Wall clock time and date at job start Mon Mar 30 2020 05:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46907 * 111.00007 * 2 1 4 4 H 1.09005 * 109.45566 * 35.02860 * 3 2 1 5 5 C 1.53038 * 109.46064 * 275.07131 * 3 2 1 6 6 C 1.53195 * 109.31078 * 178.61378 * 5 3 2 7 7 N 1.47207 * 108.85456 * 54.64814 * 6 5 3 8 8 S 1.65599 * 120.81456 * 126.34442 * 7 6 5 9 9 O 1.42102 * 106.40180 * 23.67420 * 8 7 6 10 10 O 1.42098 * 106.40369 * 156.59789 * 8 7 6 11 11 C 1.76202 * 107.21591 * 270.13963 * 8 7 6 12 12 H 1.07998 * 120.00258 * 359.97438 * 11 8 7 13 13 C 1.37875 * 119.99626 * 180.02562 * 11 8 7 14 14 N 1.31522 * 119.99880 * 179.97438 * 13 11 8 15 15 Si 1.86804 * 120.00508 * 359.97438 * 13 11 8 16 16 H 1.48502 * 109.47026 * 90.00100 * 15 13 11 17 17 H 1.48500 * 109.47463 * 210.00333 * 15 13 11 18 18 H 1.48506 * 109.46977 * 330.00539 * 15 13 11 19 19 C 1.46926 * 118.55531 * 306.47735 * 7 6 5 20 20 C 1.53035 * 109.45982 * 154.99839 * 3 2 1 21 21 H 1.09003 * 109.49576 * 61.43676 * 20 3 2 22 22 C 1.53005 * 109.49699 * 301.34067 * 20 3 2 23 23 H 1.08999 * 109.47027 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.46884 * 299.99843 * 1 2 3 25 25 H 1.09009 * 109.46815 * 60.00086 * 1 2 3 26 26 H 1.00899 * 110.99852 * 236.05072 * 2 1 3 27 27 H 1.09002 * 109.49557 * 298.56226 * 5 3 2 28 28 H 1.09001 * 109.50153 * 58.62700 * 5 3 2 29 29 H 1.08996 * 109.58670 * 174.42176 * 6 5 3 30 30 H 1.09002 * 109.58549 * 294.69988 * 6 5 3 31 31 H 0.96996 * 119.99577 * 179.97438 * 14 13 11 32 32 H 1.09002 * 109.58861 * 293.68122 * 19 7 6 33 33 H 1.08996 * 109.58519 * 173.40013 * 19 7 6 34 34 H 1.08994 * 109.47353 * 300.15786 * 22 20 3 35 35 H 1.08999 * 109.47017 * 60.16480 * 22 20 3 36 36 H 1.09003 * 109.46611 * 180.15993 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 1 1.3399 2.0121 0.5899 5 6 2.0591 1.8932 -1.4373 6 6 2.5758 3.3354 -1.4304 7 7 3.8623 3.3764 -0.7161 8 16 5.2053 4.0372 -1.4246 9 8 4.7332 4.9430 -2.4124 10 8 6.0690 4.4239 -0.3647 11 6 6.0288 2.7421 -2.2903 12 1 5.6228 1.7414 -2.2786 13 6 7.1922 3.0061 -2.9816 14 7 7.8072 2.0394 -3.6273 15 14 7.8949 4.7368 -3.0011 16 1 8.8289 4.9048 -1.8589 17 1 8.6251 4.9603 -4.2747 18 1 6.7892 5.7214 -2.8852 19 6 3.9309 2.8151 0.6400 20 6 3.3991 1.3788 0.6098 21 1 4.0613 0.7582 0.0061 22 6 3.3393 0.8263 2.0354 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8901 26 1 1.8306 -0.5261 -0.7814 27 1 2.7340 1.2678 -2.0218 28 1 1.0630 1.8652 -1.8790 29 1 2.7169 3.6779 -2.4554 30 1 1.8552 3.9792 -0.9260 31 1 8.6254 2.2253 -4.1139 32 1 3.3220 3.4161 1.3155 33 1 4.9653 2.8146 0.9834 34 1 2.6759 1.4466 2.6380 35 1 2.9609 -0.1957 2.0134 36 1 4.3388 0.8344 2.4703 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721926033.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:50 Heat of formation + Delta-G solvation = -84.169958 kcal Electronic energy + Delta-G solvation = -19232.349634 eV Core-core repulsion = 16263.948547 eV Total energy + Delta-G solvation = -2968.401087 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.94654 -35.71228 -35.12307 -34.42779 -33.02317 -32.58687 -30.38991 -26.44568 -26.37538 -25.26116 -22.54640 -21.91119 -20.03357 -18.56794 -17.48580 -16.78554 -15.56561 -15.29372 -15.02265 -14.85199 -14.51679 -13.89326 -13.68264 -13.45530 -13.07200 -12.82030 -12.60781 -12.46482 -12.16052 -11.80317 -11.66821 -11.55972 -11.34157 -11.05234 -10.83683 -10.69936 -10.56939 -10.54607 -10.36403 -10.10484 -9.75386 -9.20314 -9.11020 -8.40476 -8.20036 -6.79713 -5.32688 2.01542 3.07015 3.17764 3.26892 3.95586 4.13499 4.27639 4.59504 4.85275 5.02884 5.22014 5.28375 5.33959 5.41593 5.45498 5.58377 5.65466 5.75614 5.78839 5.84099 5.86400 6.00565 6.04269 6.14282 6.21883 6.30465 6.36804 6.47155 6.64406 6.73460 7.06364 7.37269 7.39009 7.49508 8.23012 8.71703 10.32696 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.031131 B = 0.006925 C = 0.006838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.210949 B = 4042.425940 C = 4093.538403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.689 5.689 3 C 0.096 3.904 4 H 0.075 0.925 5 C -0.165 4.165 6 C 0.132 3.868 7 N -1.002 6.002 8 S 2.675 3.325 9 O -1.008 7.008 10 O -1.009 7.009 11 C -1.013 5.013 12 H 0.121 0.879 13 C 0.153 3.847 14 N -0.824 5.824 15 Si 0.800 3.200 16 H -0.246 1.246 17 H -0.255 1.255 18 H -0.220 1.220 19 C 0.130 3.870 20 C -0.096 4.096 21 H 0.080 0.920 22 C -0.134 4.134 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.020 0.980 26 H 0.342 0.658 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.059 0.941 31 H 0.280 0.720 32 H 0.058 0.942 33 H 0.093 0.907 34 H 0.046 0.954 35 H 0.068 0.932 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.938 -2.847 6.514 13.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.318 5.318 3 C -0.014 4.014 4 H 0.093 0.907 5 C -0.206 4.206 6 C 0.006 3.994 7 N -0.837 5.837 8 S 2.778 3.222 9 O -0.998 6.998 10 O -0.999 6.999 11 C -1.148 5.148 12 H 0.139 0.861 13 C -0.066 4.066 14 N -0.453 5.453 15 Si 0.620 3.380 16 H -0.170 1.170 17 H -0.179 1.179 18 H -0.142 1.142 19 C 0.004 3.996 20 C -0.117 4.117 21 H 0.098 0.902 22 C -0.192 4.192 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.039 0.961 26 H 0.160 0.840 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.109 0.891 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.111 0.889 34 H 0.065 0.935 35 H 0.087 0.913 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.534 -2.070 7.173 13.740 hybrid contribution 0.297 0.129 -1.391 1.428 sum -11.238 -1.941 5.783 12.786 Atomic orbital electron populations 1.22185 0.88406 1.01381 1.00168 1.60555 1.07173 1.14126 1.49907 1.21578 0.96280 0.88654 0.94923 0.90690 1.22652 1.01167 0.98531 0.98221 1.21175 0.85096 0.95390 0.97767 1.57787 1.23876 1.77696 1.24386 1.01429 0.71979 0.75235 0.73509 1.93448 1.81176 1.64848 1.60346 1.93396 1.64612 1.83972 1.57945 1.30543 1.21418 1.15090 1.47734 0.86138 1.24436 0.94095 0.97505 0.90592 1.69994 1.16442 1.32720 1.26146 0.87894 0.84341 0.84880 0.80913 1.16984 1.17898 1.14220 1.21356 1.02595 0.92620 0.83040 1.21491 0.95830 0.96846 0.97528 0.90190 1.21636 1.00927 1.01706 0.94923 0.91846 0.92003 0.96109 0.84004 0.90623 0.91631 0.89077 0.92311 0.90957 0.92320 0.88858 0.93491 0.91344 0.93085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.50 60.07 0.63 0.90 16 2 N -0.69 -7.85 5.78 -113.96 -0.66 -8.51 16 3 C 0.10 1.23 1.89 -67.67 -0.13 1.10 16 4 H 0.07 0.93 7.80 -51.93 -0.40 0.53 16 5 C -0.17 -2.29 5.33 -26.61 -0.14 -2.43 16 6 C 0.13 2.18 6.39 -3.56 -0.02 2.16 16 7 N -1.00 -19.62 3.30 -113.31 -0.37 -19.99 16 8 S 2.68 67.35 4.19 -107.50 -0.45 66.90 16 9 O -1.01 -27.04 14.76 -57.17 -0.84 -27.88 16 10 O -1.01 -27.04 15.54 -57.17 -0.89 -27.93 16 11 C -1.01 -28.26 10.29 30.60 0.31 -27.95 16 12 H 0.12 3.39 8.06 -52.49 -0.42 2.97 16 13 C 0.15 4.41 5.47 -17.82 -0.10 4.31 16 14 N -0.82 -23.83 13.96 55.43 0.77 -23.06 16 15 Si 0.80 20.70 26.54 -169.99 -4.51 16.19 16 16 H -0.25 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.25 -6.05 7.11 56.52 0.40 -5.65 16 18 H -0.22 -5.81 5.61 56.52 0.32 -5.49 16 19 C 0.13 2.20 5.65 -3.71 -0.02 2.18 16 20 C -0.10 -1.41 2.60 -90.50 -0.23 -1.64 16 21 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 22 C -0.13 -1.67 9.02 37.16 0.34 -1.34 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.57 8.05 -51.93 -0.42 0.15 16 25 H 0.02 0.19 7.41 -51.92 -0.38 -0.20 16 26 H 0.34 3.84 8.57 -39.29 -0.34 3.50 16 27 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 28 H 0.07 0.77 7.42 -51.93 -0.39 0.39 16 29 H 0.09 1.60 7.15 -51.93 -0.37 1.23 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.09 1.69 7.12 -51.93 -0.37 1.32 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.84 7.57 -51.93 -0.39 0.45 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 295.49 15.07 4.45 4.45 Total: -1.00 -31.72 295.49 -7.53 -39.26 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -5.67 Total: 3.29 kcal Atomic # 6 Polarization: -23.35 SS G_CDS: 0.63 Total: -22.71 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: -0.26 Total: -51.56 kcal Atomic # 8 Polarization: -54.08 SS G_CDS: -1.73 Total: -55.81 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.51 Total: 16.19 kcal Atomic # 16 Polarization: 67.35 SS G_CDS: -0.45 Total: 66.90 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.72 -7.53 -39.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721926033.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.914 kcal (2) G-P(sol) polarization free energy of solvation -31.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds