Wall clock time and date at job start Mon Mar 30 2020 05:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46901 * 109.47215 * 2 1 4 4 C 1.46897 * 111.00150 * 180.02562 * 3 2 1 5 5 H 1.09002 * 110.43506 * 325.69899 * 4 3 2 6 6 C 1.54892 * 110.60013 * 88.31634 * 4 3 2 7 7 C 1.54888 * 102.74611 * 156.67401 * 6 4 3 8 8 C 1.54265 * 104.19721 * 322.05788 * 7 6 4 9 9 C 1.53873 * 106.59997 * 23.61451 * 8 7 6 10 10 H 1.08992 * 110.03600 * 119.28231 * 9 8 7 11 11 N 1.46501 * 110.02668 * 240.71345 * 9 8 7 12 12 S 1.65596 * 119.99921 * 262.16102 * 11 9 8 13 13 O 1.42104 * 106.40204 * 178.54215 * 12 11 9 14 14 O 1.42104 * 106.40313 * 311.46602 * 12 11 9 15 15 C 1.76196 * 107.21942 * 65.00400 * 12 11 9 16 16 H 1.08008 * 119.99958 * 359.97438 * 15 12 11 17 17 C 1.37877 * 120.00243 * 179.97438 * 15 12 11 18 18 N 1.31513 * 119.99982 * 0.02562 * 17 15 12 19 19 Si 1.86802 * 119.99711 * 179.97438 * 17 15 12 20 20 H 1.48504 * 109.47116 * 90.00372 * 19 17 15 21 21 H 1.48503 * 109.46768 * 209.99875 * 19 17 15 22 22 H 1.48496 * 109.47712 * 330.00319 * 19 17 15 23 23 H 1.09000 * 109.47244 * 60.00098 * 1 2 3 24 24 H 1.09001 * 109.47248 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47162 * 300.00126 * 1 2 3 26 26 H 1.09001 * 109.47162 * 239.99874 * 2 1 3 27 27 H 1.09000 * 109.47244 * 119.99902 * 2 1 3 28 28 H 1.00905 * 110.99829 * 56.04315 * 3 2 1 29 29 H 1.08992 * 110.75663 * 274.99263 * 6 4 3 30 30 H 1.09000 * 110.75339 * 38.36287 * 6 4 3 31 31 H 1.09007 * 110.48520 * 203.37936 * 7 6 4 32 32 H 1.08998 * 110.59686 * 80.79466 * 7 6 4 33 33 H 1.08993 * 110.03585 * 264.31946 * 8 7 6 34 34 H 1.09006 * 110.07186 * 142.91875 * 8 7 6 35 35 H 0.97001 * 120.00393 * 82.16974 * 11 9 8 36 36 H 0.97003 * 119.99739 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4881 1.4242 -0.0006 5 1 3.8913 0.5908 0.5747 6 6 4.0334 1.3964 -1.4501 7 6 5.4357 2.0369 -1.3000 8 6 5.2308 3.1563 -0.2585 9 6 3.9926 2.7667 0.5678 10 1 4.2653 2.6493 1.6165 11 7 2.9548 3.7916 0.4301 12 16 2.7834 4.9577 1.5933 13 8 1.7310 5.8074 1.1576 14 8 2.7686 4.2797 2.8421 15 6 4.2506 5.9332 1.5742 16 1 5.0432 5.7028 0.8776 17 6 4.3869 6.9906 2.4484 18 7 3.4220 7.2708 3.2970 19 14 5.9428 8.0242 2.4285 20 1 5.7747 9.1536 1.4791 21 1 6.2006 8.5568 3.7906 22 1 7.0899 7.1841 2.0001 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6441 1.9013 0.7814 29 1 4.1135 0.3718 -1.8131 30 1 3.4048 1.9934 -2.1108 31 1 5.7673 2.4558 -2.2501 32 1 6.1551 1.3036 -0.9356 33 1 5.0597 4.1078 -0.7618 34 1 6.1044 3.2288 0.3895 35 1 2.3680 3.7871 -0.3422 36 1 3.5178 8.0150 3.9118 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721908792.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:45 Heat of formation + Delta-G solvation = -131.242195 kcal Electronic energy + Delta-G solvation = -18932.971370 eV Core-core repulsion = 15962.529077 eV Total energy + Delta-G solvation = -2970.442292 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.99615 -37.34232 -36.11271 -36.06770 -35.18030 -33.91204 -31.07170 -28.40666 -28.04576 -26.83749 -23.06851 -21.37116 -21.02027 -20.87578 -19.36295 -18.29858 -17.42794 -17.00282 -16.23015 -16.08155 -15.87582 -15.79859 -15.35347 -14.76424 -14.41955 -14.00352 -13.92023 -13.46965 -13.02882 -12.99969 -12.83401 -12.53674 -12.46711 -12.42691 -12.29744 -12.28088 -11.97914 -11.87072 -11.74739 -11.56784 -11.35057 -11.23028 -10.93213 -10.11846 -9.35162 -8.72699 -7.44102 0.41392 1.35212 1.35627 1.51364 2.22304 2.60942 2.95200 3.34895 3.58876 3.72070 3.87164 4.16644 4.27276 4.37109 4.41546 4.48380 4.58862 4.65239 4.66709 4.76706 4.86886 4.94864 4.99338 5.14611 5.18060 5.27273 5.28069 5.32196 5.36572 5.46314 5.61830 5.95966 6.20268 6.36542 6.53386 6.82031 8.23581 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.026245 B = 0.007057 C = 0.005893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.630264 B = 3966.523269 C = 4750.009723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 N -0.691 5.691 4 C 0.078 3.922 5 H 0.067 0.933 6 C -0.102 4.102 7 C -0.113 4.113 8 C -0.145 4.145 9 C 0.142 3.858 10 H 0.070 0.930 11 N -1.104 6.104 12 S 2.721 3.279 13 O -1.048 7.048 14 O -1.047 7.047 15 C -1.035 5.035 16 H 0.124 0.876 17 C 0.069 3.931 18 N -0.897 5.897 19 Si 0.989 3.011 20 H -0.257 1.257 21 H -0.266 1.266 22 H -0.245 1.245 23 H 0.060 0.940 24 H 0.077 0.923 25 H 0.041 0.959 26 H 0.084 0.916 27 H 0.028 0.972 28 H 0.335 0.665 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.418 0.582 36 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.090 -12.964 -9.146 16.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.076 4.076 3 N -0.324 5.324 4 C -0.033 4.033 5 H 0.085 0.915 6 C -0.140 4.140 7 C -0.151 4.151 8 C -0.185 4.185 9 C 0.034 3.966 10 H 0.088 0.912 11 N -0.863 5.863 12 S 2.821 3.179 13 O -1.039 7.039 14 O -1.036 7.036 15 C -1.168 5.168 16 H 0.142 0.858 17 C -0.144 4.144 18 N -0.529 5.529 19 Si 0.808 3.192 20 H -0.181 1.181 21 H -0.190 1.190 22 H -0.168 1.168 23 H 0.079 0.921 24 H 0.096 0.904 25 H 0.061 0.939 26 H 0.103 0.897 27 H 0.046 0.954 28 H 0.153 0.847 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.253 0.747 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.265 -12.736 -8.949 15.904 hybrid contribution 0.744 0.738 0.889 1.374 sum 4.009 -11.998 -8.060 14.999 Atomic orbital electron populations 1.21776 0.94669 1.02468 1.01864 1.22048 0.96058 0.88691 1.00825 1.60613 1.07338 1.14329 1.50085 1.22686 0.87820 0.94835 0.97999 0.91499 1.22474 0.95560 1.01392 0.94590 1.22293 0.97159 0.96954 0.98709 1.22742 0.96946 1.00290 0.98484 1.21602 0.87805 0.87709 0.99511 0.91189 1.55286 1.46359 1.43825 1.40838 0.99837 0.74975 0.71894 0.71149 1.93308 1.59989 1.67886 1.82675 1.93299 1.89135 1.76258 1.44927 1.30960 1.26094 1.29285 1.30492 0.85817 1.26015 1.01273 0.96530 0.90546 1.70005 1.34754 1.29116 1.19006 0.85140 0.76937 0.78166 0.78986 1.18109 1.19008 1.16830 0.92137 0.90417 0.93937 0.89730 0.95410 0.84666 0.90013 0.91234 0.90321 0.90088 0.91332 0.90979 0.74734 0.89285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 10.17 71.98 0.73 -2.30 16 2 C 0.05 1.13 6.26 86.30 0.54 1.68 16 3 N -0.69 -18.81 5.51 -486.03 -2.68 -21.49 16 4 C 0.08 2.04 3.08 45.99 0.14 2.18 16 5 H 0.07 1.59 7.85 -2.39 -0.02 1.57 16 6 C -0.10 -2.15 6.56 31.89 0.21 -1.94 16 7 C -0.11 -2.32 6.83 31.67 0.22 -2.10 16 8 C -0.14 -4.13 6.20 31.32 0.19 -3.94 16 9 C 0.14 4.71 3.38 45.72 0.15 4.86 16 10 H 0.07 2.60 7.54 -2.39 -0.02 2.58 16 11 N -1.10 -43.41 4.20 -166.38 -0.70 -44.11 16 12 S 2.72 145.95 5.00 -56.49 -0.28 145.67 16 13 O -1.05 -63.55 18.02 -128.00 -2.31 -65.85 16 14 O -1.05 -62.24 17.38 -128.00 -2.22 -64.47 16 15 C -1.03 -56.32 9.72 67.73 0.66 -55.66 16 16 H 0.12 6.00 7.05 -2.91 -0.02 5.98 16 17 C 0.07 3.82 5.46 84.65 0.46 4.29 16 18 N -0.90 -53.97 13.19 21.45 0.28 -53.69 16 19 Si 0.99 41.26 29.54 68.60 2.03 43.28 16 20 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 21 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 22 H -0.25 -9.43 7.11 99.48 0.71 -8.72 16 23 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.03 0.59 8.08 -2.39 -0.02 0.57 16 28 H 0.33 10.75 7.65 -89.69 -0.69 10.06 16 29 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.07 2.12 7.55 -2.39 -0.02 2.11 16 34 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 35 H 0.42 15.04 8.32 -96.75 -0.81 14.24 16 36 H 0.30 16.10 8.31 -92.71 -0.77 15.33 16 Total: -1.00 -73.57 307.46 -2.98 -76.55 By element: Atomic # 1 Polarization: 37.44 SS G_CDS: -0.41 Total: 37.03 kcal Atomic # 6 Polarization: -56.24 SS G_CDS: 3.31 Total: -52.93 kcal Atomic # 7 Polarization: -116.19 SS G_CDS: -3.10 Total: -119.29 kcal Atomic # 8 Polarization: -125.79 SS G_CDS: -4.53 Total: -130.32 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.28 kcal Atomic # 16 Polarization: 145.95 SS G_CDS: -0.28 Total: 145.67 kcal Total: -73.57 -2.98 -76.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721908792.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.689 kcal (2) G-P(sol) polarization free energy of solvation -73.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds