Wall clock time and date at job start Mon Mar 30 2020 05:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00225 * 2 1 4 4 C 1.50710 * 109.47211 * 84.99665 * 3 2 1 5 5 H 1.08006 * 119.99595 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.00111 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99826 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00161 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47024 * 59.99414 * 8 6 4 10 10 H 1.48492 * 109.47391 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.46646 * 299.99911 * 8 6 4 12 12 S 1.65600 * 120.00084 * 179.97438 * 2 1 3 13 13 O 1.42108 * 104.27731 * 206.07538 * 12 2 1 14 14 O 1.42103 * 104.27533 * 333.92880 * 12 2 1 15 15 C 1.81395 * 104.45142 * 90.00227 * 12 2 1 16 16 H 1.09007 * 109.50372 * 299.92275 * 15 12 2 17 17 C 1.53112 * 109.50559 * 179.80429 * 15 12 2 18 18 C 1.53118 * 109.16498 * 182.40292 * 17 15 12 19 19 C 1.53043 * 109.27468 * 57.65417 * 18 17 15 20 20 N 1.46846 * 109.52445 * 300.82186 * 19 18 17 21 21 C 1.46850 * 111.19514 * 61.74064 * 20 19 18 22 22 H 1.09002 * 109.47391 * 270.00005 * 1 2 3 23 23 H 1.09001 * 109.46813 * 150.00061 * 1 2 3 24 24 H 1.09004 * 109.47041 * 30.00189 * 1 2 3 25 25 H 1.08992 * 109.47737 * 204.99718 * 3 2 1 26 26 H 1.09002 * 109.47072 * 324.99914 * 3 2 1 27 27 H 0.97007 * 119.99675 * 179.97438 * 7 6 4 28 28 H 1.09003 * 109.52604 * 302.30799 * 17 15 12 29 29 H 1.09007 * 109.52392 * 62.49791 * 17 15 12 30 30 H 1.09000 * 109.50624 * 297.71690 * 18 17 15 31 31 H 1.08993 * 109.53900 * 177.61478 * 18 17 15 32 32 H 1.08998 * 109.46102 * 180.80898 * 19 18 17 33 33 H 1.08993 * 109.46436 * 60.83732 * 19 18 17 34 34 H 1.00892 * 111.00426 * 185.84101 * 20 19 18 35 35 H 1.09001 * 109.45723 * 178.24148 * 21 20 19 36 36 H 1.08998 * 109.45111 * 58.27424 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7657 1.4155 5 1 1.9288 1.1935 2.2333 6 6 2.9997 2.9508 1.6664 7 7 3.5026 3.6473 0.6706 8 14 3.1787 3.5666 3.4209 9 1 3.9252 2.5646 4.2234 10 1 3.9200 4.8532 3.4208 11 1 1.8325 3.7716 4.0132 12 16 2.2930 -1.4341 0.0006 13 8 3.5395 -1.1188 0.6058 14 8 1.3969 -2.3558 0.6063 15 6 2.5194 -1.8269 -1.7557 16 1 1.5454 -1.9212 -2.2361 17 6 3.2863 -3.1453 -1.8900 18 6 3.5254 -3.4389 -3.3737 19 6 4.2928 -2.2732 -4.0020 20 7 3.5175 -1.0356 -3.8482 21 6 3.3159 -0.7081 -2.4309 22 1 -0.3634 0.0000 1.0277 23 1 -0.3633 -0.8900 -0.5138 24 1 -0.3633 0.8900 -0.5139 25 1 3.1858 1.1177 -0.4342 26 1 1.6502 2.0043 -0.5895 27 1 3.9654 4.4814 0.8471 28 1 4.2440 -3.0637 -1.3759 29 1 2.7024 -3.9530 -1.4485 30 1 2.5676 -3.5590 -3.8799 31 1 4.1078 -4.3546 -3.4748 32 1 4.4522 -2.4726 -5.0617 33 1 5.2562 -2.1624 -3.5045 34 1 3.9572 -0.2704 -4.3371 35 1 2.7658 0.2294 -2.3496 36 1 4.2840 -0.6048 -1.9409 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722232336.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:47 Heat of formation + Delta-G solvation = -72.566880 kcal Electronic energy + Delta-G solvation = -19131.415577 eV Core-core repulsion = 16163.517637 eV Total energy + Delta-G solvation = -2967.897940 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.46711 -36.51156 -35.58787 -35.21097 -32.42566 -32.25781 -30.99837 -27.77015 -25.13502 -23.90221 -23.34257 -22.26708 -19.96140 -18.27508 -17.26111 -16.66072 -16.31177 -15.66220 -15.31954 -14.70303 -14.48124 -14.07709 -13.90952 -13.51300 -13.35719 -13.17861 -12.71145 -12.34415 -12.08646 -11.83159 -11.60007 -11.45804 -11.23598 -11.13087 -11.06879 -11.00815 -10.69499 -10.64147 -10.45581 -10.02956 -9.92086 -9.67604 -8.51443 -8.41673 -7.99835 -6.04767 -4.07536 0.81586 3.33588 3.35917 3.38627 3.44801 4.18209 4.34396 4.45982 4.52988 4.60634 4.82897 4.86937 5.18803 5.29722 5.35370 5.41483 5.53523 5.56340 5.60843 5.70890 5.80042 5.88293 5.96704 6.08301 6.15301 6.32487 6.53259 6.90593 7.16796 7.33083 7.38111 7.59054 7.93169 8.23036 8.94386 9.57130 11.03841 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.027073 B = 0.006806 C = 0.006165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.992903 B = 4113.021522 C = 4540.842143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.990 5.990 3 C 0.255 3.745 4 C -0.524 4.524 5 H 0.060 0.940 6 C 0.061 3.939 7 N -0.899 5.899 8 Si 0.896 3.104 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.276 1.276 12 S 2.608 3.392 13 O -0.936 6.936 14 O -0.973 6.973 15 C -0.598 4.598 16 H 0.135 0.865 17 C -0.109 4.109 18 C -0.107 4.107 19 C 0.053 3.947 20 N -0.683 5.683 21 C 0.077 3.923 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.067 0.933 25 H 0.039 0.961 26 H 0.036 0.964 27 H 0.263 0.737 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.033 0.967 34 H 0.347 0.653 35 H 0.096 0.904 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.153 -10.333 -9.845 14.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.829 5.829 3 C 0.133 3.867 4 C -0.563 4.563 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.538 5.538 8 Si 0.724 3.276 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.202 1.202 12 S 2.698 3.302 13 O -0.926 6.926 14 O -0.963 6.963 15 C -0.705 4.705 16 H 0.153 0.847 17 C -0.148 4.148 18 C -0.146 4.146 19 C -0.077 4.077 20 N -0.316 5.316 21 C -0.053 4.053 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.086 0.914 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.051 0.949 34 H 0.166 0.834 35 H 0.115 0.885 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.394 -10.934 -9.204 14.360 hybrid contribution 0.853 0.911 0.469 1.333 sum -0.541 -10.023 -8.735 13.306 Atomic orbital electron populations 1.21225 0.79924 1.01083 1.01632 1.57360 1.14145 1.22707 1.88731 1.19132 0.91030 0.78637 0.97853 1.21451 1.35822 1.06088 0.92975 0.92197 1.24914 0.95175 0.96516 0.97447 1.69903 1.37587 1.15377 1.30938 0.86579 0.78306 0.77930 0.84783 1.20018 1.21212 1.20188 1.05223 0.74561 0.73538 0.76894 1.93617 1.44202 1.82522 1.72240 1.93520 1.65156 1.64406 1.73229 1.30827 1.08221 1.03773 1.27711 0.84655 1.21370 1.00152 0.94229 0.99079 1.21487 1.01309 0.97339 0.94449 1.21959 0.94551 0.90726 1.00415 1.60241 1.53248 1.06082 1.11982 1.21643 0.99018 0.96101 0.88581 0.93016 0.92957 0.91421 0.94284 0.94654 0.92700 0.90770 0.90432 0.90881 0.91187 0.90704 0.94896 0.83419 0.88534 0.93025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.85 10.24 59.85 0.61 2.47 16 2 N -0.99 -20.30 2.88 -123.05 -0.35 -20.66 16 3 C 0.26 6.24 4.09 -5.19 -0.02 6.22 16 4 C -0.52 -14.75 9.38 -34.44 -0.32 -15.07 16 5 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.90 -25.96 13.29 55.43 0.74 -25.22 16 8 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 9 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 S 2.61 50.69 4.76 -107.50 -0.51 50.18 16 13 O -0.94 -21.93 16.85 -57.54 -0.97 -22.90 16 14 O -0.97 -20.23 17.09 -57.54 -0.98 -21.22 16 15 C -0.60 -8.86 3.02 -26.66 -0.08 -8.94 16 16 H 0.14 1.80 8.14 -51.92 -0.42 1.37 16 17 C -0.11 -1.41 5.29 -26.61 -0.14 -1.56 16 18 C -0.11 -1.15 6.09 -26.65 -0.16 -1.31 16 19 C 0.05 0.58 6.55 -3.83 -0.03 0.55 16 20 N -0.68 -8.59 6.85 -113.82 -0.78 -9.37 16 21 C 0.08 1.15 5.06 -3.83 -0.02 1.13 16 22 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 23 H 0.05 0.74 7.79 -51.93 -0.40 0.34 16 24 H 0.07 1.06 7.94 -51.93 -0.41 0.65 16 25 H 0.04 0.99 6.55 -51.93 -0.34 0.65 16 26 H 0.04 0.87 7.96 -51.93 -0.41 0.46 16 27 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.35 3.81 8.90 -39.30 -0.35 3.46 16 35 H 0.10 1.52 6.62 -51.93 -0.34 1.18 16 36 H 0.05 0.84 8.08 -51.93 -0.42 0.42 16 LS Contribution 302.86 15.07 4.56 4.56 Total: -1.00 -33.43 302.86 -9.19 -42.62 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -5.61 Total: -0.07 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -0.26 Total: -14.86 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: -0.40 Total: -55.25 kcal Atomic # 8 Polarization: -42.17 SS G_CDS: -1.95 Total: -44.12 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: 50.69 SS G_CDS: -0.51 Total: 50.18 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.43 -9.19 -42.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722232336.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.946 kcal (2) G-P(sol) polarization free energy of solvation -33.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds