Wall clock time and date at job start Mon Mar 30 2020 05:43:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46895 * 1
3 3 C 1.46899 * 110.99900 * 2 1
4 4 C 1.53009 * 109.47071 * 180.02562 * 3 2 1
5 5 S 1.81397 * 109.47235 * 179.97438 * 4 3 2
6 6 O 1.42105 * 110.54275 * 68.37271 * 5 4 3
7 7 O 1.42101 * 110.54298 * 291.62373 * 5 4 3
8 8 N 1.65599 * 104.44825 * 179.97438 * 5 4 3
9 9 C 1.46496 * 120.00159 * 269.99969 * 8 5 4
10 10 C 1.50700 * 109.47090 * 95.00067 * 9 8 5
11 11 H 1.07993 * 120.00080 * 359.97438 * 10 9 8
12 12 C 1.37876 * 119.99752 * 179.97438 * 10 9 8
13 13 N 1.31514 * 120.00353 * 0.02562 * 12 10 9
14 14 Si 1.86799 * 119.99865 * 179.97438 * 12 10 9
15 15 H 1.48506 * 109.46901 * 60.00404 * 14 12 10
16 16 H 1.48494 * 109.47286 * 180.02562 * 14 12 10
17 17 H 1.48499 * 109.47408 * 300.00378 * 14 12 10
18 18 C 1.46501 * 119.99889 * 90.00206 * 8 5 4
19 19 C 1.52990 * 117.49804 * 188.61821 * 18 8 5
20 20 C 1.52994 * 60.00276 * 252.50961 * 19 18 8
21 21 H 1.09000 * 109.47197 * 300.00315 * 1 2 3
22 22 H 1.09008 * 109.47162 * 60.00481 * 1 2 3
23 23 H 1.08999 * 109.47527 * 179.97438 * 1 2 3
24 24 H 1.00901 * 110.99904 * 236.04756 * 2 1 3
25 25 H 1.08995 * 109.47158 * 59.99908 * 3 2 1
26 26 H 1.09000 * 109.47157 * 299.99616 * 3 2 1
27 27 H 1.09004 * 109.47149 * 59.99965 * 4 3 2
28 28 H 1.09000 * 109.46805 * 299.99817 * 4 3 2
29 29 H 1.09001 * 109.47302 * 215.00738 * 9 8 5
30 30 H 1.09002 * 109.47116 * 334.99986 * 9 8 5
31 31 H 0.97001 * 120.00410 * 179.97438 * 13 12 10
32 32 H 1.09003 * 115.55067 * 334.33121 * 18 8 5
33 33 H 1.09004 * 117.50466 * 0.02562 * 19 18 8
34 34 H 1.09010 * 117.49989 * 145.01881 * 19 18 8
35 35 H 1.08999 * 117.50183 * 252.51144 * 20 19 18
36 36 H 1.09004 * 117.51923 * 107.47806 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4689 0.0000 0.0000
3 6 1.9954 1.3714 0.0000
4 6 3.5249 1.3306 -0.0006
5 16 4.1750 3.0241 -0.0014
6 8 3.8964 3.6658 1.2355
7 8 3.8954 3.6650 -1.2385
8 7 5.8202 2.8351 -0.0013
9 6 6.5479 2.7521 1.2674
10 6 6.7425 1.3052 1.6411
11 1 6.3618 0.5255 0.9982
12 6 7.4066 0.9769 2.8039
13 7 7.8698 1.9264 3.5872
14 14 7.6472 -0.8165 3.2676
15 1 8.4247 -1.5026 2.2045
16 1 8.3850 -0.9007 4.5535
17 1 6.3228 -1.4721 3.4135
18 6 6.5479 2.7510 -1.2701
19 6 8.0299 2.3761 -1.2108
20 6 7.6166 3.8112 -1.5431
21 1 -0.3633 0.5139 0.8899
22 1 -0.3634 0.5138 -0.8901
23 1 -0.3634 -1.0276 -0.0005
24 1 1.8305 -0.5261 -0.7814
25 1 1.6459 1.8948 0.8899
26 1 1.6459 1.8948 -0.8900
27 1 3.8741 0.8074 -0.8909
28 1 3.8747 0.8072 0.8891
29 1 7.5199 3.2339 1.1609
30 1 5.9767 3.2553 2.0475
31 1 8.3367 1.6955 4.4055
32 1 5.9702 2.3882 -2.1202
33 1 8.4636 2.1916 -0.2280
34 1 8.4277 1.7662 -2.0221
35 1 7.7424 4.1456 -2.5729
36 1 7.7781 4.5716 -0.7789
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000722228445.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:43:26
Heat of formation + Delta-G solvation = -41.596043 kcal
Electronic energy + Delta-G solvation = -18728.972912 eV
Core-core repulsion = 15762.417969 eV
Total energy + Delta-G solvation = -2966.554944 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 262.114 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-37.51695 -36.55755 -36.50702 -35.36277 -33.36054 -31.74749 -30.93338 -27.05972
-25.12582 -23.11286 -22.43695 -21.77234 -20.60911 -18.14108 -17.30013 -16.54713
-16.26825 -15.95301 -15.66866 -14.79213 -14.50040 -14.26451 -14.03692 -13.85978
-13.23344 -12.60280 -12.27041 -11.96166 -11.91512 -11.82353 -11.53828 -11.47343
-11.37448 -11.16712 -11.11123 -10.86401 -10.75093 -10.45629 -10.27670 -10.13486
-9.71241 -9.51948 -8.60485 -8.50636 -7.84126 -6.12206 -4.19868 0.83746
3.24452 3.27190 3.32535 3.35306 4.09124 4.34326 4.37662 4.55558
4.65113 4.82419 5.01568 5.20957 5.24641 5.31139 5.37575 5.41149
5.48645 5.56481 5.68674 5.74160 5.76783 6.11536 6.17937 6.47626
6.70822 6.81040 6.91714 7.20619 7.32051 7.40869 7.63672 7.83746
8.12033 8.84741 9.46690 10.95259
Molecular weight = 262.11amu
Principal moments of inertia in cm(-1)
A = 0.014674 B = 0.008731 C = 0.006380
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1907.688783 B = 3206.343975 C = 4387.729003
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.023 3.977
2 N -0.685 5.685
3 C 0.071 3.929
4 C -0.635 4.635
5 S 2.618 3.382
6 O -0.952 6.952
7 O -0.976 6.976
8 N -0.957 5.957
9 C 0.240 3.760
10 C -0.543 4.543
11 H 0.062 0.938
12 C 0.066 3.934
13 N -0.888 5.888
14 Si 0.893 3.107
15 H -0.276 1.276
16 H -0.287 1.287
17 H -0.275 1.275
18 C 0.095 3.905
19 C -0.173 4.173
20 C -0.199 4.199
21 H 0.067 0.933
22 H 0.022 0.978
23 H 0.069 0.931
24 H 0.344 0.656
25 H 0.086 0.914
26 H 0.040 0.960
27 H 0.123 0.877
28 H 0.152 0.848
29 H 0.042 0.958
30 H 0.056 0.944
31 H 0.266 0.734
32 H 0.117 0.883
33 H 0.120 0.880
34 H 0.088 0.912
35 H 0.090 0.910
36 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.460 -2.233 -9.426 12.226
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 N -0.317 5.317
3 C -0.060 4.060
4 C -0.763 4.763
5 S 2.710 3.290
6 O -0.942 6.942
7 O -0.966 6.966
8 N -0.793 5.793
9 C 0.118 3.882
10 C -0.582 4.582
11 H 0.081 0.919
12 C -0.137 4.137
13 N -0.526 5.526
14 Si 0.721 3.279
15 H -0.202 1.202
16 H -0.212 1.212
17 H -0.200 1.200
18 C -0.013 4.013
19 C -0.212 4.212
20 C -0.239 4.239
21 H 0.086 0.914
22 H 0.041 0.959
23 H 0.088 0.912
24 H 0.161 0.839
25 H 0.104 0.896
26 H 0.059 0.941
27 H 0.142 0.858
28 H 0.170 0.830
29 H 0.060 0.940
30 H 0.074 0.926
31 H 0.075 0.925
32 H 0.134 0.866
33 H 0.138 0.862
34 H 0.106 0.894
35 H 0.108 0.892
36 H 0.113 0.887
Dipole moment (debyes) X Y Z Total
from point charges -7.802 -1.450 -8.520 11.643
hybrid contribution 0.236 -1.616 -0.553 1.724
sum -7.567 -3.066 -9.073 12.206
Atomic orbital electron populations
1.22254 0.87665 1.02053 1.00662 1.60372 1.07668 1.13383 1.50245
1.21626 0.91425 0.91361 1.01566 1.30879 1.04459 1.28289 1.12650
1.04623 0.73681 0.76940 0.73771 1.93577 1.83835 1.71975 1.44832
1.93525 1.84615 1.72562 1.45879 1.57028 1.23091 1.87269 1.11872
1.19281 0.93444 0.97425 0.78007 1.21513 1.37822 0.92244 1.06664
0.91931 1.24941 0.95286 0.97481 0.96028 1.69922 1.37251 1.32230
1.13190 0.86638 0.78498 0.85007 0.77795 1.20178 1.21210 1.20007
1.21041 0.89761 1.03703 0.86824 1.23332 0.96760 0.96738 1.04331
1.23323 1.05280 0.93511 1.01774 0.91374 0.95922 0.91203 0.83860
0.89563 0.94149 0.85833 0.82992 0.94016 0.92638 0.92471 0.86557
0.86162 0.89351 0.89164 0.88742
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.24 10.70 60.06 0.64 0.88 16
2 N -0.69 -8.70 6.86 -121.13 -0.83 -9.53 16
3 C 0.07 0.99 5.69 -3.82 -0.02 0.97 16
4 C -0.63 -9.87 6.44 37.16 0.24 -9.63 16
5 S 2.62 49.53 5.43 -107.50 -0.58 48.94 16
6 O -0.95 -21.43 16.53 -57.54 -0.95 -22.38 16
7 O -0.98 -19.13 17.15 -57.54 -0.99 -20.12 16
8 N -0.96 -19.40 3.04 -108.58 -0.33 -19.73 16
9 C 0.24 5.83 4.70 -5.20 -0.02 5.81 16
10 C -0.54 -13.82 8.74 -34.44 -0.30 -14.12 16
11 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16
12 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16
13 N -0.89 -25.04 13.29 55.43 0.74 -24.30 16
14 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16
15 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16
16 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16
17 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16
18 C 0.09 1.67 6.01 -67.94 -0.41 1.26 16
19 C -0.17 -2.92 9.63 -26.74 -0.26 -3.18 16
20 C -0.20 -3.25 10.12 -26.73 -0.27 -3.52 16
21 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16
22 H 0.02 0.20 8.14 -51.92 -0.42 -0.22 16
23 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
24 H 0.34 3.78 8.81 -39.29 -0.35 3.43 16
25 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16
26 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16
27 H 0.12 1.63 8.14 -51.92 -0.42 1.20 16
28 H 0.15 2.61 8.14 -51.92 -0.42 2.19 16
29 H 0.04 1.06 6.56 -51.93 -0.34 0.71 16
30 H 0.06 1.50 6.81 -51.93 -0.35 1.14 16
31 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16
32 H 0.12 1.75 7.97 -51.93 -0.41 1.34 16
33 H 0.12 2.41 6.15 -51.93 -0.32 2.09 16
34 H 0.09 1.25 8.14 -51.92 -0.42 0.83 16
35 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16
36 H 0.09 1.65 8.06 -51.93 -0.42 1.23 16
LS Contribution 314.39 15.07 4.74 4.74
Total: -1.00 -31.37 314.39 -9.27 -40.64
By element:
Atomic # 1 Polarization: 11.63 SS G_CDS: -5.54 Total: 6.09 kcal
Atomic # 6 Polarization: -19.37 SS G_CDS: -0.50 Total: -19.87 kcal
Atomic # 7 Polarization: -53.13 SS G_CDS: -0.42 Total: -53.56 kcal
Atomic # 8 Polarization: -40.56 SS G_CDS: -1.94 Total: -42.50 kcal
Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal
Atomic # 16 Polarization: 49.53 SS G_CDS: -0.58 Total: 48.94 kcal
Total LS contribution 4.74 Total: 4.74 kcal
Total: -31.37 -9.27 -40.64 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000722228445.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -0.953 kcal
(2) G-P(sol) polarization free energy of solvation -31.374 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.327 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.269 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.643 kcal
(6) G-S(sol) free energy of system = (1) + (5) -41.596 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds