Wall clock time and date at job start Mon Mar 30 2020 05:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46897 * 109.47157 * 2 1 4 4 C 1.46896 * 111.00111 * 179.97438 * 3 2 1 5 5 H 1.08997 * 110.05935 * 326.42153 * 4 3 2 6 6 C 1.54265 * 110.03155 * 87.83399 * 4 3 2 7 7 C 1.54887 * 104.19915 * 142.89801 * 6 4 3 8 8 C 1.54893 * 102.74415 * 322.05604 * 7 6 4 9 9 C 1.53870 * 110.03628 * 204.99828 * 4 3 2 10 10 H 1.09001 * 110.07129 * 0.02692 * 9 4 3 11 11 N 1.46503 * 110.03014 * 121.43151 * 9 4 3 12 12 S 1.65611 * 119.99810 * 213.62302 * 11 9 4 13 13 O 1.42102 * 106.40101 * 311.45930 * 12 11 9 14 14 O 1.42103 * 106.39984 * 178.53867 * 12 11 9 15 15 C 1.76199 * 107.21466 * 65.00115 * 12 11 9 16 16 H 1.07995 * 120.00654 * 359.97438 * 15 12 11 17 17 C 1.37880 * 119.99414 * 179.97438 * 15 12 11 18 18 N 1.31511 * 120.00327 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 119.99951 * 179.97438 * 17 15 12 20 20 H 1.48506 * 109.47297 * 59.99744 * 19 17 15 21 21 H 1.48503 * 109.47261 * 299.99924 * 19 17 15 22 22 H 1.48500 * 109.47454 * 179.97438 * 19 17 15 23 23 H 1.09001 * 109.46525 * 300.00240 * 1 2 3 24 24 H 1.09000 * 109.46900 * 59.99523 * 1 2 3 25 25 H 1.08994 * 109.46942 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46649 * 240.00297 * 2 1 3 27 27 H 1.08996 * 109.46745 * 119.99738 * 2 1 3 28 28 H 1.00905 * 111.00147 * 303.95790 * 3 2 1 29 29 H 1.09003 * 110.48705 * 24.21931 * 6 4 3 30 30 H 1.08998 * 110.48708 * 261.57419 * 6 4 3 31 31 H 1.09001 * 110.75745 * 203.74326 * 7 6 4 32 32 H 1.08994 * 110.75936 * 80.36801 * 7 6 4 33 33 H 1.08996 * 110.49120 * 279.26035 * 8 7 6 34 34 H 1.09010 * 110.48190 * 156.62185 * 8 7 6 35 35 H 0.96993 * 120.00383 * 33.62586 * 11 9 4 36 36 H 0.97006 * 119.99995 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 3.4882 1.4242 0.0006 5 1 3.8844 0.5815 0.5672 6 6 4.0185 1.3833 -1.4474 7 6 5.2491 2.3236 -1.4281 8 6 4.7918 3.4654 -0.4866 9 6 3.9800 2.7480 0.6115 10 1 3.1295 3.3618 0.9082 11 7 4.8332 2.4789 1.7716 12 16 4.8306 3.5190 3.0604 13 8 4.9774 4.8258 2.5217 14 8 5.7220 2.9697 4.0211 15 6 3.2231 3.4547 3.7791 16 1 2.4675 2.8099 3.3555 17 6 2.9300 4.2278 4.8825 18 7 3.8503 5.0127 5.3988 19 14 1.2257 4.1603 5.6442 20 1 0.9376 2.7736 6.0909 21 1 0.2165 4.5755 4.6369 22 1 1.1680 5.0775 6.8106 23 1 -0.3632 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6442 1.9013 -0.7814 29 1 3.2644 1.7562 -2.1406 30 1 4.3170 0.3700 -1.7159 31 1 5.4582 2.7069 -2.4268 32 1 6.1202 1.8116 -1.0194 33 1 4.1627 4.1746 -1.0244 34 1 5.6549 3.9716 -0.0538 35 1 5.3997 1.6917 1.7849 36 1 4.7355 5.0475 5.0036 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721908794.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:48 Heat of formation + Delta-G solvation = -137.454512 kcal Electronic energy + Delta-G solvation = -18888.272389 eV Core-core repulsion = 15917.560711 eV Total energy + Delta-G solvation = -2970.711679 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.09879 -37.65582 -36.53214 -36.30099 -35.34599 -33.97532 -31.10345 -28.36503 -27.68353 -26.78812 -23.01815 -21.84059 -21.54679 -21.14384 -19.76891 -18.29649 -17.53331 -16.79820 -16.62810 -16.27263 -15.81509 -15.69438 -15.07878 -15.00831 -14.60436 -14.45175 -13.59880 -13.45347 -13.08981 -13.02379 -12.97237 -12.75696 -12.70235 -12.62839 -12.43850 -12.15001 -11.97998 -11.96837 -11.88038 -11.66592 -11.57423 -11.18064 -10.81335 -10.17741 -9.39112 -9.21468 -7.59519 0.18884 1.45736 1.50526 1.76805 2.34008 2.60801 2.67913 3.22222 3.40182 3.62444 3.76450 4.00450 4.23338 4.26007 4.38298 4.44767 4.49703 4.53410 4.63032 4.67651 4.70316 4.78282 4.96237 5.00634 5.12845 5.19005 5.24299 5.30904 5.38554 5.40009 5.50669 5.85465 6.16364 6.31469 6.51322 6.57872 7.96538 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.017684 B = 0.008409 C = 0.006198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.944532 B = 3329.102122 C = 4516.704717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.055 3.945 3 N -0.699 5.699 4 C 0.085 3.915 5 H 0.085 0.915 6 C -0.138 4.138 7 C -0.114 4.114 8 C -0.145 4.145 9 C 0.152 3.848 10 H 0.075 0.925 11 N -1.103 6.103 12 S 2.700 3.300 13 O -1.042 7.042 14 O -1.051 7.051 15 C -1.094 5.094 16 H 0.120 0.880 17 C 0.035 3.965 18 N -0.879 5.879 19 Si 1.119 2.881 20 H -0.253 1.253 21 H -0.250 1.250 22 H -0.268 1.268 23 H 0.047 0.953 24 H 0.062 0.938 25 H 0.072 0.928 26 H 0.045 0.955 27 H 0.058 0.942 28 H 0.350 0.650 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.051 0.949 35 H 0.414 0.586 36 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.549 -10.603 -15.662 19.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.073 4.073 3 N -0.331 5.331 4 C -0.027 4.027 5 H 0.103 0.897 6 C -0.177 4.177 7 C -0.152 4.152 8 C -0.185 4.185 9 C 0.045 3.955 10 H 0.093 0.907 11 N -0.862 5.862 12 S 2.802 3.198 13 O -1.032 7.032 14 O -1.041 7.041 15 C -1.228 5.228 16 H 0.138 0.862 17 C -0.175 4.175 18 N -0.510 5.510 19 Si 0.933 3.067 20 H -0.177 1.177 21 H -0.174 1.174 22 H -0.192 1.192 23 H 0.066 0.934 24 H 0.081 0.919 25 H 0.091 0.909 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.170 0.830 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.248 0.752 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.832 -9.255 -13.538 17.406 hybrid contribution 1.301 -1.082 -1.691 2.392 sum -4.531 -10.337 -15.229 18.955 Atomic orbital electron populations 1.21752 0.94241 1.02385 1.02149 1.21955 0.96285 0.88559 1.00522 1.60404 1.06784 1.14863 1.51065 1.22444 0.87999 0.96000 0.96227 0.89717 1.23028 0.98388 1.00795 0.95493 1.22426 0.97781 0.95347 0.99599 1.22911 0.99993 0.98652 0.96932 1.21497 0.91626 0.97301 0.85123 0.90707 1.55179 1.56767 1.41876 1.32381 1.00354 0.75814 0.71978 0.71701 1.93367 1.88755 1.41029 1.80037 1.93361 1.68796 1.79981 1.62006 1.31823 1.23125 1.39495 1.28344 0.86221 1.27772 1.09276 0.87705 0.92778 1.71007 1.04473 1.34849 1.40634 0.83072 0.68071 0.78848 0.76694 1.17651 1.17394 1.19227 0.93392 0.91885 0.90877 0.93676 0.92302 0.83023 0.89796 0.89787 0.89519 0.91383 0.89947 0.92998 0.75217 0.93407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 10.17 71.99 0.73 -1.86 16 2 C 0.06 1.10 6.23 86.31 0.54 1.64 16 3 N -0.70 -16.80 6.17 -487.85 -3.01 -19.81 16 4 C 0.09 2.14 3.00 45.64 0.14 2.27 16 5 H 0.08 2.16 7.40 -2.39 -0.02 2.14 16 6 C -0.14 -2.48 6.45 31.67 0.20 -2.27 16 7 C -0.11 -2.35 6.91 31.89 0.22 -2.13 16 8 C -0.15 -4.29 6.54 31.67 0.21 -4.08 16 9 C 0.15 5.16 3.23 45.71 0.15 5.31 16 10 H 0.07 2.94 7.68 -2.39 -0.02 2.92 16 11 N -1.10 -43.88 5.41 -166.38 -0.90 -44.78 16 12 S 2.70 146.48 4.30 -56.49 -0.24 146.23 16 13 O -1.04 -61.93 17.40 -128.00 -2.23 -64.15 16 14 O -1.05 -63.22 17.64 -128.00 -2.26 -65.48 16 15 C -1.09 -62.15 9.61 67.73 0.65 -61.49 16 16 H 0.12 6.30 7.81 -2.91 -0.02 6.27 16 17 C 0.03 2.02 5.46 84.66 0.46 2.48 16 18 N -0.88 -56.22 13.66 21.45 0.29 -55.93 16 19 Si 1.12 48.43 29.90 68.60 2.05 50.48 16 20 H -0.25 -9.89 7.11 99.48 0.71 -9.19 16 21 H -0.25 -9.75 7.11 99.48 0.71 -9.05 16 22 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 23 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.06 1.32 8.07 -2.39 -0.02 1.30 16 28 H 0.35 7.09 8.11 -89.69 -0.73 6.36 16 29 H 0.08 1.27 7.56 -2.39 -0.02 1.25 16 30 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.05 1.80 8.04 -2.38 -0.02 1.78 16 35 H 0.41 14.09 8.64 -96.75 -0.84 13.26 16 36 H 0.26 17.04 6.52 -92.70 -0.60 16.43 16 Total: -1.00 -77.44 308.37 -3.31 -80.76 By element: Atomic # 1 Polarization: 33.14 SS G_CDS: -0.32 Total: 32.82 kcal Atomic # 6 Polarization: -63.42 SS G_CDS: 3.30 Total: -60.12 kcal Atomic # 7 Polarization: -116.91 SS G_CDS: -3.62 Total: -120.53 kcal Atomic # 8 Polarization: -125.15 SS G_CDS: -4.49 Total: -129.64 kcal Atomic # 14 Polarization: 48.43 SS G_CDS: 2.05 Total: 50.48 kcal Atomic # 16 Polarization: 146.48 SS G_CDS: -0.24 Total: 146.23 kcal Total: -77.44 -3.31 -80.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721908794.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.699 kcal (2) G-P(sol) polarization free energy of solvation -77.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds