Wall clock time and date at job start Mon Mar 30 2020 05:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46906 * 109.47302 * 2 1 4 4 C 1.46899 * 111.00346 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.49375 * 35.06188 * 4 3 2 6 6 C 1.53039 * 109.49808 * 274.99826 * 4 3 2 7 7 C 1.53035 * 109.54060 * 178.68049 * 6 4 3 8 8 C 1.53196 * 109.31202 * 61.36404 * 7 6 4 9 9 N 1.46929 * 108.77620 * 305.36854 * 8 7 6 10 10 S 1.65598 * 120.62986 * 233.60907 * 9 8 7 11 11 O 1.42098 * 106.40054 * 203.53927 * 10 9 8 12 12 O 1.42101 * 106.40303 * 336.45641 * 10 9 8 13 13 C 1.76202 * 107.22042 * 89.99777 * 10 9 8 14 14 H 1.08001 * 119.99691 * 359.97438 * 13 10 9 15 15 C 1.37876 * 120.00002 * 179.97438 * 13 10 9 16 16 N 1.31514 * 120.00219 * 0.02562 * 15 13 10 17 17 Si 1.86796 * 119.99851 * 179.97438 * 15 13 10 18 18 H 1.48497 * 109.47319 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46803 * 120.00232 * 17 15 13 20 20 H 1.48502 * 109.47114 * 239.99920 * 17 15 13 21 21 C 1.46923 * 118.74013 * 53.60152 * 9 8 7 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00356 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00337 * 1 2 3 25 25 H 1.08998 * 109.47533 * 119.99464 * 2 1 3 26 26 H 1.08996 * 109.47853 * 239.99807 * 2 1 3 27 27 H 1.00902 * 110.99679 * 303.95419 * 3 2 1 28 28 H 1.08998 * 109.46164 * 298.70785 * 6 4 3 29 29 H 1.09003 * 109.46150 * 58.65948 * 6 4 3 30 30 H 1.08996 * 109.49798 * 181.31772 * 7 6 4 31 31 H 1.09008 * 109.49807 * 301.41695 * 7 6 4 32 32 H 1.09005 * 109.58518 * 65.14981 * 8 7 6 33 33 H 1.08997 * 109.58672 * 185.58130 * 8 7 6 34 34 H 0.97000 * 120.00021 * 180.02562 * 16 15 13 35 35 H 1.08999 * 109.58730 * 186.60303 * 21 9 8 36 36 H 1.08999 * 109.58608 * 66.18351 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4882 1.4243 0.0006 5 1 3.8745 0.5931 -0.5894 6 6 4.0015 1.3125 1.4380 7 6 5.5319 1.3202 1.4370 8 6 6.0315 2.6425 0.8466 9 7 5.4262 2.8271 -0.4794 10 16 6.3734 3.1188 -1.8061 11 8 5.5444 3.7769 -2.7541 12 8 7.5876 3.6729 -1.3182 13 6 6.7860 1.5554 -2.5064 14 1 6.4205 0.6466 -2.0515 15 6 7.5754 1.4923 -3.6350 16 7 8.0208 2.5990 -4.1887 17 14 8.0133 -0.1651 -4.3770 18 1 7.3928 -1.2475 -3.5717 19 1 7.5059 -0.2329 -5.7710 20 1 9.4889 -0.3323 -4.3786 21 6 3.9646 2.7477 -0.6061 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.6442 1.9013 -0.7814 28 1 3.6345 2.1568 2.0214 29 1 3.6434 0.3828 1.8803 30 1 5.8969 1.2170 2.4588 31 1 5.8995 0.4903 0.8333 32 1 5.7413 3.4665 1.4985 33 1 7.1170 2.6135 0.7519 34 1 8.5758 2.5546 -4.9830 35 1 3.6863 2.7882 -1.6592 36 1 3.5059 3.5803 -0.0726 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721928125.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:02 Heat of formation + Delta-G solvation = -128.360535 kcal Electronic energy + Delta-G solvation = -18963.927865 eV Core-core repulsion = 15993.610530 eV Total energy + Delta-G solvation = -2970.317334 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.81645 -37.52055 -36.64873 -36.17827 -35.21475 -32.95662 -32.20099 -28.64423 -28.29262 -25.48166 -23.58063 -22.79265 -21.38092 -20.33863 -19.23858 -18.34576 -17.09456 -16.93335 -16.58048 -16.04073 -15.91354 -15.54606 -15.30116 -14.73636 -14.48585 -14.28526 -14.00637 -13.82304 -13.37499 -13.06665 -12.89227 -12.67841 -12.60971 -12.53750 -12.41507 -12.32893 -12.27561 -12.04878 -11.72797 -11.57575 -11.39702 -11.29878 -10.93297 -9.80624 -9.39416 -8.77531 -7.51554 0.26193 1.29203 1.30038 1.47575 2.16679 2.54022 2.72695 3.23977 3.72568 3.78606 3.95306 4.11734 4.15360 4.28850 4.36600 4.40143 4.47500 4.50428 4.61746 4.69884 4.84175 4.89900 4.97924 5.05603 5.09642 5.15446 5.21863 5.22103 5.36288 5.41214 5.49467 5.87279 5.89809 6.11820 6.44700 6.74878 8.17909 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.020279 B = 0.007336 C = 0.006403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.395695 B = 3815.838831 C = 4371.580514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.050 3.950 3 N -0.682 5.682 4 C 0.076 3.924 5 H 0.035 0.965 6 C -0.092 4.092 7 C -0.130 4.130 8 C 0.114 3.886 9 N -1.006 6.006 10 S 2.717 3.283 11 O -1.041 7.041 12 O -1.039 7.039 13 C -1.036 5.036 14 H 0.115 0.885 15 C 0.070 3.930 16 N -0.894 5.894 17 Si 0.988 3.012 18 H -0.249 1.249 19 H -0.259 1.259 20 H -0.257 1.257 21 C 0.122 3.878 22 H 0.071 0.929 23 H 0.053 0.947 24 H 0.063 0.937 25 H 0.075 0.925 26 H 0.021 0.979 27 H 0.344 0.656 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.055 0.945 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.299 0.701 35 H 0.068 0.932 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.687 -7.506 10.088 16.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.079 4.079 3 N -0.314 5.314 4 C -0.036 4.036 5 H 0.053 0.947 6 C -0.130 4.130 7 C -0.169 4.169 8 C -0.011 4.011 9 N -0.845 5.845 10 S 2.819 3.181 11 O -1.032 7.032 12 O -1.030 7.030 13 C -1.170 5.170 14 H 0.133 0.867 15 C -0.143 4.143 16 N -0.526 5.526 17 Si 0.806 3.194 18 H -0.172 1.172 19 H -0.183 1.183 20 H -0.181 1.181 21 C -0.004 4.004 22 H 0.090 0.910 23 H 0.072 0.928 24 H 0.082 0.918 25 H 0.094 0.906 26 H 0.039 0.961 27 H 0.162 0.838 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.121 0.879 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.109 0.891 35 H 0.086 0.914 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.399 -6.423 10.360 16.023 hybrid contribution 0.684 -1.172 -1.713 2.185 sum -9.715 -7.595 8.647 15.061 Atomic orbital electron populations 1.21718 0.93481 1.02435 1.02425 1.22049 0.96722 0.88724 1.00409 1.60605 1.06223 1.14574 1.50023 1.21833 0.88034 0.95857 0.97840 0.94735 1.21387 0.93888 1.03075 0.94699 1.21942 0.96465 0.96318 1.02187 1.21559 0.97670 0.99133 0.82732 1.57666 1.15634 1.89217 1.21951 1.00058 0.71115 0.75980 0.70914 1.93288 1.70137 1.77501 1.62227 1.93292 1.47441 1.80881 1.81351 1.30967 1.45179 1.16766 1.24084 0.86692 1.26016 0.90530 1.03360 0.94378 1.69993 1.30444 1.31015 1.21137 0.85130 0.79343 0.76245 0.78637 1.17171 1.18280 1.18120 1.21476 0.79267 0.98542 1.01085 0.91049 0.92761 0.91755 0.90619 0.96063 0.83785 0.90506 0.90702 0.87868 0.92599 0.89958 0.90942 0.89066 0.91374 0.89703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 10.17 71.98 0.73 -1.55 16 2 C 0.05 1.02 6.20 86.30 0.54 1.55 16 3 N -0.68 -16.07 6.31 -491.18 -3.10 -19.17 16 4 C 0.08 2.15 2.64 44.99 0.12 2.27 16 5 H 0.03 1.11 7.80 -2.39 -0.02 1.09 16 6 C -0.09 -2.22 5.39 30.62 0.17 -2.06 16 7 C -0.13 -3.39 6.08 30.67 0.19 -3.20 16 8 C 0.11 3.82 6.38 86.36 0.55 4.37 16 9 N -1.01 -41.24 3.29 -513.07 -1.69 -42.92 16 10 S 2.72 149.35 4.97 -56.49 -0.28 149.07 16 11 O -1.04 -63.14 16.73 -128.00 -2.14 -65.28 16 12 O -1.04 -62.98 16.73 -128.00 -2.14 -65.13 16 13 C -1.04 -57.78 9.75 67.73 0.66 -57.12 16 14 H 0.11 5.85 7.81 -2.91 -0.02 5.83 16 15 C 0.07 3.92 5.46 84.65 0.46 4.39 16 16 N -0.89 -53.92 13.19 21.45 0.28 -53.64 16 17 Si 0.99 41.58 29.54 68.60 2.03 43.60 16 18 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 19 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 20 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 21 C 0.12 4.23 5.64 86.36 0.49 4.72 16 22 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 25 H 0.08 1.46 7.42 -2.39 -0.02 1.44 16 26 H 0.02 0.47 8.06 -2.39 -0.02 0.45 16 27 H 0.34 7.88 8.37 -89.69 -0.75 7.13 16 28 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.07 1.56 7.43 -2.39 -0.02 1.55 16 30 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 33 H 0.07 2.69 7.13 -2.39 -0.02 2.67 16 34 H 0.30 16.11 8.31 -92.71 -0.77 15.34 16 35 H 0.07 2.60 7.13 -2.39 -0.02 2.58 16 36 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -74.27 304.39 -2.83 -77.10 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: 0.31 Total: 22.99 kcal Atomic # 6 Polarization: -50.52 SS G_CDS: 3.90 Total: -46.62 kcal Atomic # 7 Polarization: -111.23 SS G_CDS: -4.50 Total: -115.74 kcal Atomic # 8 Polarization: -126.12 SS G_CDS: -4.28 Total: -130.40 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.60 kcal Atomic # 16 Polarization: 149.35 SS G_CDS: -0.28 Total: 149.07 kcal Total: -74.27 -2.83 -77.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721928125.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.259 kcal (2) G-P(sol) polarization free energy of solvation -74.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds