Wall clock time and date at job start Mon Mar 30 2020 05:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46906 * 109.47302 * 2 1 4 4 C 1.46899 * 111.00346 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.49375 * 35.06188 * 4 3 2 6 6 C 1.53039 * 109.49808 * 274.99826 * 4 3 2 7 7 C 1.53035 * 109.54060 * 178.68049 * 6 4 3 8 8 C 1.53196 * 109.31202 * 61.36404 * 7 6 4 9 9 N 1.46929 * 108.77620 * 305.36854 * 8 7 6 10 10 S 1.65598 * 120.62986 * 233.60907 * 9 8 7 11 11 O 1.42098 * 106.40054 * 203.53927 * 10 9 8 12 12 O 1.42101 * 106.40303 * 336.45641 * 10 9 8 13 13 C 1.76202 * 107.22042 * 89.99777 * 10 9 8 14 14 H 1.08001 * 119.99691 * 359.97438 * 13 10 9 15 15 C 1.37876 * 120.00002 * 179.97438 * 13 10 9 16 16 N 1.31514 * 120.00219 * 0.02562 * 15 13 10 17 17 Si 1.86796 * 119.99851 * 179.97438 * 15 13 10 18 18 H 1.48497 * 109.47319 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46803 * 120.00232 * 17 15 13 20 20 H 1.48502 * 109.47114 * 239.99920 * 17 15 13 21 21 C 1.46923 * 118.74013 * 53.60152 * 9 8 7 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00356 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00337 * 1 2 3 25 25 H 1.08998 * 109.47533 * 119.99464 * 2 1 3 26 26 H 1.08996 * 109.47853 * 239.99807 * 2 1 3 27 27 H 1.00902 * 110.99679 * 303.95419 * 3 2 1 28 28 H 1.08998 * 109.46164 * 298.70785 * 6 4 3 29 29 H 1.09003 * 109.46150 * 58.65948 * 6 4 3 30 30 H 1.08996 * 109.49798 * 181.31772 * 7 6 4 31 31 H 1.09008 * 109.49807 * 301.41695 * 7 6 4 32 32 H 1.09005 * 109.58518 * 65.14981 * 8 7 6 33 33 H 1.08997 * 109.58672 * 185.58130 * 8 7 6 34 34 H 0.97000 * 120.00021 * 180.02562 * 16 15 13 35 35 H 1.08999 * 109.58730 * 186.60303 * 21 9 8 36 36 H 1.08999 * 109.58608 * 66.18351 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4882 1.4243 0.0006 5 1 3.8745 0.5931 -0.5894 6 6 4.0015 1.3125 1.4380 7 6 5.5319 1.3202 1.4370 8 6 6.0315 2.6425 0.8466 9 7 5.4262 2.8271 -0.4794 10 16 6.3734 3.1188 -1.8061 11 8 5.5444 3.7769 -2.7541 12 8 7.5876 3.6729 -1.3182 13 6 6.7860 1.5554 -2.5064 14 1 6.4205 0.6466 -2.0515 15 6 7.5754 1.4923 -3.6350 16 7 8.0208 2.5990 -4.1887 17 14 8.0133 -0.1651 -4.3770 18 1 7.3928 -1.2475 -3.5717 19 1 7.5059 -0.2329 -5.7710 20 1 9.4889 -0.3323 -4.3786 21 6 3.9646 2.7477 -0.6061 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.6442 1.9013 -0.7814 28 1 3.6345 2.1568 2.0214 29 1 3.6434 0.3828 1.8803 30 1 5.8969 1.2170 2.4588 31 1 5.8995 0.4903 0.8333 32 1 5.7413 3.4665 1.4985 33 1 7.1170 2.6135 0.7519 34 1 8.5758 2.5546 -4.9830 35 1 3.6863 2.7882 -1.6592 36 1 3.5059 3.5803 -0.0726 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721928125.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:02 Heat of formation + Delta-G solvation = -101.339002 kcal Electronic energy + Delta-G solvation = -18962.756123 eV Core-core repulsion = 15993.610530 eV Total energy + Delta-G solvation = -2969.145593 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.55491 -35.57580 -35.25306 -33.97098 -33.11158 -31.63975 -31.08943 -27.56274 -26.14007 -24.12313 -22.39492 -21.78261 -19.91699 -18.49914 -17.43921 -16.31643 -15.74261 -15.21904 -15.08234 -14.79435 -14.40808 -13.97516 -13.74570 -13.57461 -13.00899 -12.91279 -12.68504 -12.04067 -11.84890 -11.71602 -11.41517 -11.30634 -11.25560 -10.97994 -10.75159 -10.61873 -10.60065 -10.52414 -10.30525 -10.05081 -9.95266 -9.27479 -8.90357 -8.39577 -8.15822 -6.71075 -5.33089 2.24599 3.03104 3.11507 3.18365 4.00951 4.16582 4.61555 4.63497 4.98025 5.10082 5.16480 5.28224 5.34892 5.44677 5.51715 5.67222 5.76342 5.82571 5.86498 5.92212 5.99417 6.05537 6.10324 6.20110 6.23261 6.27616 6.33107 6.43593 6.62517 6.85592 7.12933 7.31299 7.44036 7.60503 7.96746 8.87809 10.22452 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.020279 B = 0.007336 C = 0.006403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.395695 B = 3815.838831 C = 4371.580514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 N -0.687 5.687 4 C 0.069 3.931 5 H 0.053 0.947 6 C -0.098 4.098 7 C -0.136 4.136 8 C 0.125 3.875 9 N -1.010 6.010 10 S 2.715 3.285 11 O -1.005 7.005 12 O -1.003 7.003 13 C -1.019 5.019 14 H 0.101 0.899 15 C 0.133 3.867 16 N -0.846 5.846 17 Si 0.919 3.081 18 H -0.263 1.263 19 H -0.271 1.271 20 H -0.270 1.270 21 C 0.128 3.872 22 H 0.056 0.944 23 H 0.053 0.947 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.030 0.970 27 H 0.342 0.658 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.091 0.909 34 H 0.290 0.710 35 H 0.087 0.913 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.584 -5.454 8.750 14.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.077 4.077 3 N -0.319 5.319 4 C -0.042 4.042 5 H 0.071 0.929 6 C -0.137 4.137 7 C -0.176 4.176 8 C -0.001 4.001 9 N -0.844 5.844 10 S 2.816 3.184 11 O -0.995 6.995 12 O -0.993 6.993 13 C -1.152 5.152 14 H 0.119 0.881 15 C -0.085 4.085 16 N -0.475 5.475 17 Si 0.743 3.257 18 H -0.187 1.187 19 H -0.196 1.196 20 H -0.195 1.195 21 C 0.001 3.999 22 H 0.075 0.925 23 H 0.072 0.928 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.048 0.952 27 H 0.160 0.840 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.109 0.891 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.284 -4.385 9.008 13.659 hybrid contribution 0.405 -1.864 -1.367 2.347 sum -8.879 -6.250 7.641 13.277 Atomic orbital electron populations 1.21763 0.95192 1.01422 1.02305 1.21953 0.95325 0.89845 1.00554 1.60528 1.07893 1.13468 1.49989 1.21955 0.86635 0.98432 0.97162 0.92908 1.21411 0.94733 1.01668 0.95859 1.21958 0.95802 0.98954 1.00858 1.21227 0.98590 0.96180 0.84068 1.58171 1.14771 1.89164 1.22342 1.00532 0.71493 0.76040 0.70362 1.93349 1.69571 1.76544 1.60026 1.93352 1.45306 1.80060 1.80620 1.30653 1.44973 1.16060 1.23528 0.88072 1.24750 0.90973 0.98819 0.93960 1.69904 1.29285 1.28271 1.20085 0.86163 0.78845 0.81700 0.79038 1.18690 1.19618 1.19536 1.21258 0.81132 0.95993 1.01514 0.92479 0.92805 0.91972 0.91182 0.95201 0.84006 0.91503 0.92606 0.91258 0.91343 0.92382 0.89118 0.89934 0.89455 0.91594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 10.17 37.16 0.38 -1.00 16 2 C 0.05 0.59 6.20 -3.82 -0.02 0.57 16 3 N -0.69 -8.74 6.31 -106.60 -0.67 -9.42 16 4 C 0.07 1.03 2.64 -67.60 -0.18 0.86 16 5 H 0.05 0.87 7.80 -51.93 -0.41 0.46 16 6 C -0.10 -1.33 5.39 -26.69 -0.14 -1.48 16 7 C -0.14 -1.95 6.08 -26.61 -0.16 -2.11 16 8 C 0.13 2.17 6.38 -3.71 -0.02 2.14 16 9 N -1.01 -20.61 3.29 -113.52 -0.37 -20.99 16 10 S 2.71 72.41 4.97 -107.50 -0.53 71.88 16 11 O -1.00 -29.30 16.73 -57.17 -0.96 -30.26 16 12 O -1.00 -29.32 16.73 -57.17 -0.96 -30.28 16 13 C -1.02 -27.99 9.75 30.60 0.30 -27.69 16 14 H 0.10 2.57 7.81 -52.49 -0.41 2.16 16 15 C 0.13 3.71 5.46 -17.82 -0.10 3.61 16 16 N -0.85 -24.92 13.19 55.43 0.73 -24.18 16 17 Si 0.92 20.58 29.54 -169.99 -5.02 15.56 16 18 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 19 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 20 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 21 C 0.13 2.24 5.64 -3.71 -0.02 2.22 16 22 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.78 7.42 -51.93 -0.39 0.39 16 26 H 0.03 0.35 8.06 -51.93 -0.42 -0.06 16 27 H 0.34 4.13 8.37 -39.29 -0.33 3.80 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.69 7.43 -51.93 -0.39 0.31 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.09 1.67 7.13 -51.93 -0.37 1.30 16 34 H 0.29 7.66 8.31 -40.82 -0.34 7.32 16 35 H 0.09 1.62 7.13 -51.93 -0.37 1.25 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 304.39 15.07 4.59 4.59 Total: -1.00 -33.66 304.39 -8.76 -42.42 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -5.59 Total: 3.56 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: 0.03 Total: -22.88 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: -0.31 Total: -54.59 kcal Atomic # 8 Polarization: -58.62 SS G_CDS: -1.91 Total: -60.54 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: 72.41 SS G_CDS: -0.53 Total: 71.88 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.66 -8.76 -42.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721928125.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.924 kcal (2) G-P(sol) polarization free energy of solvation -33.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds