Wall clock time and date at job start Mon Mar 30 2020 05:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46496 * 120.00143 * 2 1 4 4 C 1.50702 * 109.47420 * 274.99943 * 3 2 1 5 5 H 1.07999 * 119.99889 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00176 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00098 * 180.02562 * 6 4 3 8 8 Si 1.86806 * 119.99880 * 0.02562 * 6 4 3 9 9 H 1.48503 * 109.46717 * 89.99960 * 8 6 4 10 10 H 1.48499 * 109.47056 * 209.99346 * 8 6 4 11 11 H 1.48499 * 109.47252 * 330.00286 * 8 6 4 12 12 S 1.65608 * 119.99904 * 180.02562 * 2 1 3 13 13 O 1.42095 * 104.27841 * 26.07006 * 12 2 1 14 14 O 1.42102 * 104.27658 * 153.92720 * 12 2 1 15 15 C 1.81406 * 104.44741 * 269.99647 * 12 2 1 16 16 H 1.09001 * 109.49976 * 65.07705 * 15 12 2 17 17 C 1.53110 * 109.49973 * 185.19751 * 15 12 2 18 18 C 1.53121 * 109.15819 * 177.59712 * 17 15 12 19 19 C 1.53033 * 109.28071 * 302.34749 * 18 17 15 20 20 N 1.46843 * 109.52699 * 59.17583 * 19 18 17 21 21 C 1.46852 * 111.19671 * 298.26603 * 20 19 18 22 22 H 1.08999 * 109.46532 * 269.99642 * 1 2 3 23 23 H 1.09000 * 109.46877 * 29.99666 * 1 2 3 24 24 H 1.09000 * 109.47251 * 149.99772 * 1 2 3 25 25 H 1.08999 * 109.47129 * 35.00313 * 3 2 1 26 26 H 1.09006 * 109.47348 * 155.00378 * 3 2 1 27 27 H 0.97000 * 119.99533 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.52546 * 297.49905 * 17 15 12 29 29 H 1.08992 * 109.52693 * 57.69326 * 17 15 12 30 30 H 1.08997 * 109.50718 * 182.40112 * 18 17 15 31 31 H 1.09003 * 109.53700 * 62.30676 * 18 17 15 32 32 H 1.09005 * 109.45715 * 299.16258 * 19 18 17 33 33 H 1.08997 * 109.45597 * 179.19159 * 19 18 17 34 34 H 1.00904 * 110.99829 * 62.35154 * 20 19 18 35 35 H 1.09006 * 109.46088 * 301.71721 * 21 20 19 36 36 H 1.09005 * 109.45163 * 181.75369 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7657 -1.4154 5 1 1.9283 1.1939 -2.2331 6 6 2.9998 2.9508 -1.6663 7 7 3.1251 3.3848 -2.9015 8 14 3.7140 3.9402 -0.2518 9 1 5.1113 3.5053 0.0006 10 1 3.7002 5.3835 -0.6007 11 1 2.8983 3.7181 0.9691 12 16 2.2930 -1.4342 -0.0006 13 8 1.3970 -2.3559 -0.6062 14 8 3.5395 -1.1190 -0.6058 15 6 2.5194 -1.8269 1.7559 16 1 1.5482 -2.0085 2.2162 17 6 3.3923 -3.0775 1.8916 18 6 3.6280 -3.3670 3.3766 19 6 4.2823 -2.1483 4.0314 20 7 3.4084 -0.9787 3.8751 21 6 3.2059 -0.6529 2.4575 22 1 -0.3632 -0.0001 1.0277 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3634 -0.8900 -0.5139 25 1 1.6502 2.0042 0.5895 26 1 3.1859 1.1176 0.4343 27 1 3.5879 4.2188 -3.0779 28 1 2.8870 -3.9262 1.4308 29 1 4.3489 -2.9095 1.3970 30 1 4.2840 -4.2314 3.4793 31 1 2.6749 -3.5737 3.8635 32 1 5.2421 -1.9510 3.5537 33 1 4.4383 -2.3460 5.0919 34 1 2.5258 -1.1218 4.3427 35 1 4.1706 -0.4625 1.9872 36 1 2.5801 0.2358 2.3751 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722232338.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:50 Heat of formation + Delta-G solvation = -69.035898 kcal Electronic energy + Delta-G solvation = -19232.644595 eV Core-core repulsion = 16264.899770 eV Total energy + Delta-G solvation = -2967.744825 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.83216 -36.62889 -35.76782 -35.32181 -32.37666 -32.08377 -31.18143 -28.39747 -25.27416 -23.91882 -23.40795 -21.94310 -20.68080 -18.29692 -17.14853 -16.86196 -16.40237 -15.87340 -15.70305 -14.99220 -14.83236 -14.27029 -13.71396 -13.59251 -13.35451 -12.92192 -12.51880 -12.50000 -12.34698 -12.01430 -11.76888 -11.57056 -11.53889 -11.36714 -11.28954 -11.20258 -10.95463 -10.64874 -10.47891 -10.29644 -10.08073 -9.51906 -8.58074 -8.57369 -8.07953 -6.05985 -4.05100 0.68035 3.19508 3.29923 3.34081 3.37611 4.08371 4.24239 4.31105 4.39940 4.48080 4.65359 4.77474 5.01524 5.13872 5.22920 5.23841 5.32360 5.54032 5.54701 5.60793 5.66856 5.74367 5.84446 5.89623 5.98758 6.18837 6.44069 6.68088 6.75767 7.04001 7.19432 7.33058 7.59245 8.51262 8.99971 9.52708 11.07677 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.023032 B = 0.007953 C = 0.006728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.390191 B = 3519.916183 C = 4160.609118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.983 5.983 3 C 0.225 3.775 4 C -0.529 4.529 5 H 0.078 0.922 6 C 0.073 3.927 7 N -0.896 5.896 8 Si 0.870 3.130 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.263 1.263 12 S 2.610 3.390 13 O -0.970 6.970 14 O -0.930 6.930 15 C -0.643 4.643 16 H 0.129 0.871 17 C -0.107 4.107 18 C -0.147 4.147 19 C 0.052 3.948 20 N -0.673 5.673 21 C 0.074 3.926 22 H 0.039 0.961 23 H 0.082 0.918 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.032 0.968 27 H 0.265 0.735 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.341 0.659 35 H 0.092 0.908 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.622 -10.707 14.994 18.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.821 5.821 3 C 0.102 3.898 4 C -0.568 4.568 5 H 0.096 0.904 6 C -0.130 4.130 7 N -0.534 5.534 8 Si 0.696 3.304 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.188 1.188 12 S 2.700 3.300 13 O -0.960 6.960 14 O -0.920 6.920 15 C -0.751 4.751 16 H 0.147 0.853 17 C -0.145 4.145 18 C -0.187 4.187 19 C -0.078 4.078 20 N -0.301 5.301 21 C -0.056 4.056 22 H 0.057 0.943 23 H 0.100 0.900 24 H 0.089 0.911 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.158 0.842 35 H 0.110 0.890 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.768 -10.540 14.234 17.728 hybrid contribution -0.413 -0.025 0.960 1.046 sum -1.181 -10.565 15.194 18.544 Atomic orbital electron populations 1.21412 0.79640 1.04186 1.00177 1.57097 1.14316 1.21899 1.88837 1.19517 0.90891 0.80611 0.98825 1.21356 1.36724 1.06859 0.91835 0.90410 1.24873 0.95420 0.97205 0.95509 1.69899 1.42647 1.21977 1.18874 0.86960 0.80523 0.79803 0.83105 1.19714 1.20980 1.18808 1.05171 0.74593 0.73578 0.76635 1.93513 1.65169 1.64142 1.73220 1.93633 1.44100 1.82439 1.71869 1.31391 1.07932 1.06030 1.29765 0.85311 1.21341 0.99637 0.94720 0.98849 1.22144 1.01638 0.99798 0.95167 1.22097 0.97100 0.87946 1.00659 1.60631 1.19256 1.38151 1.12057 1.21945 1.01454 0.94153 0.88088 0.94256 0.89957 0.91121 0.94802 0.95065 0.92550 0.90644 0.90077 0.90820 0.91742 0.90441 0.90487 0.84185 0.88983 0.88661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.50 10.66 59.85 0.64 2.14 16 2 N -0.98 -19.20 2.73 -123.05 -0.34 -19.53 16 3 C 0.22 5.12 2.98 -5.19 -0.02 5.10 16 4 C -0.53 -15.01 9.94 -34.44 -0.34 -15.35 16 5 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 6 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 7 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 8 Si 0.87 20.90 27.47 -169.99 -4.67 16.23 16 9 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.26 -5.81 6.54 56.52 0.37 -5.44 16 12 S 2.61 48.51 4.83 -107.50 -0.52 47.99 16 13 O -0.97 -19.67 16.57 -57.54 -0.95 -20.62 16 14 O -0.93 -21.18 16.98 -57.54 -0.98 -22.16 16 15 C -0.64 -8.47 3.02 -26.66 -0.08 -8.55 16 16 H 0.13 1.40 8.14 -51.92 -0.42 0.98 16 17 C -0.11 -1.25 5.29 -26.61 -0.14 -1.39 16 18 C -0.15 -1.36 6.08 -26.65 -0.16 -1.52 16 19 C 0.05 0.50 6.55 -3.84 -0.03 0.48 16 20 N -0.67 -7.64 6.87 -113.82 -0.78 -8.42 16 21 C 0.07 1.01 4.88 -3.83 -0.02 0.99 16 22 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 24 H 0.07 1.13 6.91 -51.93 -0.36 0.77 16 25 H 0.03 0.73 7.17 -51.93 -0.37 0.36 16 26 H 0.03 0.70 6.07 -51.93 -0.32 0.38 16 27 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.34 3.26 8.86 -39.29 -0.35 2.91 16 35 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.10 1.31 6.67 -51.93 -0.35 0.97 16 LS Contribution 298.43 15.07 4.50 4.50 Total: -1.00 -34.63 298.43 -8.76 -43.39 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -5.55 Total: 1.56 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: -0.24 Total: -16.10 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: -0.34 Total: -54.79 kcal Atomic # 8 Polarization: -40.84 SS G_CDS: -1.93 Total: -42.77 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.67 Total: 16.23 kcal Atomic # 16 Polarization: 48.51 SS G_CDS: -0.52 Total: 47.99 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -34.63 -8.76 -43.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722232338.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.644 kcal (2) G-P(sol) polarization free energy of solvation -34.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds