Wall clock time and date at job start Mon Mar 30 2020 05:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46500 * 119.99768 * 2 1 4 4 C 1.50706 * 109.46949 * 275.00438 * 3 2 1 5 5 H 1.07995 * 120.00167 * 359.72205 * 4 3 2 6 6 C 1.37879 * 119.99394 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 3 8 8 Si 1.86798 * 120.00608 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47353 * 89.99430 * 8 6 4 10 10 H 1.48494 * 109.47031 * 209.99977 * 8 6 4 11 11 H 1.48504 * 109.46680 * 329.99678 * 8 6 4 12 12 S 1.65594 * 120.00146 * 180.02562 * 2 1 3 13 13 O 1.42102 * 104.28206 * 26.06389 * 12 2 1 14 14 O 1.42101 * 104.27941 * 153.92473 * 12 2 1 15 15 C 1.81404 * 104.44789 * 269.99546 * 12 2 1 16 16 C 1.52999 * 109.47370 * 180.02562 * 15 12 2 17 17 H 1.08992 * 110.64585 * 308.15352 * 16 15 12 18 18 C 1.54589 * 110.72604 * 184.99562 * 16 15 12 19 19 C 1.53991 * 105.14595 * 219.68624 * 18 16 15 20 20 N 1.47907 * 107.05476 * 358.77448 * 19 18 16 21 21 C 1.48536 * 105.81656 * 25.33164 * 20 19 18 22 22 H 1.09000 * 109.47298 * 90.00028 * 1 2 3 23 23 H 1.09005 * 109.46612 * 209.99569 * 1 2 3 24 24 H 1.09000 * 109.47360 * 329.99153 * 1 2 3 25 25 H 1.09000 * 109.47175 * 155.00464 * 3 2 1 26 26 H 1.09001 * 109.47297 * 34.99971 * 3 2 1 27 27 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 28 28 H 1.09002 * 109.46685 * 299.99881 * 15 12 2 29 29 H 1.09000 * 109.47157 * 59.99548 * 15 12 2 30 30 H 1.09001 * 110.31000 * 338.60898 * 18 16 15 31 31 H 1.09011 * 110.30772 * 100.66848 * 18 16 15 32 32 H 1.08995 * 109.92120 * 118.12628 * 19 18 16 33 33 H 1.08998 * 109.91645 * 239.43070 * 19 18 16 34 34 H 1.00898 * 110.99958 * 264.81830 * 20 19 18 35 35 H 1.09004 * 110.66406 * 202.35575 * 21 20 19 36 36 H 1.09004 * 110.66549 * 79.23183 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3413 1.7658 -1.4155 5 1 1.9323 1.1915 -2.2336 6 6 2.9995 2.9510 -1.6663 7 7 3.1255 3.3845 -2.9016 8 14 3.7137 3.9404 -0.2519 9 1 5.1110 3.5056 0.0005 10 1 3.6997 5.3837 -0.6008 11 1 2.8980 3.7182 0.9690 12 16 2.2930 -1.4341 -0.0006 13 8 1.3970 -2.3559 -0.6061 14 8 3.5395 -1.1188 -0.6058 15 6 2.5195 -1.8267 1.7559 16 6 3.2821 -3.1464 1.8893 17 1 2.8069 -3.9267 1.2949 18 6 3.3826 -3.5727 3.3719 19 6 4.8054 -4.1397 3.5319 20 7 5.4543 -4.0641 2.2049 21 6 4.7654 -2.9662 1.4793 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3633 -0.8901 0.5138 24 1 -0.3634 0.8899 0.5140 25 1 3.1858 1.1178 0.4342 26 1 1.6501 2.0043 0.5894 27 1 3.5889 4.2181 -3.0781 28 1 3.0868 -1.0295 2.2361 29 1 1.5453 -1.9195 2.2360 30 1 3.2435 -2.7102 4.0238 31 1 2.6408 -4.3392 3.5962 32 1 5.3640 -3.5431 4.2529 33 1 4.7566 -5.1772 3.8626 34 1 5.3647 -4.9378 1.7083 35 1 4.8837 -3.0834 0.4021 36 1 5.1395 -1.9956 1.8051 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722231390.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:40 Heat of formation + Delta-G solvation = -63.845541 kcal Electronic energy + Delta-G solvation = -18743.050112 eV Core-core repulsion = 15775.530358 eV Total energy + Delta-G solvation = -2967.519754 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.93210 -36.60256 -35.73424 -35.29582 -32.45705 -32.37263 -29.42590 -28.40851 -26.14028 -25.11494 -21.96685 -21.93869 -20.43006 -18.33150 -17.29700 -16.98738 -16.61323 -15.95788 -15.75802 -14.78357 -14.64979 -14.27982 -13.93105 -13.69197 -13.10328 -12.64983 -12.53894 -12.47305 -12.40266 -12.21422 -11.78297 -11.60683 -11.52697 -11.37886 -11.30254 -11.18665 -10.84268 -10.65831 -10.47766 -10.35659 -10.10058 -9.52896 -8.86777 -8.58310 -8.10366 -6.06622 -4.05506 0.68681 3.19586 3.27876 3.31287 3.35671 3.93859 4.22844 4.32919 4.38634 4.46128 4.53196 4.82213 4.90493 5.10706 5.14311 5.19581 5.36230 5.41297 5.42487 5.55205 5.62911 5.76967 5.87066 5.94451 6.02484 6.18363 6.39877 6.48562 6.66323 7.01215 7.13421 7.31533 7.58175 8.50730 8.99630 9.52030 11.07190 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.025103 B = 0.006411 C = 0.005788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.120347 B = 4366.563412 C = 4836.541877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.986 5.986 3 C 0.225 3.775 4 C -0.528 4.528 5 H 0.078 0.922 6 C 0.072 3.928 7 N -0.895 5.895 8 Si 0.871 3.129 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.266 1.266 12 S 2.604 3.396 13 O -0.969 6.969 14 O -0.929 6.929 15 C -0.633 4.633 16 C -0.114 4.114 17 H 0.087 0.913 18 C -0.140 4.140 19 C 0.040 3.960 20 N -0.672 5.672 21 C 0.031 3.969 22 H 0.056 0.944 23 H 0.053 0.947 24 H 0.067 0.933 25 H 0.030 0.970 26 H 0.033 0.967 27 H 0.265 0.735 28 H 0.132 0.868 29 H 0.126 0.874 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.338 0.662 35 H 0.090 0.910 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.461 -12.356 14.370 19.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.825 5.825 3 C 0.102 3.898 4 C -0.567 4.567 5 H 0.096 0.904 6 C -0.130 4.130 7 N -0.534 5.534 8 Si 0.697 3.303 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.190 1.190 12 S 2.694 3.306 13 O -0.960 6.960 14 O -0.919 6.919 15 C -0.760 4.760 16 C -0.136 4.136 17 H 0.105 0.895 18 C -0.180 4.180 19 C -0.090 4.090 20 N -0.298 5.298 21 C -0.099 4.099 22 H 0.075 0.925 23 H 0.072 0.928 24 H 0.086 0.914 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.075 0.925 28 H 0.150 0.850 29 H 0.145 0.855 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.154 0.846 35 H 0.108 0.892 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.495 -12.288 13.728 18.431 hybrid contribution -0.722 0.510 1.168 1.465 sum -1.218 -11.778 14.896 19.029 Atomic orbital electron populations 1.21261 0.79558 1.01039 1.02155 1.57171 1.14291 1.22080 1.88988 1.19496 0.90830 0.80605 0.98869 1.21348 1.36750 1.06774 0.91793 0.90378 1.24873 0.95432 0.97214 0.95489 1.69898 1.42633 1.22008 1.18838 0.86948 0.80436 0.79845 0.83053 1.19735 1.20936 1.19027 1.05281 0.74700 0.73478 0.77103 1.93535 1.65160 1.64040 1.73233 1.93647 1.43845 1.82392 1.72030 1.30831 1.09165 1.05642 1.30347 1.22469 0.97444 0.94855 0.98834 0.89478 1.22848 0.98279 1.01573 0.95338 1.22778 0.92442 1.00895 0.92894 1.62679 1.54717 1.08595 1.03825 1.23546 0.89333 0.97144 0.99862 0.92524 0.92784 0.91438 0.95265 0.94878 0.92541 0.84993 0.85526 0.90558 0.91077 0.90371 0.91447 0.84642 0.89176 0.88772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.74 10.24 59.85 0.61 2.35 16 2 N -0.99 -19.38 3.10 -123.04 -0.38 -19.76 16 3 C 0.23 5.18 4.10 -5.19 -0.02 5.16 16 4 C -0.53 -15.05 9.94 -34.44 -0.34 -15.39 16 5 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 6 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 7 N -0.90 -27.64 13.96 55.43 0.77 -26.86 16 8 Si 0.87 20.88 27.47 -169.99 -4.67 16.21 16 9 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.27 -5.85 6.54 56.52 0.37 -5.48 16 12 S 2.60 47.33 5.17 -107.50 -0.56 46.78 16 13 O -0.97 -19.28 17.09 -57.54 -0.98 -20.26 16 14 O -0.93 -20.52 15.93 -57.54 -0.92 -21.44 16 15 C -0.63 -7.93 5.53 37.16 0.21 -7.73 16 16 C -0.11 -1.34 3.03 -88.76 -0.27 -1.61 16 17 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 18 C -0.14 -1.31 6.51 -25.38 -0.17 -1.48 16 19 C 0.04 0.36 7.52 -2.75 -0.02 0.34 16 20 N -0.67 -7.42 7.51 -110.08 -0.83 -8.25 16 21 C 0.03 0.39 6.18 -1.90 -0.01 0.38 16 22 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 23 H 0.05 0.71 7.79 -51.93 -0.40 0.30 16 24 H 0.07 0.98 7.94 -51.93 -0.41 0.57 16 25 H 0.03 0.66 7.04 -51.93 -0.37 0.29 16 26 H 0.03 0.72 7.02 -51.93 -0.36 0.35 16 27 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 28 H 0.13 1.53 7.99 -51.92 -0.41 1.11 16 29 H 0.13 1.29 8.14 -51.92 -0.42 0.86 16 30 H 0.08 0.68 7.85 -51.93 -0.41 0.27 16 31 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.34 3.15 8.92 -39.29 -0.35 2.80 16 35 H 0.09 1.23 7.71 -51.93 -0.40 0.82 16 36 H 0.09 1.26 7.94 -51.93 -0.41 0.85 16 LS Contribution 304.91 15.07 4.59 4.59 Total: -1.00 -34.90 304.91 -8.73 -43.63 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -5.66 Total: 1.31 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: -0.11 Total: -15.96 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: -0.43 Total: -54.87 kcal Atomic # 8 Polarization: -39.80 SS G_CDS: -1.90 Total: -41.70 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.67 Total: 16.21 kcal Atomic # 16 Polarization: 47.33 SS G_CDS: -0.56 Total: 46.78 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -34.90 -8.73 -43.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722231390.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.214 kcal (2) G-P(sol) polarization free energy of solvation -34.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds