Wall clock time and date at job start Mon Mar 30 2020 05:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46899 * 110.99900 * 2 1 4 4 C 1.53009 * 109.47071 * 180.02562 * 3 2 1 5 5 S 1.81397 * 109.47235 * 179.97438 * 4 3 2 6 6 O 1.42105 * 110.54275 * 68.37271 * 5 4 3 7 7 O 1.42101 * 110.54298 * 291.62373 * 5 4 3 8 8 N 1.65599 * 104.44825 * 179.97438 * 5 4 3 9 9 C 1.46496 * 120.00159 * 269.99969 * 8 5 4 10 10 C 1.50700 * 109.47090 * 95.00067 * 9 8 5 11 11 H 1.07993 * 120.00080 * 359.97438 * 10 9 8 12 12 C 1.37876 * 119.99752 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00353 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99865 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46901 * 60.00404 * 14 12 10 16 16 H 1.48494 * 109.47286 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47408 * 300.00378 * 14 12 10 18 18 C 1.46501 * 119.99889 * 90.00206 * 8 5 4 19 19 C 1.52990 * 117.49804 * 188.61821 * 18 8 5 20 20 C 1.52994 * 60.00276 * 252.50961 * 19 18 8 21 21 H 1.09000 * 109.47197 * 300.00315 * 1 2 3 22 22 H 1.09008 * 109.47162 * 60.00481 * 1 2 3 23 23 H 1.08999 * 109.47527 * 179.97438 * 1 2 3 24 24 H 1.00901 * 110.99904 * 236.04756 * 2 1 3 25 25 H 1.08995 * 109.47158 * 59.99908 * 3 2 1 26 26 H 1.09000 * 109.47157 * 299.99616 * 3 2 1 27 27 H 1.09004 * 109.47149 * 59.99965 * 4 3 2 28 28 H 1.09000 * 109.46805 * 299.99817 * 4 3 2 29 29 H 1.09001 * 109.47302 * 215.00738 * 9 8 5 30 30 H 1.09002 * 109.47116 * 334.99986 * 9 8 5 31 31 H 0.97001 * 120.00410 * 179.97438 * 13 12 10 32 32 H 1.09003 * 115.55067 * 334.33121 * 18 8 5 33 33 H 1.09004 * 117.50466 * 0.02562 * 19 18 8 34 34 H 1.09010 * 117.49989 * 145.01881 * 19 18 8 35 35 H 1.08999 * 117.50183 * 252.51144 * 20 19 18 36 36 H 1.09004 * 117.51923 * 107.47806 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5249 1.3306 -0.0006 5 16 4.1750 3.0241 -0.0014 6 8 3.8964 3.6658 1.2355 7 8 3.8954 3.6650 -1.2385 8 7 5.8202 2.8351 -0.0013 9 6 6.5479 2.7521 1.2674 10 6 6.7425 1.3052 1.6411 11 1 6.3618 0.5255 0.9982 12 6 7.4066 0.9769 2.8039 13 7 7.8698 1.9264 3.5872 14 14 7.6472 -0.8165 3.2676 15 1 8.4247 -1.5026 2.2045 16 1 8.3850 -0.9007 4.5535 17 1 6.3228 -1.4721 3.4135 18 6 6.5479 2.7510 -1.2701 19 6 8.0299 2.3761 -1.2108 20 6 7.6166 3.8112 -1.5431 21 1 -0.3633 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8901 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8305 -0.5261 -0.7814 25 1 1.6459 1.8948 0.8899 26 1 1.6459 1.8948 -0.8900 27 1 3.8741 0.8074 -0.8909 28 1 3.8747 0.8072 0.8891 29 1 7.5199 3.2339 1.1609 30 1 5.9767 3.2553 2.0475 31 1 8.3367 1.6955 4.4055 32 1 5.9702 2.3882 -2.1202 33 1 8.4636 2.1916 -0.2280 34 1 8.4277 1.7662 -2.0221 35 1 7.7424 4.1456 -2.5729 36 1 7.7781 4.5716 -0.7789 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722228445.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:25 Heat of formation + Delta-G solvation = -65.845547 kcal Electronic energy + Delta-G solvation = -18730.024450 eV Core-core repulsion = 15762.417969 eV Total energy + Delta-G solvation = -2967.606481 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.98831 -38.15903 -37.52442 -36.96347 -35.20560 -33.49624 -32.05009 -28.97007 -26.09628 -24.96217 -23.56045 -23.10343 -22.08993 -19.69637 -18.84091 -18.45733 -17.60694 -17.35450 -17.07346 -16.43678 -15.80179 -15.67597 -15.36337 -15.03402 -14.48593 -14.25741 -13.91132 -13.51490 -13.17786 -13.07060 -13.04940 -12.89788 -12.82499 -12.78172 -12.54294 -12.45134 -12.39762 -12.11663 -11.97906 -11.66941 -11.36570 -11.04933 -10.55227 -9.52637 -9.44617 -8.14561 -6.29001 -0.65885 1.45300 1.47328 1.53973 1.73295 2.43648 2.80916 3.11315 3.16362 3.23880 3.35959 3.58088 3.82012 4.04502 4.10705 4.21735 4.26501 4.32089 4.44405 4.57537 4.64163 4.85525 4.91537 5.01566 5.10050 5.19922 5.35523 5.46987 5.55222 5.79191 5.85718 5.96907 6.11020 6.38133 6.83401 7.41398 8.92901 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.014674 B = 0.008731 C = 0.006380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.688783 B = 3206.343975 C = 4387.729003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.698 5.698 3 C 0.065 3.935 4 C -0.609 4.609 5 S 2.620 3.380 6 O -0.998 6.998 7 O -0.982 6.982 8 N -0.967 5.967 9 C 0.258 3.742 10 C -0.540 4.540 11 H 0.076 0.924 12 C 0.011 3.989 13 N -0.930 5.930 14 Si 0.958 3.042 15 H -0.264 1.264 16 H -0.290 1.290 17 H -0.268 1.268 18 C 0.075 3.925 19 C -0.169 4.169 20 C -0.196 4.196 21 H 0.063 0.937 22 H 0.035 0.965 23 H 0.086 0.914 24 H 0.354 0.646 25 H 0.078 0.922 26 H 0.059 0.941 27 H 0.156 0.844 28 H 0.139 0.861 29 H 0.021 0.979 30 H 0.019 0.981 31 H 0.265 0.735 32 H 0.151 0.849 33 H 0.082 0.918 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.311 -4.376 -11.566 14.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.331 5.331 3 C -0.066 4.066 4 C -0.741 4.741 5 S 2.717 3.283 6 O -0.989 6.989 7 O -0.973 6.973 8 N -0.801 5.801 9 C 0.134 3.866 10 C -0.579 4.579 11 H 0.094 0.906 12 C -0.188 4.188 13 N -0.569 5.569 14 Si 0.783 3.217 15 H -0.188 1.188 16 H -0.216 1.216 17 H -0.193 1.193 18 C -0.032 4.032 19 C -0.208 4.208 20 C -0.235 4.235 21 H 0.082 0.918 22 H 0.054 0.946 23 H 0.105 0.895 24 H 0.173 0.827 25 H 0.096 0.904 26 H 0.077 0.923 27 H 0.174 0.826 28 H 0.157 0.843 29 H 0.039 0.961 30 H 0.037 0.963 31 H 0.074 0.926 32 H 0.168 0.832 33 H 0.101 0.899 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.641 -3.559 -10.696 14.204 hybrid contribution 0.435 -0.930 0.050 1.027 sum -8.207 -4.489 -10.646 14.171 Atomic orbital electron populations 1.22346 0.86090 1.03358 1.01111 1.60338 1.09263 1.12333 1.51140 1.21678 0.90006 0.92726 1.02201 1.30561 1.05773 1.24150 1.13640 1.04381 0.73086 0.78190 0.72660 1.93520 1.84279 1.74314 1.46775 1.93504 1.84425 1.73838 1.45492 1.56895 1.23683 1.88012 1.11541 1.18743 0.92154 0.96581 0.79092 1.21822 1.36706 0.92853 1.06497 0.90572 1.25806 0.95259 1.01554 0.96213 1.70066 1.38620 1.34448 1.13790 0.85613 0.78616 0.80031 0.77489 1.18838 1.21558 1.19308 1.21546 0.90357 1.04896 0.86400 1.23258 0.96189 0.97792 1.03588 1.23397 1.04358 0.92745 1.03015 0.91790 0.94620 0.89508 0.82659 0.90399 0.92337 0.82568 0.84283 0.96087 0.96326 0.92633 0.83205 0.89908 0.85911 0.85718 0.90972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.70 127.69 1.37 1.72 16 2 N -0.70 -15.72 6.86 -537.14 -3.68 -19.40 16 3 C 0.07 1.68 5.69 86.31 0.49 2.17 16 4 C -0.61 -17.67 6.44 71.99 0.46 -17.21 16 5 S 2.62 98.28 5.43 -56.49 -0.31 97.98 16 6 O -1.00 -46.52 16.53 -127.65 -2.11 -48.63 16 7 O -0.98 -37.19 17.15 -127.65 -2.19 -39.38 16 8 N -0.97 -39.23 3.04 -497.43 -1.51 -40.74 16 9 C 0.26 12.99 4.70 85.63 0.40 13.39 16 10 C -0.54 -27.65 8.74 25.60 0.22 -27.43 16 11 H 0.08 3.61 7.81 -2.91 -0.02 3.59 16 12 C 0.01 0.60 5.46 84.65 0.46 1.06 16 13 N -0.93 -54.03 13.29 21.45 0.28 -53.74 16 14 Si 0.96 41.89 29.54 68.60 2.03 43.92 16 15 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 16 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 17 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 18 C 0.07 2.51 6.01 44.99 0.27 2.78 16 19 C -0.17 -5.50 9.63 30.59 0.29 -5.21 16 20 C -0.20 -6.14 10.12 30.59 0.31 -5.83 16 21 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 22 H 0.04 0.54 8.14 -2.38 -0.02 0.52 16 23 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.35 6.54 8.81 -89.69 -0.79 5.75 16 25 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.16 3.51 8.14 -2.39 -0.02 3.49 16 28 H 0.14 4.57 8.14 -2.39 -0.02 4.55 16 29 H 0.02 1.13 6.56 -2.39 -0.02 1.11 16 30 H 0.02 1.07 6.81 -2.39 -0.02 1.06 16 31 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 32 H 0.15 3.98 7.97 -2.39 -0.02 3.96 16 33 H 0.08 3.36 6.15 -2.39 -0.01 3.35 16 34 H 0.12 3.10 8.14 -2.38 -0.02 3.08 16 35 H 0.12 3.03 8.14 -2.39 -0.02 3.01 16 36 H 0.07 2.57 8.06 -2.38 -0.02 2.55 16 Total: -1.00 -68.94 314.39 -2.93 -71.87 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 0.28 Total: 22.70 kcal Atomic # 6 Polarization: -38.85 SS G_CDS: 4.28 Total: -34.57 kcal Atomic # 7 Polarization: -108.98 SS G_CDS: -4.91 Total: -113.89 kcal Atomic # 8 Polarization: -83.71 SS G_CDS: -4.30 Total: -88.01 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Atomic # 16 Polarization: 98.28 SS G_CDS: -0.31 Total: 97.98 kcal Total: -68.94 -2.93 -71.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722228445.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.024 kcal (2) G-P(sol) polarization free energy of solvation -68.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds