Wall clock time and date at job start Mon Mar 30 2020 05:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46901 * 109.47215 * 2 1 4 4 C 1.46897 * 111.00150 * 180.02562 * 3 2 1 5 5 H 1.09002 * 110.43506 * 325.69899 * 4 3 2 6 6 C 1.54892 * 110.60013 * 88.31634 * 4 3 2 7 7 C 1.54888 * 102.74611 * 156.67401 * 6 4 3 8 8 C 1.54265 * 104.19721 * 322.05788 * 7 6 4 9 9 C 1.53873 * 106.59997 * 23.61451 * 8 7 6 10 10 H 1.08992 * 110.03600 * 119.28231 * 9 8 7 11 11 N 1.46501 * 110.02668 * 240.71345 * 9 8 7 12 12 S 1.65596 * 119.99921 * 262.16102 * 11 9 8 13 13 O 1.42104 * 106.40204 * 178.54215 * 12 11 9 14 14 O 1.42104 * 106.40313 * 311.46602 * 12 11 9 15 15 C 1.76196 * 107.21942 * 65.00400 * 12 11 9 16 16 H 1.08008 * 119.99958 * 359.97438 * 15 12 11 17 17 C 1.37877 * 120.00243 * 179.97438 * 15 12 11 18 18 N 1.31513 * 119.99982 * 0.02562 * 17 15 12 19 19 Si 1.86802 * 119.99711 * 179.97438 * 17 15 12 20 20 H 1.48504 * 109.47116 * 90.00372 * 19 17 15 21 21 H 1.48503 * 109.46768 * 209.99875 * 19 17 15 22 22 H 1.48496 * 109.47712 * 330.00319 * 19 17 15 23 23 H 1.09000 * 109.47244 * 60.00098 * 1 2 3 24 24 H 1.09001 * 109.47248 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47162 * 300.00126 * 1 2 3 26 26 H 1.09001 * 109.47162 * 239.99874 * 2 1 3 27 27 H 1.09000 * 109.47244 * 119.99902 * 2 1 3 28 28 H 1.00905 * 110.99829 * 56.04315 * 3 2 1 29 29 H 1.08992 * 110.75663 * 274.99263 * 6 4 3 30 30 H 1.09000 * 110.75339 * 38.36287 * 6 4 3 31 31 H 1.09007 * 110.48520 * 203.37936 * 7 6 4 32 32 H 1.08998 * 110.59686 * 80.79466 * 7 6 4 33 33 H 1.08993 * 110.03585 * 264.31946 * 8 7 6 34 34 H 1.09006 * 110.07186 * 142.91875 * 8 7 6 35 35 H 0.97001 * 120.00393 * 82.16974 * 11 9 8 36 36 H 0.97003 * 119.99739 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4881 1.4242 -0.0006 5 1 3.8913 0.5908 0.5747 6 6 4.0334 1.3964 -1.4501 7 6 5.4357 2.0369 -1.3000 8 6 5.2308 3.1563 -0.2585 9 6 3.9926 2.7667 0.5678 10 1 4.2653 2.6493 1.6165 11 7 2.9548 3.7916 0.4301 12 16 2.7834 4.9577 1.5933 13 8 1.7310 5.8074 1.1576 14 8 2.7686 4.2797 2.8421 15 6 4.2506 5.9332 1.5742 16 1 5.0432 5.7028 0.8776 17 6 4.3869 6.9906 2.4484 18 7 3.4220 7.2708 3.2970 19 14 5.9428 8.0242 2.4285 20 1 5.7747 9.1536 1.4791 21 1 6.2006 8.5568 3.7906 22 1 7.0899 7.1841 2.0001 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6441 1.9013 0.7814 29 1 4.1135 0.3718 -1.8131 30 1 3.4048 1.9934 -2.1108 31 1 5.7673 2.4558 -2.2501 32 1 6.1551 1.3036 -0.9356 33 1 5.0597 4.1078 -0.7618 34 1 6.1044 3.2288 0.3895 35 1 2.3680 3.7871 -0.3422 36 1 3.5178 8.0150 3.9118 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721908792.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:45 Heat of formation + Delta-G solvation = -104.238835 kcal Electronic energy + Delta-G solvation = -18931.800416 eV Core-core repulsion = 15962.529077 eV Total energy + Delta-G solvation = -2969.271339 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.81298 -35.17819 -34.99037 -33.90071 -33.10819 -32.45467 -30.07808 -27.06243 -26.04950 -25.71366 -22.12039 -20.25913 -19.71856 -18.95321 -17.49974 -16.37124 -16.02522 -15.30957 -15.11766 -14.58495 -14.42511 -13.95570 -13.88062 -13.50005 -13.21595 -12.82374 -12.06053 -11.96630 -11.84320 -11.34411 -11.24493 -11.19803 -11.01862 -10.95302 -10.80515 -10.67484 -10.56987 -10.32915 -10.24617 -10.13026 -10.04616 -9.21706 -8.94030 -8.44711 -8.28028 -6.66717 -5.27528 2.40824 3.08388 3.15346 3.21332 4.08123 4.27046 4.67487 4.69023 4.86709 4.98911 5.14588 5.27496 5.30721 5.50224 5.55947 5.69904 5.76766 5.80543 5.81490 5.90239 5.99063 6.05843 6.11915 6.15993 6.19538 6.32648 6.48272 6.50671 6.72163 6.95806 7.26371 7.37194 7.57418 8.00400 8.10596 8.93104 10.27405 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.026245 B = 0.007057 C = 0.005893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.630264 B = 3966.523269 C = 4750.009723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 N -0.682 5.682 4 C 0.075 3.925 5 H 0.054 0.946 6 C -0.110 4.110 7 C -0.123 4.123 8 C -0.142 4.142 9 C 0.154 3.846 10 H 0.091 0.909 11 N -1.123 6.123 12 S 2.714 3.286 13 O -1.007 7.007 14 O -1.012 7.012 15 C -1.019 5.019 16 H 0.104 0.896 17 C 0.133 3.867 18 N -0.847 5.847 19 Si 0.919 3.081 20 H -0.268 1.268 21 H -0.276 1.276 22 H -0.263 1.263 23 H 0.063 0.937 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.026 0.974 28 H 0.350 0.650 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.409 0.591 36 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.157 -11.830 -7.566 14.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.075 4.075 3 N -0.315 5.315 4 C -0.037 4.037 5 H 0.072 0.928 6 C -0.148 4.148 7 C -0.162 4.162 8 C -0.181 4.181 9 C 0.045 3.955 10 H 0.109 0.891 11 N -0.878 5.878 12 S 2.814 3.186 13 O -0.998 6.998 14 O -1.001 7.001 15 C -1.152 5.152 16 H 0.122 0.878 17 C -0.085 4.085 18 N -0.477 5.477 19 Si 0.743 3.257 20 H -0.193 1.193 21 H -0.201 1.201 22 H -0.187 1.187 23 H 0.082 0.918 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.044 0.956 28 H 0.170 0.830 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.241 0.759 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.345 -11.572 -7.348 13.773 hybrid contribution 1.391 0.478 0.412 1.527 sum 2.736 -11.094 -6.936 13.367 Atomic orbital electron populations 1.21780 0.95197 1.01324 1.02683 1.21944 0.95555 0.90021 1.00017 1.60513 1.07222 1.12896 1.50885 1.22631 0.87793 0.96630 0.96625 0.92760 1.22502 0.95882 1.00051 0.96346 1.22315 0.96807 0.97857 0.99177 1.22745 0.98065 0.99491 0.97845 1.21293 0.87580 0.86803 0.99835 0.89083 1.55953 1.45285 1.44512 1.42004 1.00396 0.75431 0.71724 0.71058 1.93376 1.58330 1.66062 1.82017 1.93353 1.88820 1.75617 1.42355 1.30620 1.25454 1.29053 1.30081 0.87800 1.24742 0.97420 0.95049 0.91285 1.69903 1.32179 1.27864 1.17719 0.86191 0.81487 0.79807 0.78209 1.19273 1.20105 1.18700 0.91797 0.92537 0.92644 0.91371 0.95597 0.82961 0.92437 0.90448 0.91752 0.92025 0.90051 0.91145 0.75855 0.89994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 10.17 37.16 0.38 -1.25 16 2 C 0.05 0.63 6.26 -3.83 -0.02 0.61 16 3 N -0.68 -9.59 5.51 -104.98 -0.58 -10.17 16 4 C 0.07 1.04 3.08 -66.05 -0.20 0.84 16 5 H 0.05 0.71 7.85 -51.93 -0.41 0.30 16 6 C -0.11 -1.33 6.56 -24.74 -0.16 -1.49 16 7 C -0.12 -1.47 6.83 -25.07 -0.17 -1.64 16 8 C -0.14 -2.13 6.20 -25.61 -0.16 -2.29 16 9 C 0.15 2.59 3.38 -66.81 -0.23 2.36 16 10 H 0.09 1.66 7.54 -51.93 -0.39 1.26 16 11 N -1.12 -21.77 4.20 -3.94 -0.02 -21.79 16 12 S 2.71 70.64 5.00 -107.50 -0.54 70.10 16 13 O -1.01 -29.47 18.02 -57.17 -1.03 -30.50 16 14 O -1.01 -28.95 17.38 -57.17 -0.99 -29.95 16 15 C -1.02 -27.52 9.72 30.60 0.30 -27.22 16 16 H 0.10 2.54 7.05 -52.48 -0.37 2.17 16 17 C 0.13 3.68 5.46 -17.82 -0.10 3.59 16 18 N -0.85 -24.93 13.19 55.43 0.73 -24.20 16 19 Si 0.92 20.52 29.54 -169.99 -5.02 15.49 16 20 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 21 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 22 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.03 0.30 8.08 -51.93 -0.42 -0.12 16 28 H 0.35 5.54 7.65 -39.29 -0.30 5.24 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.06 0.71 8.14 -51.92 -0.42 0.28 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.08 1.31 7.55 -51.93 -0.39 0.92 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.41 7.28 8.32 -34.46 -0.29 7.00 16 36 H 0.29 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 307.46 15.07 4.63 4.63 Total: -1.00 -33.47 307.46 -8.69 -42.16 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -5.51 Total: 10.70 kcal Atomic # 6 Polarization: -26.13 SS G_CDS: -0.37 Total: -26.49 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: 0.14 Total: -56.15 kcal Atomic # 8 Polarization: -58.42 SS G_CDS: -2.02 Total: -60.44 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 16 Polarization: 70.64 SS G_CDS: -0.54 Total: 70.10 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.47 -8.69 -42.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721908792.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.078 kcal (2) G-P(sol) polarization free energy of solvation -33.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds