Wall clock time and date at job start Mon Mar 30 2020 05:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47368 * 2 1 4 4 C 1.53008 * 109.47082 * 240.00755 * 2 1 3 5 5 N 1.46897 * 109.47070 * 184.99782 * 4 2 1 6 6 C 1.46898 * 110.99815 * 179.97438 * 5 4 2 7 7 C 1.52998 * 117.50044 * 223.61903 * 6 5 4 8 8 C 1.53001 * 60.00512 * 252.51538 * 7 6 5 9 9 N 1.46502 * 109.47349 * 120.00625 * 2 1 3 10 10 C 1.46499 * 120.00062 * 60.00143 * 9 2 1 11 11 S 1.65606 * 119.99935 * 239.99645 * 9 2 1 12 12 O 1.42098 * 106.40010 * 23.54321 * 11 9 2 13 13 O 1.42094 * 106.39890 * 156.45686 * 11 9 2 14 14 C 1.76194 * 107.22007 * 270.00200 * 11 9 2 15 15 H 1.08001 * 120.00253 * 359.97438 * 14 11 9 16 16 C 1.37882 * 119.99779 * 180.02562 * 14 11 9 17 17 N 1.31510 * 120.00017 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 119.99681 * 179.97438 * 16 14 11 19 19 H 1.48503 * 109.47349 * 90.00025 * 18 16 14 20 20 H 1.48495 * 109.46998 * 209.99510 * 18 16 14 21 21 H 1.48499 * 109.47345 * 329.99975 * 18 16 14 22 22 H 1.08998 * 109.47159 * 59.99687 * 1 2 3 23 23 H 1.09003 * 109.46919 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47154 * 299.98961 * 1 2 3 25 25 H 1.09003 * 109.46861 * 304.99659 * 4 2 1 26 26 H 1.08996 * 109.47113 * 65.00108 * 4 2 1 27 27 H 1.00903 * 111.00130 * 56.04841 * 5 4 2 28 28 H 1.08992 * 115.55409 * 9.33448 * 6 5 4 29 29 H 1.09001 * 117.50198 * 0.02562 * 7 6 5 30 30 H 1.08997 * 117.49972 * 145.02155 * 7 6 5 31 31 H 1.08993 * 117.49900 * 252.51346 * 8 7 6 32 32 H 1.08999 * 117.51659 * 107.47997 * 8 7 6 33 33 H 1.09002 * 109.47391 * 89.99876 * 10 9 2 34 34 H 1.09001 * 109.46813 * 329.99933 * 10 9 2 35 35 H 1.09004 * 109.47041 * 210.00060 * 10 9 2 36 36 H 0.97000 * 120.00096 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 -1.2494 5 7 3.5040 -0.8265 -1.1906 6 6 4.0302 -1.5156 -2.3764 7 6 5.1201 -2.5667 -2.1572 8 6 5.4744 -1.2169 -2.7843 9 7 2.0183 -0.6907 1.1961 10 6 1.6645 -2.0933 1.4278 11 16 2.9705 0.1140 2.2862 12 8 2.6904 1.4970 2.1194 13 8 2.8229 -0.5649 3.5257 14 6 4.6445 -0.1183 1.7879 15 1 4.8700 -0.7039 0.9089 16 6 5.6667 0.4466 2.5208 17 7 5.3921 1.1592 3.5915 18 14 7.4414 0.1997 1.9929 19 1 7.8382 1.2894 1.0653 20 1 8.3214 0.2230 3.1889 21 1 7.5757 -1.1094 1.3049 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 1.6054 -1.7197 -1.2954 26 1 1.7516 -0.1581 -2.1370 27 1 3.7996 -1.2883 -0.3436 28 1 3.3093 -1.6964 -3.1737 29 1 5.4464 -2.7473 -1.1330 30 1 5.1162 -3.4395 -2.8101 31 1 5.7035 -1.2016 -3.8497 32 1 6.0338 -0.5089 -2.1728 33 1 2.4158 -2.7378 0.9713 34 1 0.6905 -2.3003 0.9844 35 1 1.6239 -2.2855 2.5000 36 1 6.1112 1.5570 4.1069 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721937710.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:31 Heat of formation + Delta-G solvation = -87.727145 kcal Electronic energy + Delta-G solvation = -19311.538854 eV Core-core repulsion = 16342.983516 eV Total energy + Delta-G solvation = -2968.555338 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.32978 -37.72880 -37.40039 -36.09466 -35.13366 -33.62764 -31.46986 -28.20776 -27.19131 -25.85392 -23.19249 -22.08327 -21.69473 -20.56658 -19.13948 -18.33435 -17.15904 -17.04412 -16.64061 -16.39826 -15.92857 -15.37367 -14.96953 -14.74689 -14.20855 -13.94514 -13.68618 -13.48477 -13.33375 -13.11186 -13.01148 -12.83579 -12.49632 -12.44239 -12.39865 -12.33639 -12.26836 -12.05619 -11.79433 -11.46258 -11.21794 -11.16731 -10.85857 -9.76343 -9.00010 -8.69087 -7.38341 0.36275 1.32318 1.34091 1.48014 2.21717 2.63190 2.82651 2.98339 3.24443 3.83905 4.01797 4.09151 4.11265 4.15583 4.26766 4.34718 4.39535 4.60590 4.73344 4.75334 4.80411 4.82319 4.85957 4.93791 4.95285 5.03586 5.11243 5.31290 5.33065 5.34625 5.50377 5.99334 6.07550 6.32439 6.47239 6.86871 8.25929 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.014580 B = 0.012054 C = 0.007495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.973164 B = 2322.332938 C = 3734.705405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.137 3.863 3 H 0.074 0.926 4 C 0.061 3.939 5 N -0.684 5.684 6 C 0.024 3.976 7 C -0.208 4.208 8 C -0.183 4.183 9 N -1.005 6.005 10 C 0.084 3.916 11 S 2.715 3.285 12 O -1.044 7.044 13 O -1.046 7.046 14 C -1.019 5.019 15 H 0.124 0.876 16 C 0.075 3.925 17 N -0.898 5.898 18 Si 0.982 3.018 19 H -0.260 1.260 20 H -0.266 1.266 21 H -0.247 1.247 22 H 0.091 0.909 23 H 0.080 0.920 24 H 0.043 0.957 25 H 0.056 0.944 26 H 0.099 0.901 27 H 0.343 0.657 28 H 0.133 0.867 29 H 0.075 0.925 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.102 0.898 35 H 0.061 0.939 36 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.666 -8.243 -13.648 16.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.031 3.969 3 H 0.092 0.908 4 C -0.069 4.069 5 N -0.317 5.317 6 C -0.087 4.087 7 C -0.247 4.247 8 C -0.221 4.221 9 N -0.844 5.844 10 C -0.061 4.061 11 S 2.817 3.183 12 O -1.034 7.034 13 O -1.036 7.036 14 C -1.153 5.153 15 H 0.142 0.858 16 C -0.138 4.138 17 N -0.531 5.531 18 Si 0.801 3.199 19 H -0.184 1.184 20 H -0.190 1.190 21 H -0.171 1.171 22 H 0.110 0.890 23 H 0.099 0.901 24 H 0.063 0.937 25 H 0.074 0.926 26 H 0.117 0.883 27 H 0.166 0.834 28 H 0.150 0.850 29 H 0.094 0.906 30 H 0.135 0.865 31 H 0.134 0.866 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.120 0.880 35 H 0.079 0.921 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.918 -7.037 -12.967 15.552 hybrid contribution 1.230 -0.770 0.297 1.481 sum -3.688 -7.808 -12.671 15.333 Atomic orbital electron populations 1.22071 0.92650 1.03575 1.02837 1.21084 0.95867 0.96167 0.83778 0.90827 1.22358 0.86824 1.00119 0.97606 1.60260 1.11108 1.55903 1.04469 1.22556 0.91857 0.98675 0.95585 1.23450 1.05225 0.93980 1.02012 1.23158 0.99034 0.98361 1.01588 1.57435 1.67337 1.22040 1.37559 1.21566 1.02377 0.80127 1.01992 1.00064 0.75282 0.71354 0.71555 1.93283 1.87271 1.36126 1.86695 1.93279 1.88738 1.76219 1.45354 1.30907 1.15595 1.45574 1.23233 0.85848 1.25870 1.06594 0.89538 0.91765 1.70002 1.37880 1.29277 1.15900 0.85246 0.75209 0.80465 0.78977 1.18427 1.19023 1.17059 0.89028 0.90117 0.93748 0.92612 0.88327 0.83378 0.84956 0.90598 0.86513 0.86616 0.90939 0.92662 0.87972 0.92066 0.89442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 9.17 71.98 0.66 -3.09 16 2 C 0.14 4.51 2.94 44.99 0.13 4.64 16 3 H 0.07 2.94 6.91 -2.39 -0.02 2.92 16 4 C 0.06 1.60 4.88 86.31 0.42 2.03 16 5 N -0.68 -21.84 6.73 -491.56 -3.31 -25.14 16 6 C 0.02 0.59 6.31 44.92 0.28 0.88 16 7 C -0.21 -5.02 10.23 30.59 0.31 -4.71 16 8 C -0.18 -4.67 10.46 30.60 0.32 -4.35 16 9 N -1.00 -39.32 2.14 -516.50 -1.11 -40.43 16 10 C 0.08 2.63 9.80 127.77 1.25 3.88 16 11 S 2.71 148.04 4.97 -56.49 -0.28 147.76 16 12 O -1.04 -63.81 16.58 -128.00 -2.12 -65.93 16 13 O -1.05 -63.21 16.62 -128.00 -2.13 -65.34 16 14 C -1.02 -56.01 9.48 67.74 0.64 -55.37 16 15 H 0.12 6.12 5.51 -2.91 -0.02 6.10 16 16 C 0.07 4.21 5.46 84.66 0.46 4.67 16 17 N -0.90 -54.73 13.19 21.45 0.28 -54.45 16 18 Si 0.98 42.65 29.54 68.60 2.03 44.68 16 19 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 20 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 21 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 22 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.08 1.58 6.66 -2.39 -0.02 1.56 16 24 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.06 1.19 7.84 -2.39 -0.02 1.17 16 26 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.34 12.34 5.03 -89.69 -0.45 11.89 16 28 H 0.13 2.55 7.90 -2.39 -0.02 2.53 16 29 H 0.08 2.15 8.09 -2.39 -0.02 2.13 16 30 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.05 1.55 8.13 -2.39 -0.02 1.53 16 34 H 0.10 2.31 6.43 -2.39 -0.02 2.29 16 35 H 0.06 2.14 7.02 -2.38 -0.02 2.12 16 36 H 0.30 16.29 8.31 -92.71 -0.77 15.52 16 Total: -1.00 -76.95 306.50 -1.52 -78.47 By element: Atomic # 1 Polarization: 31.19 SS G_CDS: 0.63 Total: 31.82 kcal Atomic # 6 Polarization: -55.91 SS G_CDS: 4.49 Total: -51.43 kcal Atomic # 7 Polarization: -115.89 SS G_CDS: -4.13 Total: -120.03 kcal Atomic # 8 Polarization: -127.02 SS G_CDS: -4.25 Total: -131.27 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Atomic # 16 Polarization: 148.04 SS G_CDS: -0.28 Total: 147.76 kcal Total: -76.95 -1.52 -78.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721937710.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.258 kcal (2) G-P(sol) polarization free energy of solvation -76.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds