Wall clock time and date at job start Mon Mar 30 2020 05:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.49334 * 2 1 4 4 C 1.53192 * 109.49845 * 120.06537 * 2 1 3 5 5 N 1.46931 * 108.77157 * 174.55535 * 4 2 1 6 6 S 1.65597 * 120.60631 * 126.42649 * 5 4 2 7 7 O 1.42102 * 106.40147 * 23.55889 * 6 5 4 8 8 O 1.42098 * 106.40499 * 156.48259 * 6 5 4 9 9 C 1.76208 * 107.21564 * 270.02270 * 6 5 4 10 10 H 1.07996 * 119.99979 * 0.02562 * 9 6 5 11 11 C 1.37871 * 119.99723 * 179.97438 * 9 6 5 12 12 N 1.31514 * 119.99831 * 179.97438 * 11 9 6 13 13 Si 1.86798 * 120.00273 * 359.97438 * 11 9 6 14 14 H 1.48500 * 109.47191 * 89.99848 * 13 11 9 15 15 H 1.48496 * 109.47389 * 210.00052 * 13 11 9 16 16 H 1.48499 * 109.47360 * 329.99799 * 13 11 9 17 17 C 1.46928 * 118.76330 * 306.44515 * 5 4 2 18 18 C 1.53191 * 108.77441 * 53.58938 * 17 5 4 19 19 H 1.09006 * 109.52107 * 185.39321 * 18 17 5 20 20 C 1.53001 * 109.49931 * 65.31708 * 18 17 5 21 21 C 1.53035 * 109.31251 * 305.36093 * 18 17 5 22 22 N 1.46909 * 109.46048 * 181.38556 * 21 18 17 23 23 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.46955 * 299.99857 * 1 2 3 25 25 H 1.09000 * 109.47050 * 59.99686 * 1 2 3 26 26 H 1.09001 * 109.58792 * 294.37814 * 4 2 1 27 27 H 1.09004 * 109.58104 * 54.80294 * 4 2 1 28 28 H 0.97009 * 120.00036 * 180.02562 * 12 11 9 29 29 H 1.08994 * 109.58970 * 293.80423 * 17 5 4 30 30 H 1.09004 * 109.69960 * 173.44327 * 17 5 4 31 31 H 1.09000 * 109.46820 * 300.16120 * 20 18 17 32 32 H 1.09003 * 109.47293 * 60.15524 * 20 18 17 33 33 H 1.09001 * 109.47498 * 180.16064 * 20 18 17 34 34 H 1.08998 * 109.45084 * 301.35365 * 21 18 17 35 35 H 1.00904 * 110.99750 * 59.93359 * 22 21 18 36 36 H 1.00895 * 110.99900 * 183.88687 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7235 1.2498 5 7 3.5047 -0.8294 1.1693 6 16 4.4588 -0.2854 2.4086 7 8 3.6472 -0.2978 3.5751 8 8 5.6875 -0.9921 2.3092 9 6 4.8291 1.4054 2.0782 10 1 4.4390 1.8800 1.1900 11 6 5.6160 2.1226 2.9541 12 7 5.8928 3.3844 2.7073 13 14 6.2890 1.3023 4.4915 14 1 7.6105 0.6955 4.1906 15 1 6.4426 2.3153 5.5663 16 1 5.3488 0.2438 4.9397 17 6 4.1053 -1.4266 -0.0312 18 6 3.5709 -0.6945 -1.2662 19 1 3.9335 -1.1884 -2.1678 20 6 4.0552 0.7567 -1.2490 21 6 2.0409 -0.7227 -1.2486 22 7 1.5251 -0.0502 -2.4486 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.7638 -0.1574 2.1389 27 1 1.6053 -1.7213 1.2984 28 1 6.4468 3.8889 3.3234 29 1 3.8376 -2.4816 -0.0876 30 1 5.1899 -1.3265 0.0120 31 1 3.6934 1.2498 -0.3468 32 1 5.1450 0.7763 -1.2615 33 1 3.6724 1.2780 -2.1264 34 1 1.6970 -1.7569 -1.2357 35 1 1.8485 -0.5089 -3.2872 36 1 0.5176 0.0005 -2.4298 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721938963.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:18 Heat of formation + Delta-G solvation = -110.722463 kcal Electronic energy + Delta-G solvation = -19689.424635 eV Core-core repulsion = 16719.872145 eV Total energy + Delta-G solvation = -2969.552490 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.41699 -37.75421 -36.48991 -35.51149 -35.13022 -34.10037 -31.31850 -28.56951 -27.85683 -26.97590 -24.33785 -22.58493 -20.87032 -19.68921 -19.18479 -18.63856 -17.22681 -17.08999 -16.56506 -16.08269 -15.69743 -15.51120 -15.34147 -14.96038 -14.80711 -14.36198 -13.74361 -13.66190 -13.45975 -13.21519 -13.06178 -13.00633 -12.65108 -12.58530 -12.49492 -12.27957 -12.19270 -11.89879 -11.67343 -11.38320 -11.32402 -11.08786 -10.90334 -9.72370 -9.39565 -8.93038 -7.46470 0.12915 1.02947 1.12043 1.19616 1.88619 2.43729 2.46448 3.39268 3.62039 3.73106 3.78115 3.99142 4.23448 4.25776 4.30772 4.38543 4.59594 4.67849 4.75179 4.76844 4.82050 4.88816 5.03015 5.12450 5.13535 5.25723 5.31280 5.41542 5.44623 5.56358 5.65895 5.91868 6.15842 6.42028 6.59003 6.79914 8.24010 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.029101 B = 0.008213 C = 0.007939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.923582 B = 3408.599768 C = 3526.267367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.105 4.105 3 H 0.060 0.940 4 C 0.123 3.877 5 N -0.994 5.994 6 S 2.689 3.311 7 O -1.029 7.029 8 O -1.030 7.030 9 C -1.031 5.031 10 H 0.115 0.885 11 C 0.111 3.889 12 N -0.853 5.853 13 Si 0.819 3.181 14 H -0.242 1.242 15 H -0.221 1.221 16 H -0.231 1.231 17 C 0.119 3.881 18 C -0.092 4.092 19 H 0.101 0.899 20 C -0.143 4.143 21 C 0.115 3.885 22 N -0.849 5.849 23 H 0.071 0.929 24 H 0.054 0.946 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.289 0.711 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.041 0.959 32 H 0.032 0.968 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.349 0.651 36 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.732 -8.847 -9.481 16.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.126 4.126 3 H 0.079 0.921 4 C -0.002 4.002 5 N -0.833 5.833 6 S 2.791 3.209 7 O -1.020 7.020 8 O -1.020 7.020 9 C -1.164 5.164 10 H 0.133 0.867 11 C -0.105 4.105 12 N -0.484 5.484 13 Si 0.636 3.364 14 H -0.165 1.165 15 H -0.143 1.143 16 H -0.154 1.154 17 C -0.006 4.006 18 C -0.112 4.112 19 H 0.119 0.881 20 C -0.200 4.200 21 C 0.003 3.997 22 N -0.382 5.382 23 H 0.090 0.910 24 H 0.073 0.927 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.108 0.892 28 H 0.099 0.901 29 H 0.110 0.890 30 H 0.093 0.907 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.163 0.837 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -8.970 -8.572 -8.442 15.007 hybrid contribution 0.241 0.087 0.271 0.373 sum -8.729 -8.485 -8.171 14.662 Atomic orbital electron populations 1.21776 0.92713 1.02836 1.02685 1.21573 0.97150 0.99889 0.93956 0.92134 1.21617 0.78021 1.01777 0.98828 1.57280 1.15967 1.76391 1.33621 1.00758 0.72241 0.75688 0.72206 1.93410 1.70412 1.89390 1.48748 1.93354 1.46045 1.75767 1.86871 1.31131 1.44338 1.21244 1.19688 0.86689 1.25102 0.92101 0.94769 0.98533 1.70024 1.32466 1.08473 1.37407 0.87589 0.83134 0.82894 0.82742 1.16516 1.14298 1.15398 1.21636 0.97890 0.97669 0.83415 1.21480 0.95800 0.96281 0.97643 0.88126 1.21824 0.99227 0.96860 1.02067 1.21087 0.93157 0.95447 0.89965 1.58604 1.15908 1.59939 1.03770 0.91021 0.92680 0.90791 0.90918 0.89236 0.90054 0.89020 0.90728 0.93956 0.94849 0.91196 0.92833 0.83704 0.83576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 8.84 71.98 0.64 -2.17 16 2 C -0.11 -2.84 2.25 -10.71 -0.02 -2.87 16 3 H 0.06 2.05 6.34 -2.39 -0.02 2.03 16 4 C 0.12 3.94 5.66 86.36 0.49 4.43 16 5 N -0.99 -38.23 2.73 -513.05 -1.40 -39.63 16 6 S 2.69 136.83 4.19 -56.49 -0.24 136.60 16 7 O -1.03 -55.90 14.73 -128.00 -1.89 -57.78 16 8 O -1.03 -55.63 15.55 -128.00 -1.99 -57.62 16 9 C -1.03 -58.73 10.23 67.73 0.69 -58.04 16 10 H 0.12 6.68 5.91 -2.91 -0.02 6.67 16 11 C 0.11 6.51 5.47 84.65 0.46 6.97 16 12 N -0.85 -50.16 13.96 21.44 0.30 -49.86 16 13 Si 0.82 42.02 26.54 68.60 1.82 43.84 16 14 H -0.24 -12.07 7.11 99.48 0.71 -11.37 16 15 H -0.22 -10.01 7.11 99.48 0.71 -9.30 16 16 H -0.23 -12.24 5.60 99.48 0.56 -11.68 16 17 C 0.12 3.79 5.77 86.36 0.50 4.29 16 18 C -0.09 -2.46 2.88 -10.72 -0.03 -2.49 16 19 H 0.10 2.13 8.14 -2.38 -0.02 2.11 16 20 C -0.14 -4.85 8.56 71.98 0.62 -4.24 16 21 C 0.11 2.56 2.43 44.94 0.11 2.67 16 22 N -0.85 -15.57 8.51 -168.56 -1.44 -17.00 16 23 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.07 1.25 6.56 -2.39 -0.02 1.23 16 26 H 0.07 2.61 7.13 -2.39 -0.02 2.59 16 27 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 28 H 0.29 15.37 8.31 -92.70 -0.77 14.60 16 29 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.07 2.66 7.13 -2.38 -0.02 2.64 16 31 H 0.04 1.71 3.76 -2.39 -0.01 1.70 16 32 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.07 2.17 7.65 -2.39 -0.02 2.16 16 34 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.35 5.04 9.04 -89.69 -0.81 4.23 16 36 H 0.35 5.19 6.99 -89.70 -0.63 4.56 16 Total: -1.00 -69.92 283.91 -1.86 -71.78 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: -0.48 Total: 21.13 kcal Atomic # 6 Polarization: -54.89 SS G_CDS: 3.45 Total: -51.44 kcal Atomic # 7 Polarization: -103.96 SS G_CDS: -2.53 Total: -106.50 kcal Atomic # 8 Polarization: -111.53 SS G_CDS: -3.88 Total: -115.41 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 1.82 Total: 43.84 kcal Atomic # 16 Polarization: 136.83 SS G_CDS: -0.24 Total: 136.60 kcal Total: -69.92 -1.86 -71.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721938963.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.946 kcal (2) G-P(sol) polarization free energy of solvation -69.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds