Wall clock time and date at job start Mon Mar 30 2020 05:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 110.99590 * 2 1 4 4 H 1.09000 * 109.45891 * 325.02255 * 3 2 1 5 5 C 1.53033 * 109.46320 * 85.00008 * 3 2 1 6 6 C 1.53194 * 109.31145 * 181.37214 * 5 3 2 7 7 N 1.46919 * 108.77459 * 305.35994 * 6 5 3 8 8 S 1.65600 * 120.63226 * 233.58760 * 7 6 5 9 9 O 1.42094 * 106.40399 * 336.46074 * 8 7 6 10 10 O 1.42107 * 106.40194 * 203.54182 * 8 7 6 11 11 C 1.76203 * 107.21803 * 90.00463 * 8 7 6 12 12 H 1.08002 * 119.99736 * 359.97438 * 11 8 7 13 13 C 1.37871 * 119.99719 * 180.27922 * 11 8 7 14 14 N 1.31523 * 119.99908 * 179.72129 * 13 11 8 15 15 Si 1.86800 * 120.00405 * 359.71727 * 13 11 8 16 16 H 1.48500 * 109.47210 * 90.00069 * 15 13 11 17 17 H 1.48504 * 109.47424 * 210.00300 * 15 13 11 18 18 H 1.48502 * 109.46888 * 330.00390 * 15 13 11 19 19 C 1.46928 * 118.73910 * 53.86288 * 7 6 5 20 20 C 1.53043 * 109.44253 * 205.06090 * 3 2 1 21 21 H 1.08997 * 109.49736 * 298.56783 * 20 3 2 22 22 C 1.52997 * 109.49897 * 58.63998 * 20 3 2 23 23 H 1.08999 * 109.47602 * 60.00673 * 1 2 3 24 24 H 1.09004 * 109.46956 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47429 * 299.99819 * 1 2 3 26 26 H 1.00890 * 111.00119 * 236.04225 * 2 1 3 27 27 H 1.09002 * 109.50083 * 61.41333 * 5 3 2 28 28 H 1.09009 * 109.49658 * 301.32047 * 5 3 2 29 29 H 1.09007 * 109.58027 * 185.57602 * 6 5 3 30 30 H 1.08995 * 109.58831 * 65.15406 * 6 5 3 31 31 H 0.96995 * 120.00181 * 179.97438 * 14 13 11 32 32 H 1.09008 * 109.58363 * 65.92248 * 19 7 6 33 33 H 1.08993 * 109.59164 * 186.35002 * 19 7 6 34 34 H 1.08996 * 109.47800 * 59.99763 * 22 20 3 35 35 H 1.09005 * 109.46909 * 180.02562 * 22 20 3 36 36 H 1.09004 * 109.46975 * 299.99204 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3393 2.0123 -0.5892 5 6 2.0607 1.8926 1.4374 6 6 2.5775 3.3347 1.4305 7 7 3.8605 3.3738 0.7157 8 16 5.2023 4.0355 1.4258 9 8 4.7285 4.9392 2.4147 10 8 6.0659 4.4251 0.3667 11 6 6.0275 2.7403 2.2898 12 1 5.6225 1.7392 2.2771 13 6 7.1867 3.0064 2.9872 14 7 7.7997 2.0408 3.6366 15 14 7.8868 4.7381 3.0096 16 1 7.3180 5.4871 4.1588 17 1 9.3643 4.6730 3.1437 18 1 7.5345 5.4308 1.7441 19 6 3.9291 2.8201 -0.6435 20 6 3.3984 1.3787 -0.6113 21 1 4.0611 0.7578 -0.0085 22 6 3.3373 0.8262 -2.0367 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8306 -0.5261 -0.7812 27 1 2.7359 1.2668 2.0210 28 1 1.0648 1.8652 1.8799 29 1 2.7198 3.6767 2.4557 30 1 1.8578 3.9785 0.9249 31 1 8.6154 2.2278 4.1269 32 1 3.3173 3.4227 -1.3149 33 1 4.9634 2.8225 -0.9874 34 1 2.6754 1.4480 -2.6395 35 1 4.3368 0.8311 -2.4715 36 1 2.9562 -0.1948 -2.0145 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721926032.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:46 Heat of formation + Delta-G solvation = -81.099989 kcal Electronic energy + Delta-G solvation = -19233.307171 eV Core-core repulsion = 16265.039208 eV Total energy + Delta-G solvation = -2968.267963 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.99083 -35.69953 -35.17164 -34.41449 -32.99556 -32.60429 -30.42132 -26.59062 -26.35083 -25.47115 -22.53263 -21.78570 -19.87924 -18.49729 -17.48036 -16.78185 -16.01780 -15.33366 -15.17054 -14.81828 -13.98814 -13.88482 -13.85981 -13.40837 -13.19976 -12.83005 -12.68226 -12.54300 -12.31188 -11.94804 -11.81796 -11.41368 -11.35716 -11.03123 -10.79534 -10.69491 -10.61409 -10.46743 -10.31506 -10.02334 -9.75429 -9.18127 -9.08282 -8.40733 -8.25030 -6.76897 -5.29766 2.03108 3.08578 3.19354 3.28424 3.97462 4.12600 4.26805 4.61890 4.82840 4.97567 5.04810 5.34244 5.35590 5.40113 5.49186 5.55333 5.59255 5.64264 5.73702 5.82102 5.86388 5.95138 5.97766 6.06827 6.13879 6.19793 6.25261 6.50110 6.63803 6.73167 7.09910 7.38118 7.41266 7.52263 8.27424 8.74489 10.35543 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.031237 B = 0.006911 C = 0.006833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.147817 B = 4050.738865 C = 4096.693904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.693 5.693 3 C 0.097 3.903 4 H 0.042 0.958 5 C -0.123 4.123 6 C 0.127 3.873 7 N -1.001 6.001 8 S 2.675 3.325 9 O -1.010 7.010 10 O -1.008 7.008 11 C -1.013 5.013 12 H 0.122 0.878 13 C 0.153 3.847 14 N -0.823 5.823 15 Si 0.799 3.201 16 H -0.246 1.246 17 H -0.255 1.255 18 H -0.220 1.220 19 C 0.135 3.865 20 C -0.113 4.113 21 H 0.091 0.909 22 C -0.150 4.150 23 H 0.018 0.982 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.341 0.659 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.094 0.906 30 H 0.057 0.943 31 H 0.280 0.720 32 H 0.058 0.942 33 H 0.094 0.906 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.635 -2.782 -8.368 14.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.326 5.326 3 C -0.012 4.012 4 H 0.060 0.940 5 C -0.162 4.162 6 C 0.000 4.000 7 N -0.837 5.837 8 S 2.778 3.222 9 O -1.000 7.000 10 O -0.998 6.998 11 C -1.147 5.147 12 H 0.140 0.860 13 C -0.066 4.066 14 N -0.453 5.453 15 Si 0.619 3.381 16 H -0.170 1.170 17 H -0.179 1.179 18 H -0.142 1.142 19 C 0.008 3.992 20 C -0.133 4.133 21 H 0.109 0.891 22 C -0.208 4.208 23 H 0.036 0.964 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.161 0.839 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.112 0.888 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.112 0.888 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.224 -2.005 -7.659 13.735 hybrid contribution 0.258 0.091 -0.501 0.570 sum -10.966 -1.914 -8.160 13.802 Atomic orbital electron populations 1.22209 0.88295 1.01382 1.00210 1.60456 1.07276 1.14543 1.50304 1.21495 0.94721 0.88432 0.96589 0.94021 1.21935 1.01477 0.96536 0.96295 1.21271 0.84949 0.95984 0.97775 1.57699 1.24105 1.77833 1.24021 1.01444 0.71854 0.75237 0.73664 1.93393 1.80927 1.65177 1.60506 1.93449 1.64453 1.83767 1.58132 1.30538 1.21641 1.15063 1.47478 0.85991 1.24434 0.94078 0.97430 0.90675 1.69998 1.16694 1.32670 1.25896 0.87902 0.81847 0.84649 0.83670 1.17029 1.17909 1.14227 1.21357 1.02526 0.92016 0.83254 1.21803 0.96942 0.98046 0.96532 0.89071 1.21848 1.02504 1.00308 0.96155 0.96396 0.91820 0.91706 0.83899 0.90142 0.91572 0.88799 0.92507 0.90979 0.92334 0.88752 0.92872 0.91670 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.50 60.06 0.63 0.92 16 2 N -0.69 -8.34 6.66 -113.96 -0.76 -9.10 16 3 C 0.10 1.29 1.95 -67.67 -0.13 1.16 16 4 H 0.04 0.53 7.80 -51.93 -0.40 0.12 16 5 C -0.12 -1.84 5.59 -26.61 -0.15 -1.99 16 6 C 0.13 2.13 6.37 -3.71 -0.02 2.11 16 7 N -1.00 -19.72 3.28 -113.27 -0.37 -20.09 16 8 S 2.67 67.50 4.19 -107.50 -0.45 67.05 16 9 O -1.01 -27.09 15.54 -57.17 -0.89 -27.98 16 10 O -1.01 -27.02 14.74 -57.17 -0.84 -27.86 16 11 C -1.01 -28.42 10.29 30.60 0.31 -28.11 16 12 H 0.12 3.48 8.06 -52.49 -0.42 3.05 16 13 C 0.15 4.43 5.47 -17.82 -0.10 4.34 16 14 N -0.82 -23.97 13.96 55.43 0.77 -23.19 16 15 Si 0.80 20.75 26.53 -169.99 -4.51 16.24 16 16 H -0.25 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.26 -6.07 7.11 56.52 0.40 -5.67 16 18 H -0.22 -5.81 5.61 56.52 0.32 -5.50 16 19 C 0.14 2.25 5.69 -3.48 -0.02 2.23 16 20 C -0.11 -1.61 2.57 -90.27 -0.23 -1.84 16 21 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 22 C -0.15 -1.64 8.94 37.16 0.33 -1.31 16 23 H 0.02 0.16 8.05 -51.93 -0.42 -0.26 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.65 7.41 -51.93 -0.39 0.26 16 26 H 0.34 3.66 6.17 -39.30 -0.24 3.42 16 27 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 28 H 0.07 0.86 7.43 -51.92 -0.39 0.47 16 29 H 0.09 1.68 7.13 -51.92 -0.37 1.31 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.28 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 33 H 0.09 1.67 7.12 -51.93 -0.37 1.30 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.53 6.16 -51.93 -0.32 0.21 16 LS Contribution 292.73 15.07 4.41 4.41 Total: -1.00 -32.21 292.73 -7.51 -39.72 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -5.50 Total: 3.29 kcal Atomic # 6 Polarization: -23.12 SS G_CDS: 0.62 Total: -22.49 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: -0.36 Total: -52.38 kcal Atomic # 8 Polarization: -54.11 SS G_CDS: -1.73 Total: -55.84 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.51 Total: 16.24 kcal Atomic # 16 Polarization: 67.50 SS G_CDS: -0.45 Total: 67.05 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.21 -7.51 -39.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721926032.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.375 kcal (2) G-P(sol) polarization free energy of solvation -32.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds