Wall clock time and date at job start Mon Mar 30 2020 05:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.49334 * 2 1 4 4 C 1.53192 * 109.49845 * 120.06537 * 2 1 3 5 5 N 1.46931 * 108.77157 * 174.55535 * 4 2 1 6 6 S 1.65597 * 120.60631 * 126.42649 * 5 4 2 7 7 O 1.42102 * 106.40147 * 23.55889 * 6 5 4 8 8 O 1.42098 * 106.40499 * 156.48259 * 6 5 4 9 9 C 1.76208 * 107.21564 * 270.02270 * 6 5 4 10 10 H 1.07996 * 119.99979 * 0.02562 * 9 6 5 11 11 C 1.37871 * 119.99723 * 179.97438 * 9 6 5 12 12 N 1.31514 * 119.99831 * 179.97438 * 11 9 6 13 13 Si 1.86798 * 120.00273 * 359.97438 * 11 9 6 14 14 H 1.48500 * 109.47191 * 89.99848 * 13 11 9 15 15 H 1.48496 * 109.47389 * 210.00052 * 13 11 9 16 16 H 1.48499 * 109.47360 * 329.99799 * 13 11 9 17 17 C 1.46928 * 118.76330 * 306.44515 * 5 4 2 18 18 C 1.53191 * 108.77441 * 53.58938 * 17 5 4 19 19 H 1.09006 * 109.52107 * 185.39321 * 18 17 5 20 20 C 1.53001 * 109.49931 * 65.31708 * 18 17 5 21 21 C 1.53035 * 109.31251 * 305.36093 * 18 17 5 22 22 N 1.46909 * 109.46048 * 181.38556 * 21 18 17 23 23 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.46955 * 299.99857 * 1 2 3 25 25 H 1.09000 * 109.47050 * 59.99686 * 1 2 3 26 26 H 1.09001 * 109.58792 * 294.37814 * 4 2 1 27 27 H 1.09004 * 109.58104 * 54.80294 * 4 2 1 28 28 H 0.97009 * 120.00036 * 180.02562 * 12 11 9 29 29 H 1.08994 * 109.58970 * 293.80423 * 17 5 4 30 30 H 1.09004 * 109.69960 * 173.44327 * 17 5 4 31 31 H 1.09000 * 109.46820 * 300.16120 * 20 18 17 32 32 H 1.09003 * 109.47293 * 60.15524 * 20 18 17 33 33 H 1.09001 * 109.47498 * 180.16064 * 20 18 17 34 34 H 1.08998 * 109.45084 * 301.35365 * 21 18 17 35 35 H 1.00904 * 110.99750 * 59.93359 * 22 21 18 36 36 H 1.00895 * 110.99900 * 183.88687 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7235 1.2498 5 7 3.5047 -0.8294 1.1693 6 16 4.4588 -0.2854 2.4086 7 8 3.6472 -0.2978 3.5751 8 8 5.6875 -0.9921 2.3092 9 6 4.8291 1.4054 2.0782 10 1 4.4390 1.8800 1.1900 11 6 5.6160 2.1226 2.9541 12 7 5.8928 3.3844 2.7073 13 14 6.2890 1.3023 4.4915 14 1 7.6105 0.6955 4.1906 15 1 6.4426 2.3153 5.5663 16 1 5.3488 0.2438 4.9397 17 6 4.1053 -1.4266 -0.0312 18 6 3.5709 -0.6945 -1.2662 19 1 3.9335 -1.1884 -2.1678 20 6 4.0552 0.7567 -1.2490 21 6 2.0409 -0.7227 -1.2486 22 7 1.5251 -0.0502 -2.4486 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.7638 -0.1574 2.1389 27 1 1.6053 -1.7213 1.2984 28 1 6.4468 3.8889 3.3234 29 1 3.8376 -2.4816 -0.0876 30 1 5.1899 -1.3265 0.0120 31 1 3.6934 1.2498 -0.3468 32 1 5.1450 0.7763 -1.2615 33 1 3.6724 1.2780 -2.1264 34 1 1.6970 -1.7569 -1.2357 35 1 1.8485 -0.5089 -3.2872 36 1 0.5176 0.0005 -2.4298 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721938963.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:18 Heat of formation + Delta-G solvation = -84.760715 kcal Electronic energy + Delta-G solvation = -19688.298849 eV Core-core repulsion = 16719.872145 eV Total energy + Delta-G solvation = -2968.426704 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.21209 -35.69605 -34.42111 -34.23081 -33.02523 -32.86710 -30.18422 -26.72291 -26.34134 -25.73026 -23.05917 -21.40263 -19.06403 -18.15556 -17.45177 -16.71820 -15.93832 -15.32574 -15.22385 -14.75288 -14.33513 -13.77759 -13.67167 -13.30024 -13.19650 -12.81781 -12.63750 -12.18442 -11.93580 -11.72143 -11.41145 -11.27719 -11.15089 -10.96357 -10.76783 -10.60034 -10.57696 -10.36800 -10.13885 -9.80765 -9.75181 -9.16919 -9.02139 -8.54791 -8.19210 -6.75238 -5.27890 2.04794 3.09289 3.19888 3.29415 3.98474 4.18365 4.56822 4.63408 4.90117 4.96825 5.16398 5.36009 5.44512 5.51445 5.62262 5.68318 5.78161 5.81626 5.87060 6.00976 6.08643 6.13754 6.20276 6.26724 6.34199 6.50851 6.57273 6.65030 6.81644 7.03004 7.25556 7.41154 7.50915 7.53962 8.32153 8.76737 10.36597 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.029101 B = 0.008213 C = 0.007939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.923582 B = 3408.599768 C = 3526.267367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.106 4.106 3 H 0.093 0.907 4 C 0.133 3.867 5 N -0.999 5.999 6 S 2.673 3.327 7 O -1.009 7.009 8 O -1.010 7.010 9 C -1.013 5.013 10 H 0.128 0.872 11 C 0.155 3.845 12 N -0.823 5.823 13 Si 0.798 3.202 14 H -0.248 1.248 15 H -0.256 1.256 16 H -0.221 1.221 17 C 0.130 3.870 18 C -0.097 4.097 19 H 0.069 0.931 20 C -0.145 4.145 21 C 0.107 3.893 22 N -0.843 5.843 23 H 0.049 0.951 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.093 0.907 27 H 0.057 0.943 28 H 0.279 0.721 29 H 0.056 0.944 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.030 0.970 35 H 0.336 0.664 36 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.376 -7.137 -8.304 13.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.126 4.126 3 H 0.112 0.888 4 C 0.006 3.994 5 N -0.834 5.834 6 S 2.776 3.224 7 O -0.999 6.999 8 O -1.001 7.001 9 C -1.148 5.148 10 H 0.146 0.854 11 C -0.065 4.065 12 N -0.452 5.452 13 Si 0.618 3.382 14 H -0.171 1.171 15 H -0.180 1.180 16 H -0.143 1.143 17 C 0.004 3.996 18 C -0.117 4.117 19 H 0.088 0.912 20 C -0.202 4.202 21 C -0.004 4.004 22 N -0.374 5.374 23 H 0.068 0.932 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.111 0.889 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.112 0.888 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.048 0.952 35 H 0.148 0.852 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.619 -6.894 -7.263 12.583 hybrid contribution -0.127 -0.447 0.010 0.465 sum -7.746 -7.341 -7.253 12.904 Atomic orbital electron populations 1.21809 0.95355 1.01265 1.02156 1.21632 0.95010 1.01896 0.94111 0.88843 1.21304 0.79914 0.99914 0.98245 1.57650 1.15052 1.76838 1.33818 1.01487 0.72335 0.76977 0.71570 1.93449 1.70107 1.89440 1.46885 1.93392 1.44421 1.76086 1.86173 1.30624 1.44798 1.19138 1.20231 0.85377 1.24405 0.91568 0.94131 0.96346 1.69997 1.31442 1.07672 1.36084 0.87931 0.83663 0.82738 0.83894 1.17137 1.17985 1.14293 1.21312 0.98817 0.95609 0.83887 1.21481 0.94187 0.98461 0.97570 0.91243 1.21884 1.00431 0.94712 1.03215 1.21241 0.94767 0.94382 0.90050 1.58729 1.14906 1.59804 1.03970 0.93189 0.92095 0.92292 0.88864 0.92486 0.91030 0.92553 0.88807 0.90843 0.93076 0.92219 0.95202 0.85197 0.84904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.84 37.16 0.33 -1.34 16 2 C -0.11 -1.53 2.25 -90.50 -0.20 -1.73 16 3 H 0.09 1.57 6.34 -51.93 -0.33 1.24 16 4 C 0.13 2.22 5.66 -3.71 -0.02 2.20 16 5 N -1.00 -19.53 2.73 -113.51 -0.31 -19.84 16 6 S 2.67 67.22 4.19 -107.50 -0.45 66.77 16 7 O -1.01 -27.11 14.73 -57.17 -0.84 -27.95 16 8 O -1.01 -27.09 15.55 -57.17 -0.89 -27.97 16 9 C -1.01 -27.94 10.23 30.60 0.31 -27.63 16 10 H 0.13 3.53 5.91 -52.49 -0.31 3.22 16 11 C 0.15 4.43 5.47 -17.82 -0.10 4.34 16 12 N -0.82 -23.70 13.96 55.43 0.77 -22.92 16 13 Si 0.80 20.71 26.54 -169.99 -4.51 16.20 16 14 H -0.25 -6.30 7.11 56.52 0.40 -5.90 16 15 H -0.26 -6.11 7.11 56.52 0.40 -5.71 16 16 H -0.22 -5.86 5.60 56.52 0.32 -5.54 16 17 C 0.13 2.19 5.77 -3.71 -0.02 2.17 16 18 C -0.10 -1.40 2.88 -90.50 -0.26 -1.67 16 19 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 20 C -0.15 -2.47 8.56 37.16 0.32 -2.16 16 21 C 0.11 1.37 2.43 -67.67 -0.16 1.21 16 22 N -0.84 -9.22 8.51 -4.63 -0.04 -9.25 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.59 6.56 -51.93 -0.34 0.25 16 26 H 0.09 1.67 7.13 -51.93 -0.37 1.30 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.28 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.09 1.69 7.13 -51.93 -0.37 1.32 16 31 H 0.07 1.44 3.76 -51.93 -0.20 1.24 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.06 0.94 7.65 -51.93 -0.40 0.55 16 34 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.34 3.11 9.04 -39.29 -0.36 2.76 16 36 H 0.34 3.17 6.99 -39.29 -0.27 2.89 16 LS Contribution 283.91 15.07 4.28 4.28 Total: -1.00 -31.77 283.91 -6.92 -38.70 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -5.12 Total: 6.62 kcal Atomic # 6 Polarization: -24.80 SS G_CDS: 0.19 Total: -24.61 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: 0.42 Total: -52.02 kcal Atomic # 8 Polarization: -54.20 SS G_CDS: -1.73 Total: -55.93 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.51 Total: 16.20 kcal Atomic # 16 Polarization: 67.22 SS G_CDS: -0.45 Total: 66.77 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.77 -6.92 -38.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721938963.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.066 kcal (2) G-P(sol) polarization free energy of solvation -31.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds