30 1 4.3170 0.3699 1.7159 31 1 6.1201 1.8116 1.0193 32 1 5.4613 2.7075 2.4259 33 1 5.6547 3.9717 0.0538 34 1 4.1631 4.1763 1.0230 35 1 2.0221 3.5597 -0.4826 36 1 3.3930 3.5419 -6.9469 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721908791.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:41 Heat of formation + Delta-G solvation = -81.786453 kcal Electronic energy + Delta-G solvation = -19034.866782 eV Core-core repulsion = 16066.569051 eV Total energy + Delta-G solvation = -2968.297731 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.94306 -35.62245 -34.89655 -34.40696 -33.09973 -32.89647 -30.02060 -26.95286 -26.44296 -25.79744 -22.16346 -20.50373 -19.61339 -19.16718 -17.52290 -16.79797 -16.35732 -15.49333 -15.14148 -14.83047 -14.37626 -14.02309 -13.70414 -13.49333 -13.19365 -12.90578 -12.67014 -12.23020 -11.86679 -11.50816 -11.36911 -11.29731 -11.03240 -10.93585 -10.82490 -10.72565 -10.59648 -10.56979 -10.47284 -10.35546 -9.81992 -9.22993 -9.22723 -8.63565 -8.26377 -6.82802 -5.37111 2.07978 3.06441 3.16915 3.26441 3.94037 4.14377 4.52379 4.59360 4.74062 4.84274 5.18647 5.23227 5.34685 5.36750 5.52906 5.59788 5.68325 5.72837 5.79609 5.85110 5.93637 6.03615 6.08436 6.14240 6.19197 6.21053 6.28685 6.47499 6.49739 6.74781 7.23370 7.45034 7.57331 7.79517 8.15811 8.68345 10.29343 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.022476 B = 0.007769 C = 0.006688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.456566 B = 3603.401150 C = 4185.832253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.053 3.947 3 N -0.687 5.687 4 C 0.074 3.926 5 H 0.054 0.946 6 C -0.111 4.111 7 C -0.125 4.125 8 C -0.135 4.135 9 C 0.154 3.846 10 H 0.095 0.905 11 N -1.116 6.116 12 S 2.673 3.327 13 O -1.009 7.009 14 O -1.009 7.009 15 C -1.017 5.017 16 H 0.119 0.881 17 C 0.153 3.847 18 N -0.823 5.823 19 Si 0.803 3.197 20 H -0.246 1.246 21 H -0.256 1.256 22 H -0.220 1.220 23 H 0.056 0.944 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.029 0.971 27 H 0.067 0.933 28 H 0.351 0.649 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.412 0.588 36 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.103 -5.439 12.087 13.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.076 4.076 3 N -0.324 5.324 4 C -0.038 4.038 5 H 0.072 0.928 6 C -0.149 4.149 7 C -0.163 4.163 8 C -0.175 4.175 9 C 0.046 3.954 10 H 0.113 0.887 11 N -0.874 5.874 12 S 2.775 3.225 13 O -0.999 6.999 14 O -0.999 6.999 15 C -1.152 5.152 16 H 0.137 0.863 17 C -0.066 4.066 18 N -0.452 5.452 19 Si 0.623 3.377 20 H -0.170 1.170 21 H -0.180 1.180 22 H -0.142 1.142 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.047 0.953 27 H 0.086 0.914 28 H 0.175 0.825 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.247 0.753 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.174 -4.453 12.453 13.227 hybrid contribution -0.093 -0.318 -1.430 1.467 sum 0.081 -4.771 11.024 12.012 Atomic orbital electron populations 1.21782 0.95180 1.01427 1.02608 1.21938 0.95559 0.89929 1.00168 1.60775 1.07216 1.13407 1.51040 1.22398 0.88184 0.96801 0.96373 0.92790 1.22411 0.97279 0.98933 0.96297 1.22447 0.97594 0.96724 0.99531 1.22848 1.00291 0.97761 0.96563 1.21439 0.86984 0.89189 0.97831 0.88684 1.55709 1.22822 1.62866 1.45986 1.01427 0.73366 0.73931 0.73817 1.93478 1.44314 1.75617 1.86502 1.93410 1.47124 1.72493 1.86860 1.30480 1.66377 1.09943 1.08350 0.86329 1.24422 0.88619 0.98737 0.94834 1.69990 1.39193 1.36350 0.99703 0.87844 0.82133 0.84837 0.82920 1.17015 1.17960 1.14189 0.92497 0.91960 0.92463 0.95252 0.91436 0.82518 0.90442 0.92345 0.91534 0.91556 0.90610 0.90830 0.75310 0.90914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 10.17 37.16 0.38 -1.32 16 2 C 0.05 0.66 6.23 -3.82 -0.02 0.63 16 3 N -0.69 -9.68 5.61 -105.54 -0.59 -10.27 16 4 C 0.07 1.05 3.25 -66.59 -0.22 0.83 16 5 H 0.05 0.76 7.81 -51.93 -0.41 0.35 16 6 C -0.11 -1.31 6.49 -25.07 -0.16 -1.47 16 7 C -0.12 -1.45 6.91 -24.74 -0.17 -1.62 16 8 C -0.14 -2.00 6.54 -25.07 -0.16 -2.17 16 9 C 0.15 2.57 3.43 -66.81 -0.23 2.35 16 10 H 0.10 1.71 7.91 -51.93 -0.41 1.30 16 11 N -1.12 -20.95 4.40 -3.94 -0.02 -20.97 16 12 S 2.67 65.40 4.15 -107.50 -0.45 64.95 16 13 O -1.01 -26.80 16.02 -57.17 -0.92 -27.71 16 14 O -1.01 -26.44 16.59 -57.17 -0.95 -27.39 16 15 C -1.02 -27.79 10.17 30.60 0.31 -27.48 16 16 H 0.12 3.25 8.06 -52.48 -0.42 2.83 16 17 C 0.15 4.37 5.47 -17.82 -0.10 4.27 16 18 N -0.82 -23.57 13.96 55.43 0.77 -22.80 16 19 Si 0.80 20.57 26.54 -169.99 -4.51 16.06 16 20 H -0.25 -6.18 7.11 56.52 0.40 -5.77 16 21 H -0.26 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.22 -5.75 5.61 56.52 0.32 -5.43 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.03 0.38 8.07 -51.93 -0.42 -0.04 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.35 5.48 6.24 -39.29 -0.25 5.23 16 29 H 0.08 0.94 8.05 -51.93 -0.42 0.52 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.07 1.09 8.05 -51.93 -0.42 0.67 16 35 H 0.41 6.94 7.06 -34.47 -0.24 6.70 16 36 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 300.45 15.07 4.53 4.53 Total: -1.00 -31.35 300.45 -8.09 -39.44 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -5.58 Total: 10.15 kcal Atomic # 6 Polarization: -25.61 SS G_CDS: -0.38 Total: -25.98 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: 0.16 Total: -54.03 kcal Atomic # 8 Polarization: -53.24 SS G_CDS: -1.86 Total: -55.10 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.51 Total: 16.06 kcal Atomic # 16 Polarization: 65.40 SS G_CDS: -0.45 Total: 64.95 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.35 -8.09 -39.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721908791.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.349 kcal (2) G-P(sol) polarization free energy of solvation -31.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds