Wall clock time and date at job start Mon Mar 30 2020 05:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 110.99590 * 2 1 4 4 H 1.09000 * 109.45891 * 325.02255 * 3 2 1 5 5 C 1.53033 * 109.46320 * 85.00008 * 3 2 1 6 6 C 1.53194 * 109.31145 * 181.37214 * 5 3 2 7 7 N 1.46919 * 108.77459 * 305.35994 * 6 5 3 8 8 S 1.65600 * 120.63226 * 233.58760 * 7 6 5 9 9 O 1.42094 * 106.40399 * 336.46074 * 8 7 6 10 10 O 1.42107 * 106.40194 * 203.54182 * 8 7 6 11 11 C 1.76203 * 107.21803 * 90.00463 * 8 7 6 12 12 H 1.08002 * 119.99736 * 359.97438 * 11 8 7 13 13 C 1.37871 * 119.99719 * 180.27922 * 11 8 7 14 14 N 1.31523 * 119.99908 * 179.72129 * 13 11 8 15 15 Si 1.86800 * 120.00405 * 359.71727 * 13 11 8 16 16 H 1.48500 * 109.47210 * 90.00069 * 15 13 11 17 17 H 1.48504 * 109.47424 * 210.00300 * 15 13 11 18 18 H 1.48502 * 109.46888 * 330.00390 * 15 13 11 19 19 C 1.46928 * 118.73910 * 53.86288 * 7 6 5 20 20 C 1.53043 * 109.44253 * 205.06090 * 3 2 1 21 21 H 1.08997 * 109.49736 * 298.56783 * 20 3 2 22 22 C 1.52997 * 109.49897 * 58.63998 * 20 3 2 23 23 H 1.08999 * 109.47602 * 60.00673 * 1 2 3 24 24 H 1.09004 * 109.46956 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47429 * 299.99819 * 1 2 3 26 26 H 1.00890 * 111.00119 * 236.04225 * 2 1 3 27 27 H 1.09002 * 109.50083 * 61.41333 * 5 3 2 28 28 H 1.09009 * 109.49658 * 301.32047 * 5 3 2 29 29 H 1.09007 * 109.58027 * 185.57602 * 6 5 3 30 30 H 1.08995 * 109.58831 * 65.15406 * 6 5 3 31 31 H 0.96995 * 120.00181 * 179.97438 * 14 13 11 32 32 H 1.09008 * 109.58363 * 65.92248 * 19 7 6 33 33 H 1.08993 * 109.59164 * 186.35002 * 19 7 6 34 34 H 1.08996 * 109.47800 * 59.99763 * 22 20 3 35 35 H 1.09005 * 109.46909 * 180.02562 * 22 20 3 36 36 H 1.09004 * 109.46975 * 299.99204 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3393 2.0123 -0.5892 5 6 2.0607 1.8926 1.4374 6 6 2.5775 3.3347 1.4305 7 7 3.8605 3.3738 0.7157 8 16 5.2023 4.0355 1.4258 9 8 4.7285 4.9392 2.4147 10 8 6.0659 4.4251 0.3667 11 6 6.0275 2.7403 2.2898 12 1 5.6225 1.7392 2.2771 13 6 7.1867 3.0064 2.9872 14 7 7.7997 2.0408 3.6366 15 14 7.8868 4.7381 3.0096 16 1 7.3180 5.4871 4.1588 17 1 9.3643 4.6730 3.1437 18 1 7.5345 5.4308 1.7441 19 6 3.9291 2.8201 -0.6435 20 6 3.3984 1.3787 -0.6113 21 1 4.0611 0.7578 -0.0085 22 6 3.3373 0.8262 -2.0367 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8306 -0.5261 -0.7812 27 1 2.7359 1.2668 2.0210 28 1 1.0648 1.8652 1.8799 29 1 2.7198 3.6767 2.4557 30 1 1.8578 3.9785 0.9249 31 1 8.6154 2.2278 4.1269 32 1 3.3173 3.4227 -1.3149 33 1 4.9634 2.8225 -0.9874 34 1 2.6754 1.4480 -2.6395 35 1 4.3368 0.8311 -2.4715 36 1 2.9562 -0.1948 -2.0145 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721926032.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:45 Heat of formation + Delta-G solvation = -107.241996 kcal Electronic energy + Delta-G solvation = -19234.440774 eV Core-core repulsion = 16265.039208 eV Total energy + Delta-G solvation = -2969.401566 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.16820 -37.76943 -36.52066 -36.34259 -35.18314 -33.72823 -31.65550 -28.54831 -27.66473 -26.48654 -23.77944 -22.94688 -21.25392 -20.29384 -19.37533 -18.68877 -17.34485 -17.03735 -16.72881 -15.98973 -15.59067 -15.50897 -15.07286 -15.02832 -14.79911 -14.50458 -13.93588 -13.65964 -13.52655 -13.40008 -13.10212 -13.06713 -12.90266 -12.68142 -12.61218 -12.46871 -12.11034 -11.90410 -11.80196 -11.46286 -11.34193 -11.19451 -11.11163 -9.80619 -9.29705 -8.96727 -7.51940 0.09853 1.02904 1.12499 1.19510 1.87746 2.40413 2.43205 3.25966 3.38335 3.68912 3.80255 3.92659 4.15850 4.21706 4.35039 4.42942 4.54204 4.57216 4.65935 4.69755 4.76688 4.81737 4.85996 4.93860 5.02968 5.11915 5.18163 5.30209 5.36778 5.42730 5.50599 5.87385 6.02527 6.17201 6.53626 6.56822 8.21379 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.031237 B = 0.006911 C = 0.006833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.147817 B = 4050.738865 C = 4096.693904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.706 5.706 3 C 0.104 3.896 4 H 0.062 0.938 5 C -0.120 4.120 6 C 0.118 3.882 7 N -0.999 5.999 8 S 2.694 3.306 9 O -1.028 7.028 10 O -1.026 7.026 11 C -1.035 5.035 12 H 0.101 0.899 13 C 0.107 3.893 14 N -0.855 5.855 15 Si 0.824 3.176 16 H -0.239 1.239 17 H -0.218 1.218 18 H -0.229 1.229 19 C 0.124 3.876 20 C -0.110 4.110 21 H 0.058 0.942 22 C -0.144 4.144 23 H 0.031 0.969 24 H 0.075 0.925 25 H 0.061 0.939 26 H 0.348 0.652 27 H 0.048 0.952 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.291 0.709 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.307 -2.458 -9.837 16.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.340 5.340 3 C -0.006 4.006 4 H 0.080 0.920 5 C -0.160 4.160 6 C -0.007 4.007 7 N -0.838 5.838 8 S 2.796 3.204 9 O -1.018 7.018 10 O -1.016 7.016 11 C -1.167 5.167 12 H 0.119 0.881 13 C -0.109 4.109 14 N -0.485 5.485 15 Si 0.641 3.359 16 H -0.162 1.162 17 H -0.140 1.140 18 H -0.151 1.151 19 C -0.001 4.001 20 C -0.131 4.131 21 H 0.077 0.923 22 C -0.202 4.202 23 H 0.050 0.950 24 H 0.094 0.906 25 H 0.080 0.920 26 H 0.170 0.830 27 H 0.067 0.933 28 H 0.108 0.892 29 H 0.095 0.905 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.110 0.890 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.871 -1.710 -9.113 15.862 hybrid contribution 0.676 -0.096 -0.067 0.686 sum -12.195 -1.806 -9.179 15.370 Atomic orbital electron populations 1.22265 0.86712 1.02419 1.00686 1.60384 1.08829 1.13743 1.51079 1.21372 0.94339 0.89649 0.95235 0.92022 1.21897 1.01723 0.94724 0.97609 1.21563 0.84110 0.97986 0.97086 1.57368 1.23392 1.77817 1.25174 1.00652 0.72397 0.74400 0.72984 1.93357 1.81359 1.65487 1.61589 1.93413 1.66140 1.83896 1.58118 1.31073 1.22164 1.15511 1.47999 0.88111 1.25198 0.94643 1.00416 0.90653 1.70027 1.17632 1.34165 1.26704 0.87511 0.83813 0.81157 0.83451 1.16222 1.14008 1.15106 1.21698 1.02547 0.94052 0.81825 1.21736 0.96957 0.95942 0.98462 0.92316 1.21815 1.03120 1.01464 0.93809 0.95048 0.90619 0.91973 0.83024 0.93342 0.89193 0.90548 0.88973 0.89894 0.88981 0.90481 0.90881 0.91860 0.90901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.50 127.69 1.34 1.81 16 2 N -0.71 -15.27 6.66 -514.46 -3.43 -18.70 16 3 C 0.10 2.52 1.95 44.94 0.09 2.60 16 4 H 0.06 1.29 7.80 -2.39 -0.02 1.27 16 5 C -0.12 -3.45 5.59 30.67 0.17 -3.27 16 6 C 0.12 3.83 6.37 86.36 0.55 4.38 16 7 N -1.00 -38.89 3.28 -512.28 -1.68 -40.57 16 8 S 2.69 137.30 4.19 -56.49 -0.24 137.06 16 9 O -1.03 -55.35 15.54 -128.00 -1.99 -57.34 16 10 O -1.03 -55.21 14.74 -128.00 -1.89 -57.09 16 11 C -1.04 -60.05 10.29 67.73 0.70 -59.35 16 12 H 0.10 6.08 8.06 -2.91 -0.02 6.05 16 13 C 0.11 6.32 5.47 84.65 0.46 6.79 16 14 N -0.85 -50.72 13.96 21.45 0.30 -50.42 16 15 Si 0.82 41.92 26.53 68.60 1.82 43.74 16 16 H -0.24 -11.78 7.11 99.48 0.71 -11.07 16 17 H -0.22 -9.74 7.11 99.48 0.71 -9.03 16 18 H -0.23 -11.92 5.61 99.48 0.56 -11.36 16 19 C 0.12 3.97 5.69 86.51 0.49 4.47 16 20 C -0.11 -3.01 2.57 -10.57 -0.03 -3.03 16 21 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 22 C -0.14 -2.78 8.94 71.98 0.64 -2.13 16 23 H 0.03 0.44 8.05 -2.39 -0.02 0.42 16 24 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.06 1.06 7.41 -2.39 -0.02 1.04 16 26 H 0.35 6.56 6.17 -89.70 -0.55 6.00 16 27 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.09 2.14 7.43 -2.38 -0.02 2.12 16 29 H 0.08 2.74 7.13 -2.38 -0.02 2.72 16 30 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.29 15.50 8.31 -92.71 -0.77 14.73 16 32 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 33 H 0.08 2.72 7.12 -2.39 -0.02 2.71 16 34 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.07 1.17 6.16 -2.38 -0.01 1.16 16 Total: -1.00 -70.26 292.73 -2.32 -72.57 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 0.37 Total: 18.48 kcal Atomic # 6 Polarization: -52.16 SS G_CDS: 4.42 Total: -47.74 kcal Atomic # 7 Polarization: -104.88 SS G_CDS: -4.81 Total: -109.69 kcal Atomic # 8 Polarization: -110.55 SS G_CDS: -3.88 Total: -114.43 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 1.82 Total: 43.74 kcal Atomic # 16 Polarization: 137.30 SS G_CDS: -0.24 Total: 137.06 kcal Total: -70.26 -2.32 -72.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721926032.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.668 kcal (2) G-P(sol) polarization free energy of solvation -70.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds