Wall clock time and date at job start Mon Mar 30 2020 05:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46500 * 119.99768 * 2 1 4 4 C 1.50706 * 109.46949 * 275.00438 * 3 2 1 5 5 H 1.07995 * 120.00167 * 359.72205 * 4 3 2 6 6 C 1.37879 * 119.99394 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 3 8 8 Si 1.86798 * 120.00608 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47353 * 89.99430 * 8 6 4 10 10 H 1.48494 * 109.47031 * 209.99977 * 8 6 4 11 11 H 1.48504 * 109.46680 * 329.99678 * 8 6 4 12 12 S 1.65594 * 120.00146 * 180.02562 * 2 1 3 13 13 O 1.42102 * 104.28206 * 26.06389 * 12 2 1 14 14 O 1.42101 * 104.27941 * 153.92473 * 12 2 1 15 15 C 1.81404 * 104.44789 * 269.99546 * 12 2 1 16 16 C 1.52999 * 109.47370 * 180.02562 * 15 12 2 17 17 H 1.08992 * 110.64585 * 308.15352 * 16 15 12 18 18 C 1.54589 * 110.72604 * 184.99562 * 16 15 12 19 19 C 1.53991 * 105.14595 * 219.68624 * 18 16 15 20 20 N 1.47907 * 107.05476 * 358.77448 * 19 18 16 21 21 C 1.48536 * 105.81656 * 25.33164 * 20 19 18 22 22 H 1.09000 * 109.47298 * 90.00028 * 1 2 3 23 23 H 1.09005 * 109.46612 * 209.99569 * 1 2 3 24 24 H 1.09000 * 109.47360 * 329.99153 * 1 2 3 25 25 H 1.09000 * 109.47175 * 155.00464 * 3 2 1 26 26 H 1.09001 * 109.47297 * 34.99971 * 3 2 1 27 27 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 28 28 H 1.09002 * 109.46685 * 299.99881 * 15 12 2 29 29 H 1.09000 * 109.47157 * 59.99548 * 15 12 2 30 30 H 1.09001 * 110.31000 * 338.60898 * 18 16 15 31 31 H 1.09011 * 110.30772 * 100.66848 * 18 16 15 32 32 H 1.08995 * 109.92120 * 118.12628 * 19 18 16 33 33 H 1.08998 * 109.91645 * 239.43070 * 19 18 16 34 34 H 1.00898 * 110.99958 * 264.81830 * 20 19 18 35 35 H 1.09004 * 110.66406 * 202.35575 * 21 20 19 36 36 H 1.09004 * 110.66549 * 79.23183 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3413 1.7658 -1.4155 5 1 1.9323 1.1915 -2.2336 6 6 2.9995 2.9510 -1.6663 7 7 3.1255 3.3845 -2.9016 8 14 3.7137 3.9404 -0.2519 9 1 5.1110 3.5056 0.0005 10 1 3.6997 5.3837 -0.6008 11 1 2.8980 3.7182 0.9690 12 16 2.2930 -1.4341 -0.0006 13 8 1.3970 -2.3559 -0.6061 14 8 3.5395 -1.1188 -0.6058 15 6 2.5195 -1.8267 1.7559 16 6 3.2821 -3.1464 1.8893 17 1 2.8069 -3.9267 1.2949 18 6 3.3826 -3.5727 3.3719 19 6 4.8054 -4.1397 3.5319 20 7 5.4543 -4.0641 2.2049 21 6 4.7654 -2.9662 1.4793 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3633 -0.8901 0.5138 24 1 -0.3634 0.8899 0.5140 25 1 3.1858 1.1178 0.4342 26 1 1.6501 2.0043 0.5894 27 1 3.5889 4.2181 -3.0781 28 1 3.0868 -1.0295 2.2361 29 1 1.5453 -1.9195 2.2360 30 1 3.2435 -2.7102 4.0238 31 1 2.6408 -4.3392 3.5962 32 1 5.3640 -3.5431 4.2529 33 1 4.7566 -5.1772 3.8626 34 1 5.3647 -4.9378 1.7083 35 1 4.8837 -3.0834 0.4021 36 1 5.1395 -1.9956 1.8051 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722231390.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:40 Heat of formation + Delta-G solvation = -93.590980 kcal Electronic energy + Delta-G solvation = -18744.339971 eV Core-core repulsion = 15775.530358 eV Total energy + Delta-G solvation = -2968.809613 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.77295 -38.12858 -37.32221 -36.83434 -34.49426 -33.39447 -30.26126 -30.19619 -27.21773 -26.60991 -23.80908 -22.79786 -21.27643 -19.78108 -19.10230 -18.49824 -17.87538 -17.27323 -17.13974 -16.29631 -15.76601 -15.54607 -15.22183 -14.70422 -14.62558 -14.41430 -14.07399 -13.54820 -13.38689 -13.30964 -13.14682 -13.13037 -13.07492 -12.93771 -12.42598 -12.32858 -12.18770 -12.15429 -11.99447 -11.70273 -11.58110 -11.31881 -10.76569 -9.70692 -9.67462 -8.27131 -6.32833 -0.68846 1.37364 1.42801 1.50512 1.79744 2.37215 2.95522 3.06744 3.14947 3.20487 3.43173 3.63592 3.78905 3.98529 4.15575 4.21018 4.34911 4.43846 4.56821 4.64200 4.67921 4.76129 4.85288 4.91877 4.99679 5.06968 5.07821 5.20908 5.33488 5.50794 5.69104 5.75034 6.32798 6.38937 6.70126 7.29638 8.91254 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.025103 B = 0.006411 C = 0.005788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.120347 B = 4366.563412 C = 4836.541877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.999 5.999 3 C 0.230 3.770 4 C -0.541 4.541 5 H 0.019 0.981 6 C 0.002 3.998 7 N -0.954 5.954 8 Si 0.946 3.054 9 H -0.268 1.268 10 H -0.281 1.281 11 H -0.222 1.222 12 S 2.589 3.411 13 O -0.999 6.999 14 O -0.985 6.985 15 C -0.590 4.590 16 C -0.121 4.121 17 H 0.090 0.910 18 C -0.132 4.132 19 C 0.037 3.963 20 N -0.683 5.683 21 C 0.023 3.977 22 H 0.027 0.973 23 H 0.091 0.909 24 H 0.090 0.910 25 H 0.041 0.959 26 H 0.060 0.940 27 H 0.267 0.733 28 H 0.153 0.847 29 H 0.167 0.833 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.346 0.654 35 H 0.068 0.932 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.788 -12.867 19.081 23.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.836 5.836 3 C 0.105 3.895 4 C -0.580 4.580 5 H 0.038 0.962 6 C -0.195 4.195 7 N -0.594 5.594 8 Si 0.768 3.232 9 H -0.193 1.193 10 H -0.207 1.207 11 H -0.144 1.144 12 S 2.687 3.313 13 O -0.990 6.990 14 O -0.976 6.976 15 C -0.723 4.723 16 C -0.143 4.143 17 H 0.108 0.892 18 C -0.172 4.172 19 C -0.093 4.093 20 N -0.310 5.310 21 C -0.107 4.107 22 H 0.046 0.954 23 H 0.110 0.890 24 H 0.108 0.892 25 H 0.059 0.941 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.171 0.829 29 H 0.185 0.815 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.162 0.838 35 H 0.087 0.913 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.869 -12.812 18.380 22.422 hybrid contribution -0.629 0.506 -0.349 0.879 sum -1.499 -12.306 18.031 21.882 Atomic orbital electron populations 1.21502 0.78047 1.04046 1.01354 1.57104 1.15460 1.21150 1.89897 1.19308 0.92344 0.82575 0.95260 1.21723 1.36201 1.06487 0.93590 0.96248 1.26028 0.95832 0.98724 0.98942 1.70098 1.44325 1.22936 1.22063 0.85749 0.79910 0.77409 0.80167 1.19317 1.20678 1.14439 1.05434 0.73244 0.72794 0.79801 1.93488 1.65419 1.64183 1.75896 1.93580 1.45609 1.82917 1.75456 1.30435 1.12095 1.06881 1.22917 1.22614 0.96253 0.94330 1.01144 0.89170 1.22847 0.98750 1.02676 0.92904 1.22890 0.92300 1.02396 0.91668 1.62648 1.55075 1.08543 1.04715 1.23506 0.90748 0.97548 0.98924 0.95425 0.89004 0.89162 0.94104 0.92186 0.92451 0.82851 0.81511 0.89328 0.88993 0.90216 0.89326 0.83786 0.91337 0.89608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.03 10.24 127.77 1.31 4.33 16 2 N -1.00 -38.41 3.10 -543.20 -1.68 -40.09 16 3 C 0.23 10.31 4.10 85.63 0.35 10.66 16 4 C -0.54 -31.97 9.94 25.60 0.25 -31.71 16 5 H 0.02 1.31 8.06 -2.91 -0.02 1.29 16 6 C 0.00 0.10 5.47 84.66 0.46 0.56 16 7 N -0.95 -61.56 13.96 21.45 0.30 -61.26 16 8 Si 0.95 42.45 27.47 68.60 1.88 44.33 16 9 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.22 -8.37 6.54 99.48 0.65 -7.72 16 12 S 2.59 93.05 5.17 -56.49 -0.29 92.76 16 13 O -1.00 -40.03 17.09 -127.65 -2.18 -42.21 16 14 O -0.99 -45.14 15.93 -127.65 -2.03 -47.17 16 15 C -0.59 -12.43 5.53 71.98 0.40 -12.03 16 16 C -0.12 -2.44 3.03 -9.59 -0.03 -2.47 16 17 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 18 C -0.13 -1.81 6.51 31.47 0.20 -1.60 16 19 C 0.04 0.54 7.52 86.44 0.65 1.19 16 20 N -0.68 -13.71 7.51 -502.18 -3.77 -17.49 16 21 C 0.02 0.56 6.18 86.65 0.54 1.09 16 22 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.09 2.16 7.79 -2.38 -0.02 2.14 16 24 H 0.09 2.40 7.94 -2.39 -0.02 2.38 16 25 H 0.04 1.75 7.04 -2.39 -0.02 1.73 16 26 H 0.06 2.39 7.02 -2.39 -0.02 2.37 16 27 H 0.27 15.94 8.31 -92.70 -0.77 15.17 16 28 H 0.15 2.79 7.99 -2.39 -0.02 2.77 16 29 H 0.17 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.09 1.05 7.85 -2.39 -0.02 1.03 16 31 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.35 5.88 8.92 -89.70 -0.80 5.08 16 35 H 0.07 1.92 7.71 -2.39 -0.02 1.91 16 36 H 0.09 2.20 7.94 -2.38 -0.02 2.18 16 Total: -1.00 -82.11 304.91 -3.44 -85.54 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: 0.21 Total: 15.58 kcal Atomic # 6 Polarization: -34.12 SS G_CDS: 4.14 Total: -29.99 kcal Atomic # 7 Polarization: -113.68 SS G_CDS: -5.16 Total: -118.84 kcal Atomic # 8 Polarization: -85.17 SS G_CDS: -4.21 Total: -89.38 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 1.88 Total: 44.33 kcal Atomic # 16 Polarization: 93.05 SS G_CDS: -0.29 Total: 92.76 kcal Total: -82.11 -3.44 -85.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722231390.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.048 kcal (2) G-P(sol) polarization free energy of solvation -82.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds