Wall clock time and date at job start Mon Mar 30 2020 05:43:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46895 * 1
3 3 C 1.46899 * 110.99900 * 2 1
4 4 C 1.53009 * 109.47071 * 180.02562 * 3 2 1
5 5 S 1.81397 * 109.47235 * 179.97438 * 4 3 2
6 6 O 1.42105 * 110.54275 * 68.37271 * 5 4 3
7 7 O 1.42101 * 110.54298 * 291.62373 * 5 4 3
8 8 N 1.65599 * 104.44825 * 179.97438 * 5 4 3
9 9 C 1.46496 * 120.00159 * 269.99969 * 8 5 4
10 10 C 1.50700 * 109.47090 * 95.00067 * 9 8 5
11 11 H 1.07993 * 120.00080 * 359.97438 * 10 9 8
12 12 C 1.37876 * 119.99752 * 179.97438 * 10 9 8
13 13 N 1.31514 * 120.00353 * 0.02562 * 12 10 9
14 14 Si 1.86799 * 119.99865 * 179.97438 * 12 10 9
15 15 H 1.48506 * 109.46901 * 60.00404 * 14 12 10
16 16 H 1.48494 * 109.47286 * 180.02562 * 14 12 10
17 17 H 1.48499 * 109.47408 * 300.00378 * 14 12 10
18 18 C 1.46501 * 119.99889 * 90.00206 * 8 5 4
19 19 C 1.52990 * 117.49804 * 188.61821 * 18 8 5
20 20 C 1.52994 * 60.00276 * 252.50961 * 19 18 8
21 21 H 1.09000 * 109.47197 * 300.00315 * 1 2 3
22 22 H 1.09008 * 109.47162 * 60.00481 * 1 2 3
23 23 H 1.08999 * 109.47527 * 179.97438 * 1 2 3
24 24 H 1.00901 * 110.99904 * 236.04756 * 2 1 3
25 25 H 1.08995 * 109.47158 * 59.99908 * 3 2 1
26 26 H 1.09000 * 109.47157 * 299.99616 * 3 2 1
27 27 H 1.09004 * 109.47149 * 59.99965 * 4 3 2
28 28 H 1.09000 * 109.46805 * 299.99817 * 4 3 2
29 29 H 1.09001 * 109.47302 * 215.00738 * 9 8 5
30 30 H 1.09002 * 109.47116 * 334.99986 * 9 8 5
31 31 H 0.97001 * 120.00410 * 179.97438 * 13 12 10
32 32 H 1.09003 * 115.55067 * 334.33121 * 18 8 5
33 33 H 1.09004 * 117.50466 * 0.02562 * 19 18 8
34 34 H 1.09010 * 117.49989 * 145.01881 * 19 18 8
35 35 H 1.08999 * 117.50183 * 252.51144 * 20 19 18
36 36 H 1.09004 * 117.51923 * 107.47806 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4689 0.0000 0.0000
3 6 1.9954 1.3714 0.0000
4 6 3.5249 1.3306 -0.0006
5 16 4.1750 3.0241 -0.0014
6 8 3.8964 3.6658 1.2355
7 8 3.8954 3.6650 -1.2385
8 7 5.8202 2.8351 -0.0013
9 6 6.5479 2.7521 1.2674
10 6 6.7425 1.3052 1.6411
11 1 6.3618 0.5255 0.9982
12 6 7.4066 0.9769 2.8039
13 7 7.8698 1.9264 3.5872
14 14 7.6472 -0.8165 3.2676
15 1 8.4247 -1.5026 2.2045
16 1 8.3850 -0.9007 4.5535
17 1 6.3228 -1.4721 3.4135
18 6 6.5479 2.7510 -1.2701
19 6 8.0299 2.3761 -1.2108
20 6 7.6166 3.8112 -1.5431
21 1 -0.3633 0.5139 0.8899
22 1 -0.3634 0.5138 -0.8901
23 1 -0.3634 -1.0276 -0.0005
24 1 1.8305 -0.5261 -0.7814
25 1 1.6459 1.8948 0.8899
26 1 1.6459 1.8948 -0.8900
27 1 3.8741 0.8074 -0.8909
28 1 3.8747 0.8072 0.8891
29 1 7.5199 3.2339 1.1609
30 1 5.9767 3.2553 2.0475
31 1 8.3367 1.6955 4.4055
32 1 5.9702 2.3882 -2.1202
33 1 8.4636 2.1916 -0.2280
34 1 8.4277 1.7662 -2.0221
35 1 7.7424 4.1456 -2.5729
36 1 7.7781 4.5716 -0.7789
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000722228445.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:43:25
Heat of formation + Delta-G solvation = -65.845547 kcal
Electronic energy + Delta-G solvation = -18730.024450 eV
Core-core repulsion = 15762.417969 eV
Total energy + Delta-G solvation = -2967.606481 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 262.114 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-38.98831 -38.15903 -37.52442 -36.96347 -35.20560 -33.49624 -32.05009 -28.97007
-26.09628 -24.96217 -23.56045 -23.10343 -22.08993 -19.69637 -18.84091 -18.45733
-17.60694 -17.35450 -17.07346 -16.43678 -15.80179 -15.67597 -15.36337 -15.03402
-14.48593 -14.25741 -13.91132 -13.51490 -13.17786 -13.07060 -13.04940 -12.89788
-12.82499 -12.78172 -12.54294 -12.45134 -12.39762 -12.11663 -11.97906 -11.66941
-11.36570 -11.04933 -10.55227 -9.52637 -9.44617 -8.14561 -6.29001 -0.65885
1.45300 1.47328 1.53973 1.73295 2.43648 2.80916 3.11315 3.16362
3.23880 3.35959 3.58088 3.82012 4.04502 4.10705 4.21735 4.26501
4.32089 4.44405 4.57537 4.64163 4.85525 4.91537 5.01566 5.10050
5.19922 5.35523 5.46987 5.55222 5.79191 5.85718 5.96907 6.11020
6.38133 6.83401 7.41398 8.92901
Molecular weight = 262.11amu
Principal moments of inertia in cm(-1)
A = 0.014674 B = 0.008731 C = 0.006380
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1907.688783 B = 3206.343975 C = 4387.729003
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.020 3.980
2 N -0.698 5.698
3 C 0.065 3.935
4 C -0.609 4.609
5 S 2.620 3.380
6 O -0.998 6.998
7 O -0.982 6.982
8 N -0.967 5.967
9 C 0.258 3.742
10 C -0.540 4.540
11 H 0.076 0.924
12 C 0.011 3.989
13 N -0.930 5.930
14 Si 0.958 3.042
15 H -0.264 1.264
16 H -0.290 1.290
17 H -0.268 1.268
18 C 0.075 3.925
19 C -0.169 4.169
20 C -0.196 4.196
21 H 0.063 0.937
22 H 0.035 0.965
23 H 0.086 0.914
24 H 0.354 0.646
25 H 0.078 0.922
26 H 0.059 0.941
27 H 0.156 0.844
28 H 0.139 0.861
29 H 0.021 0.979
30 H 0.019 0.981
31 H 0.265 0.735
32 H 0.151 0.849
33 H 0.082 0.918
34 H 0.123 0.877
35 H 0.125 0.875
36 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.311 -4.376 -11.566 14.899
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 N -0.331 5.331
3 C -0.066 4.066
4 C -0.741 4.741
5 S 2.717 3.283
6 O -0.989 6.989
7 O -0.973 6.973
8 N -0.801 5.801
9 C 0.134 3.866
10 C -0.579 4.579
11 H 0.094 0.906
12 C -0.188 4.188
13 N -0.569 5.569
14 Si 0.783 3.217
15 H -0.188 1.188
16 H -0.216 1.216
17 H -0.193 1.193
18 C -0.032 4.032
19 C -0.208 4.208
20 C -0.235 4.235
21 H 0.082 0.918
22 H 0.054 0.946
23 H 0.105 0.895
24 H 0.173 0.827
25 H 0.096 0.904
26 H 0.077 0.923
27 H 0.174 0.826
28 H 0.157 0.843
29 H 0.039 0.961
30 H 0.037 0.963
31 H 0.074 0.926
32 H 0.168 0.832
33 H 0.101 0.899
34 H 0.141 0.859
35 H 0.143 0.857
36 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -8.641 -3.559 -10.696 14.204
hybrid contribution 0.435 -0.930 0.050 1.027
sum -8.207 -4.489 -10.646 14.171
Atomic orbital electron populations
1.22346 0.86090 1.03358 1.01111 1.60338 1.09263 1.12333 1.51140
1.21678 0.90006 0.92726 1.02201 1.30561 1.05773 1.24150 1.13640
1.04381 0.73086 0.78190 0.72660 1.93520 1.84279 1.74314 1.46775
1.93504 1.84425 1.73838 1.45492 1.56895 1.23683 1.88012 1.11541
1.18743 0.92154 0.96581 0.79092 1.21822 1.36706 0.92853 1.06497
0.90572 1.25806 0.95259 1.01554 0.96213 1.70066 1.38620 1.34448
1.13790 0.85613 0.78616 0.80031 0.77489 1.18838 1.21558 1.19308
1.21546 0.90357 1.04896 0.86400 1.23258 0.96189 0.97792 1.03588
1.23397 1.04358 0.92745 1.03015 0.91790 0.94620 0.89508 0.82659
0.90399 0.92337 0.82568 0.84283 0.96087 0.96326 0.92633 0.83205
0.89908 0.85911 0.85718 0.90972
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.35 10.70 127.69 1.37 1.72 16
2 N -0.70 -15.72 6.86 -537.14 -3.68 -19.40 16
3 C 0.07 1.68 5.69 86.31 0.49 2.17 16
4 C -0.61 -17.67 6.44 71.99 0.46 -17.21 16
5 S 2.62 98.28 5.43 -56.49 -0.31 97.98 16
6 O -1.00 -46.52 16.53 -127.65 -2.11 -48.63 16
7 O -0.98 -37.19 17.15 -127.65 -2.19 -39.38 16
8 N -0.97 -39.23 3.04 -497.43 -1.51 -40.74 16
9 C 0.26 12.99 4.70 85.63 0.40 13.39 16
10 C -0.54 -27.65 8.74 25.60 0.22 -27.43 16
11 H 0.08 3.61 7.81 -2.91 -0.02 3.59 16
12 C 0.01 0.60 5.46 84.65 0.46 1.06 16
13 N -0.93 -54.03 13.29 21.45 0.28 -53.74 16
14 Si 0.96 41.89 29.54 68.60 2.03 43.92 16
15 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16
16 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16
17 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16
18 C 0.07 2.51 6.01 44.99 0.27 2.78 16
19 C -0.17 -5.50 9.63 30.59 0.29 -5.21 16
20 C -0.20 -6.14 10.12 30.59 0.31 -5.83 16
21 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16
22 H 0.04 0.54 8.14 -2.38 -0.02 0.52 16
23 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16
24 H 0.35 6.54 8.81 -89.69 -0.79 5.75 16
25 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16
26 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16
27 H 0.16 3.51 8.14 -2.39 -0.02 3.49 16
28 H 0.14 4.57 8.14 -2.39 -0.02 4.55 16
29 H 0.02 1.13 6.56 -2.39 -0.02 1.11 16
30 H 0.02 1.07 6.81 -2.39 -0.02 1.06 16
31 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16
32 H 0.15 3.98 7.97 -2.39 -0.02 3.96 16
33 H 0.08 3.36 6.15 -2.39 -0.01 3.35 16
34 H 0.12 3.10 8.14 -2.38 -0.02 3.08 16
35 H 0.12 3.03 8.14 -2.39 -0.02 3.01 16
36 H 0.07 2.57 8.06 -2.38 -0.02 2.55 16
Total: -1.00 -68.94 314.39 -2.93 -71.87
By element:
Atomic # 1 Polarization: 22.42 SS G_CDS: 0.28 Total: 22.70 kcal
Atomic # 6 Polarization: -38.85 SS G_CDS: 4.28 Total: -34.57 kcal
Atomic # 7 Polarization: -108.98 SS G_CDS: -4.91 Total: -113.89 kcal
Atomic # 8 Polarization: -83.71 SS G_CDS: -4.30 Total: -88.01 kcal
Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal
Atomic # 16 Polarization: 98.28 SS G_CDS: -0.31 Total: 97.98 kcal
Total: -68.94 -2.93 -71.87 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000722228445.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 6.024 kcal
(2) G-P(sol) polarization free energy of solvation -68.942 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.918 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.928 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.869 kcal
(6) G-S(sol) free energy of system = (1) + (5) -65.846 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds