Wall clock time and date at job start Mon Mar 30 2020 05:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46901 * 109.46916 * 2 1 4 4 C 1.46905 * 110.99870 * 180.02562 * 3 2 1 5 5 H 1.08999 * 110.01739 * 33.61062 * 4 3 2 6 6 C 1.54265 * 110.03269 * 272.17048 * 4 3 2 7 7 C 1.54887 * 104.19451 * 217.10680 * 6 4 3 8 8 C 1.54894 * 102.75047 * 37.94042 * 7 6 4 9 9 C 1.53870 * 110.03060 * 155.00117 * 4 3 2 10 10 H 1.09004 * 110.03542 * 238.56774 * 9 4 3 11 11 N 1.46503 * 110.03444 * 359.97438 * 9 4 3 12 12 S 1.65599 * 120.00064 * 215.00013 * 11 9 4 13 13 O 1.42099 * 106.40099 * 178.54001 * 12 11 9 14 14 O 1.42099 * 106.40082 * 311.45884 * 12 11 9 15 15 C 1.76200 * 107.21933 * 64.99919 * 12 11 9 16 16 H 1.08005 * 119.99740 * 359.97438 * 15 12 11 17 17 C 1.37876 * 120.00058 * 180.02562 * 15 12 11 18 18 N 1.31515 * 119.99723 * 180.02562 * 17 15 12 19 19 Si 1.86800 * 119.99965 * 359.97438 * 17 15 12 20 20 H 1.48507 * 109.46568 * 90.00188 * 19 17 15 21 21 H 1.48502 * 109.47240 * 209.99902 * 19 17 15 22 22 H 1.48499 * 109.47375 * 330.00506 * 19 17 15 23 23 H 1.09006 * 109.46835 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.46615 * 299.99641 * 1 2 3 25 25 H 1.08996 * 109.46939 * 60.00272 * 1 2 3 26 26 H 1.09004 * 109.46889 * 240.00381 * 2 1 3 27 27 H 1.08995 * 109.47384 * 120.00021 * 2 1 3 28 28 H 1.00901 * 111.00067 * 303.95263 * 3 2 1 29 29 H 1.09004 * 110.48184 * 335.78069 * 6 4 3 30 30 H 1.08994 * 110.49029 * 98.42512 * 6 4 3 31 31 H 1.08998 * 110.75498 * 279.62750 * 7 6 4 32 32 H 1.09002 * 110.91608 * 156.32997 * 7 6 4 33 33 H 1.09000 * 110.48448 * 203.38137 * 8 7 6 34 34 H 1.09003 * 110.59803 * 80.79436 * 8 7 6 35 35 H 0.97000 * 119.99506 * 35.00356 * 11 9 4 36 36 H 0.97003 * 119.99513 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4882 1.4242 -0.0006 5 1 3.8837 0.5817 -0.5678 6 6 4.0185 1.3833 1.4474 7 6 5.2490 2.3237 1.4280 8 6 4.7918 3.4656 0.4866 9 6 3.9798 2.7481 -0.6115 10 1 4.6147 2.5481 -1.4747 11 7 2.8360 3.5723 -1.0100 12 16 2.9329 4.5255 -2.3607 13 8 1.6697 5.1627 -2.4935 14 8 4.1570 5.2400 -2.2606 15 6 3.0961 3.4505 -3.7472 16 1 3.1162 2.3805 -3.6014 17 6 3.1994 3.9752 -5.0180 18 7 3.3207 3.1727 -6.0528 19 14 3.1654 5.8258 -5.2699 20 1 4.5497 6.3595 -5.2056 21 1 2.5773 6.1339 -6.5983 22 1 2.3423 6.4552 -4.2062 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 1.6442 1.9013 -0.7814 29 1 3.2643 1.7561 2.1405 30 1 4.3170 0.3699 1.7159 31 1 6.1201 1.8116 1.0193 32 1 5.4613 2.7075 2.4259 33 1 5.6547 3.9717 0.0538 34 1 4.1631 4.1763 1.0230 35 1 2.0221 3.5597 -0.4826 36 1 3.3930 3.5419 -6.9469 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721908791.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:41 Heat of formation + Delta-G solvation = -106.533615 kcal Electronic energy + Delta-G solvation = -19035.939899 eV Core-core repulsion = 16066.569051 eV Total energy + Delta-G solvation = -2969.370848 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.12807 -37.66388 -36.48011 -35.97773 -35.21314 -34.32692 -31.03788 -28.60599 -28.12045 -26.93582 -23.16665 -21.60867 -21.17557 -20.76143 -19.43109 -18.71981 -17.74649 -17.20290 -16.35916 -16.22066 -15.99174 -15.48118 -15.30822 -15.01954 -14.80289 -14.43122 -13.92368 -13.64870 -13.43705 -13.16841 -12.85549 -12.69502 -12.62476 -12.53339 -12.43152 -12.06196 -11.94803 -11.86913 -11.72907 -11.63972 -11.42217 -11.35330 -11.18951 -10.26562 -9.38695 -8.98538 -7.54337 0.14520 1.03734 1.12872 1.20508 1.87574 2.40116 2.52333 3.28472 3.32665 3.57202 3.77096 4.08346 4.21893 4.29334 4.36877 4.42196 4.50855 4.57779 4.66518 4.72947 4.79565 4.91067 5.00341 5.13550 5.16361 5.23018 5.29029 5.33537 5.35252 5.41760 5.57959 5.96832 6.11419 6.35398 6.36747 6.52083 8.18789 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.022476 B = 0.007769 C = 0.006688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.456566 B = 3603.401150 C = 4185.832253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.051 3.949 3 N -0.690 5.690 4 C 0.075 3.925 5 H 0.053 0.947 6 C -0.101 4.101 7 C -0.115 4.115 8 C -0.138 4.138 9 C 0.141 3.859 10 H 0.075 0.925 11 N -1.100 6.100 12 S 2.697 3.303 13 O -1.030 7.030 14 O -1.027 7.027 15 C -1.036 5.036 16 H 0.105 0.895 17 C 0.109 3.891 18 N -0.852 5.852 19 Si 0.824 3.176 20 H -0.239 1.239 21 H -0.221 1.221 22 H -0.230 1.230 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.042 0.958 26 H 0.020 0.980 27 H 0.086 0.914 28 H 0.339 0.661 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.423 0.577 36 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.215 -5.813 13.724 14.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.078 4.078 3 N -0.326 5.326 4 C -0.037 4.037 5 H 0.071 0.929 6 C -0.139 4.139 7 C -0.153 4.153 8 C -0.178 4.178 9 C 0.033 3.967 10 H 0.093 0.907 11 N -0.862 5.862 12 S 2.796 3.204 13 O -1.020 7.020 14 O -1.016 7.016 15 C -1.168 5.168 16 H 0.123 0.877 17 C -0.107 4.107 18 N -0.483 5.483 19 Si 0.642 3.358 20 H -0.163 1.163 21 H -0.143 1.143 22 H -0.152 1.152 23 H 0.093 0.907 24 H 0.085 0.915 25 H 0.061 0.939 26 H 0.038 0.962 27 H 0.104 0.896 28 H 0.160 0.840 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.261 0.739 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.286 -4.846 14.072 14.886 hybrid contribution -0.124 -0.290 -1.891 1.917 sum 0.162 -5.137 12.181 13.221 Atomic orbital electron populations 1.21771 0.94359 1.02496 1.02076 1.22044 0.96301 0.88882 1.00564 1.60880 1.07093 1.14418 1.50181 1.22464 0.88330 0.94913 0.97960 0.92852 1.22371 0.97125 1.00254 0.94197 1.22438 0.97777 0.95281 0.99789 1.22857 0.99539 0.98835 0.96544 1.21736 0.86286 0.90676 0.98029 0.90720 1.55212 1.24235 1.62579 1.44205 1.00559 0.72412 0.73547 0.73852 1.93439 1.45031 1.76318 1.87229 1.93382 1.47862 1.73046 1.87324 1.30954 1.65886 1.10077 1.09879 0.87709 1.25136 0.88671 1.01841 0.95095 1.70011 1.40020 1.37800 1.00441 0.87497 0.82619 0.81324 0.84403 1.16271 1.14301 1.15230 0.90677 0.91518 0.93917 0.96182 0.89613 0.83963 0.90287 0.90178 0.90550 0.89367 0.91740 0.90791 0.73914 0.89872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 10.17 71.98 0.73 -2.38 16 2 C 0.05 1.18 6.23 86.30 0.54 1.71 16 3 N -0.69 -18.60 5.61 -487.82 -2.74 -21.34 16 4 C 0.08 2.01 3.25 45.64 0.15 2.16 16 5 H 0.05 1.44 7.81 -2.39 -0.02 1.42 16 6 C -0.10 -2.08 6.49 31.67 0.21 -1.87 16 7 C -0.11 -2.33 6.91 31.89 0.22 -2.11 16 8 C -0.14 -3.92 6.54 31.67 0.21 -3.71 16 9 C 0.14 4.63 3.43 45.71 0.16 4.79 16 10 H 0.07 2.74 7.91 -2.38 -0.02 2.72 16 11 N -1.10 -41.16 4.40 -166.37 -0.73 -41.89 16 12 S 2.70 132.67 4.15 -56.49 -0.23 132.43 16 13 O -1.03 -54.72 16.02 -128.00 -2.05 -56.77 16 14 O -1.03 -53.88 16.59 -128.00 -2.12 -56.00 16 15 C -1.04 -57.65 10.17 67.73 0.69 -56.96 16 16 H 0.10 5.94 8.06 -2.91 -0.02 5.92 16 17 C 0.11 6.27 5.47 84.65 0.46 6.73 16 18 N -0.85 -49.19 13.96 21.45 0.30 -48.89 16 19 Si 0.82 41.25 26.54 68.60 1.82 43.07 16 20 H -0.24 -11.62 7.11 99.48 0.71 -10.92 16 21 H -0.22 -9.76 7.11 99.48 0.71 -9.05 16 22 H -0.23 -11.85 5.61 99.48 0.56 -11.29 16 23 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 24 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.02 0.50 8.07 -2.39 -0.02 0.48 16 27 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.34 10.47 6.24 -89.69 -0.56 9.91 16 29 H 0.08 1.64 8.05 -2.38 -0.02 1.62 16 30 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.07 2.08 8.05 -2.39 -0.02 2.06 16 35 H 0.42 14.05 7.06 -96.74 -0.68 13.36 16 36 H 0.29 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -66.39 300.45 -2.72 -69.11 By element: Atomic # 1 Polarization: 32.24 SS G_CDS: -0.32 Total: 31.92 kcal Atomic # 6 Polarization: -55.00 SS G_CDS: 3.36 Total: -51.64 kcal Atomic # 7 Polarization: -108.95 SS G_CDS: -3.17 Total: -112.12 kcal Atomic # 8 Polarization: -108.60 SS G_CDS: -4.17 Total: -112.77 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 1.82 Total: 43.07 kcal Atomic # 16 Polarization: 132.67 SS G_CDS: -0.23 Total: 132.43 kcal Total: -66.39 -2.72 -69.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721908791.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.428 kcal (2) G-P(sol) polarization free energy of solvation -66.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds