Wall clock time and date at job start Mon Mar 30 2020 05:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46897 * 109.47157 * 2 1 4 4 C 1.46896 * 111.00111 * 179.97438 * 3 2 1 5 5 H 1.08997 * 110.05935 * 326.42153 * 4 3 2 6 6 C 1.54265 * 110.03155 * 87.83399 * 4 3 2 7 7 C 1.54887 * 104.19915 * 142.89801 * 6 4 3 8 8 C 1.54893 * 102.74415 * 322.05604 * 7 6 4 9 9 C 1.53870 * 110.03628 * 204.99828 * 4 3 2 10 10 H 1.09001 * 110.07129 * 0.02692 * 9 4 3 11 11 N 1.46503 * 110.03014 * 121.43151 * 9 4 3 12 12 S 1.65611 * 119.99810 * 213.62302 * 11 9 4 13 13 O 1.42102 * 106.40101 * 311.45930 * 12 11 9 14 14 O 1.42103 * 106.39984 * 178.53867 * 12 11 9 15 15 C 1.76199 * 107.21466 * 65.00115 * 12 11 9 16 16 H 1.07995 * 120.00654 * 359.97438 * 15 12 11 17 17 C 1.37880 * 119.99414 * 179.97438 * 15 12 11 18 18 N 1.31511 * 120.00327 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 119.99951 * 179.97438 * 17 15 12 20 20 H 1.48506 * 109.47297 * 59.99744 * 19 17 15 21 21 H 1.48503 * 109.47261 * 299.99924 * 19 17 15 22 22 H 1.48500 * 109.47454 * 179.97438 * 19 17 15 23 23 H 1.09001 * 109.46525 * 300.00240 * 1 2 3 24 24 H 1.09000 * 109.46900 * 59.99523 * 1 2 3 25 25 H 1.08994 * 109.46942 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46649 * 240.00297 * 2 1 3 27 27 H 1.08996 * 109.46745 * 119.99738 * 2 1 3 28 28 H 1.00905 * 111.00147 * 303.95790 * 3 2 1 29 29 H 1.09003 * 110.48705 * 24.21931 * 6 4 3 30 30 H 1.08998 * 110.48708 * 261.57419 * 6 4 3 31 31 H 1.09001 * 110.75745 * 203.74326 * 7 6 4 32 32 H 1.08994 * 110.75936 * 80.36801 * 7 6 4 33 33 H 1.08996 * 110.49120 * 279.26035 * 8 7 6 34 34 H 1.09010 * 110.48190 * 156.62185 * 8 7 6 35 35 H 0.96993 * 120.00383 * 33.62586 * 11 9 4 36 36 H 0.97006 * 119.99995 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 3.4882 1.4242 0.0006 5 1 3.8844 0.5815 0.5672 6 6 4.0185 1.3833 -1.4474 7 6 5.2491 2.3236 -1.4281 8 6 4.7918 3.4654 -0.4866 9 6 3.9800 2.7480 0.6115 10 1 3.1295 3.3618 0.9082 11 7 4.8332 2.4789 1.7716 12 16 4.8306 3.5190 3.0604 13 8 4.9774 4.8258 2.5217 14 8 5.7220 2.9697 4.0211 15 6 3.2231 3.4547 3.7791 16 1 2.4675 2.8099 3.3555 17 6 2.9300 4.2278 4.8825 18 7 3.8503 5.0127 5.3988 19 14 1.2257 4.1603 5.6442 20 1 0.9376 2.7736 6.0909 21 1 0.2165 4.5755 4.6369 22 1 1.1680 5.0775 6.8106 23 1 -0.3632 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6442 1.9013 -0.7814 29 1 3.2644 1.7562 -2.1406 30 1 4.3170 0.3700 -1.7159 31 1 5.4582 2.7069 -2.4268 32 1 6.1202 1.8116 -1.0194 33 1 4.1627 4.1746 -1.0244 34 1 5.6549 3.9716 -0.0538 35 1 5.3997 1.6917 1.7849 36 1 4.7355 5.0475 5.0036 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721908794.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:49 Heat of formation + Delta-G solvation = -108.542831 kcal Electronic energy + Delta-G solvation = -18887.018685 eV Core-core repulsion = 15917.560711 eV Total energy + Delta-G solvation = -2969.457974 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.95872 -35.48100 -35.16971 -34.29089 -33.17207 -32.52436 -30.18324 -27.18467 -25.68513 -25.42608 -22.13529 -20.80116 -19.96619 -19.29378 -17.85797 -16.44786 -16.14297 -15.43715 -15.10766 -14.62392 -14.19078 -14.11221 -13.88304 -13.49912 -13.45128 -12.63195 -12.47662 -12.13704 -11.78976 -11.64481 -11.44839 -11.11530 -11.01645 -10.94915 -10.90370 -10.67185 -10.59080 -10.52256 -10.40745 -10.29365 -10.22364 -9.10412 -9.00924 -8.31999 -8.16415 -7.09429 -5.28354 2.24559 3.29813 3.30224 3.51819 4.12204 4.25110 4.53195 4.66705 4.79981 4.82475 5.01897 5.08925 5.24239 5.45008 5.50458 5.54877 5.58623 5.68129 5.74269 5.76940 5.78806 5.84129 5.98056 6.04154 6.13382 6.22672 6.31579 6.41744 6.51927 6.81583 7.16176 7.46084 7.71859 7.87867 8.17522 8.71933 10.28713 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.017684 B = 0.008409 C = 0.006198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.944532 B = 3329.102122 C = 4516.704717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 N -0.680 5.680 4 C 0.079 3.921 5 H 0.087 0.913 6 C -0.151 4.151 7 C -0.121 4.121 8 C -0.141 4.141 9 C 0.166 3.834 10 H 0.102 0.898 11 N -1.120 6.120 12 S 2.691 3.309 13 O -1.013 7.013 14 O -1.018 7.018 15 C -1.080 5.080 16 H 0.107 0.893 17 C 0.090 3.910 18 N -0.849 5.849 19 Si 1.080 2.920 20 H -0.277 1.277 21 H -0.275 1.275 22 H -0.273 1.273 23 H 0.066 0.934 24 H 0.051 0.949 25 H 0.056 0.944 26 H 0.024 0.976 27 H 0.072 0.928 28 H 0.340 0.660 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.400 0.600 36 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.950 -8.860 -13.682 16.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.074 4.074 3 N -0.310 5.310 4 C -0.033 4.033 5 H 0.105 0.895 6 C -0.191 4.191 7 C -0.159 4.159 8 C -0.181 4.181 9 C 0.057 3.943 10 H 0.120 0.880 11 N -0.873 5.873 12 S 2.792 3.208 13 O -1.003 7.003 14 O -1.008 7.008 15 C -1.215 5.215 16 H 0.125 0.875 17 C -0.128 4.128 18 N -0.478 5.478 19 Si 0.903 3.097 20 H -0.202 1.202 21 H -0.200 1.200 22 H -0.198 1.198 23 H 0.085 0.915 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.043 0.957 27 H 0.090 0.910 28 H 0.159 0.841 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.230 0.770 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.251 -7.493 -11.530 14.393 hybrid contribution 0.787 -1.599 -2.227 2.853 sum -3.464 -9.092 -13.757 16.850 Atomic orbital electron populations 1.21777 0.95105 1.01444 1.02562 1.21934 0.95600 0.89646 1.00228 1.60501 1.07113 1.13374 1.50052 1.22593 0.87358 0.98689 0.94623 0.89506 1.23105 0.98755 0.99765 0.97467 1.22441 0.97325 0.96685 0.99478 1.22915 1.01070 0.97339 0.96742 1.21164 0.92487 0.94944 0.85718 0.87968 1.55766 1.55979 1.42355 1.33213 1.00964 0.76571 0.71972 0.71291 1.93415 1.88630 1.38743 1.79463 1.93421 1.68061 1.79453 1.59842 1.31451 1.21930 1.39771 1.28342 0.87511 1.25943 1.05962 0.88806 0.92118 1.70854 1.04753 1.32600 1.39592 0.83452 0.72448 0.77257 0.76553 1.20212 1.20044 1.19820 0.91464 0.93018 0.92466 0.95728 0.90956 0.84090 0.91478 0.91921 0.91804 0.91513 0.90941 0.90338 0.76956 0.91292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.17 37.16 0.38 -1.13 16 2 C 0.06 0.62 6.23 -3.82 -0.02 0.60 16 3 N -0.68 -8.89 6.17 -105.55 -0.65 -9.54 16 4 C 0.08 1.08 3.00 -66.60 -0.20 0.88 16 5 H 0.09 1.20 7.40 -51.93 -0.38 0.82 16 6 C -0.15 -1.65 6.45 -25.07 -0.16 -1.81 16 7 C -0.12 -1.43 6.91 -24.74 -0.17 -1.60 16 8 C -0.14 -2.14 6.54 -25.07 -0.16 -2.31 16 9 C 0.17 2.85 3.23 -66.82 -0.22 2.64 16 10 H 0.10 1.98 7.68 -51.93 -0.40 1.58 16 11 N -1.12 -22.14 5.41 -3.94 -0.02 -22.16 16 12 S 2.69 71.01 4.30 -107.50 -0.46 70.55 16 13 O -1.01 -29.00 17.40 -57.17 -1.00 -30.00 16 14 O -1.02 -29.67 17.64 -57.17 -1.01 -30.68 16 15 C -1.08 -30.34 9.61 30.60 0.29 -30.05 16 16 H 0.11 2.81 7.81 -52.49 -0.41 2.40 16 17 C 0.09 2.60 5.46 -17.82 -0.10 2.51 16 18 N -0.85 -26.45 13.66 55.43 0.76 -25.70 16 19 Si 1.08 24.61 29.90 -169.99 -5.08 19.53 16 20 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 21 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 22 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 23 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.07 0.88 8.07 -51.93 -0.42 0.46 16 28 H 0.34 3.88 8.11 -39.29 -0.32 3.56 16 29 H 0.07 0.66 7.56 -51.93 -0.39 0.27 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.08 1.34 8.04 -51.92 -0.42 0.93 16 35 H 0.40 6.85 8.64 -34.48 -0.30 6.55 16 36 H 0.28 8.81 6.52 -40.82 -0.27 8.54 16 LS Contribution 308.37 15.07 4.65 4.65 Total: -1.00 -34.86 308.37 -8.66 -43.52 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -5.48 Total: 10.12 kcal Atomic # 6 Polarization: -29.93 SS G_CDS: -0.36 Total: -30.29 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: 0.08 Total: -57.39 kcal Atomic # 8 Polarization: -58.67 SS G_CDS: -2.00 Total: -60.68 kcal Atomic # 14 Polarization: 24.61 SS G_CDS: -5.08 Total: 19.53 kcal Atomic # 16 Polarization: 71.01 SS G_CDS: -0.46 Total: 70.55 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -34.86 -8.66 -43.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721908794.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.025 kcal (2) G-P(sol) polarization free energy of solvation -34.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds