Wall clock time and date at job start Mon Mar 30 2020 05:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46496 * 120.00143 * 2 1 4 4 C 1.50702 * 109.47420 * 274.99943 * 3 2 1 5 5 H 1.07999 * 119.99889 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00176 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00098 * 180.02562 * 6 4 3 8 8 Si 1.86806 * 119.99880 * 0.02562 * 6 4 3 9 9 H 1.48503 * 109.46717 * 89.99960 * 8 6 4 10 10 H 1.48499 * 109.47056 * 209.99346 * 8 6 4 11 11 H 1.48499 * 109.47252 * 330.00286 * 8 6 4 12 12 S 1.65608 * 119.99904 * 180.02562 * 2 1 3 13 13 O 1.42095 * 104.27841 * 26.07006 * 12 2 1 14 14 O 1.42102 * 104.27658 * 153.92720 * 12 2 1 15 15 C 1.81406 * 104.44741 * 269.99647 * 12 2 1 16 16 H 1.09001 * 109.49976 * 65.07705 * 15 12 2 17 17 C 1.53110 * 109.49973 * 185.19751 * 15 12 2 18 18 C 1.53121 * 109.15819 * 177.59712 * 17 15 12 19 19 C 1.53033 * 109.28071 * 302.34749 * 18 17 15 20 20 N 1.46843 * 109.52699 * 59.17583 * 19 18 17 21 21 C 1.46852 * 111.19671 * 298.26603 * 20 19 18 22 22 H 1.08999 * 109.46532 * 269.99642 * 1 2 3 23 23 H 1.09000 * 109.46877 * 29.99666 * 1 2 3 24 24 H 1.09000 * 109.47251 * 149.99772 * 1 2 3 25 25 H 1.08999 * 109.47129 * 35.00313 * 3 2 1 26 26 H 1.09006 * 109.47348 * 155.00378 * 3 2 1 27 27 H 0.97000 * 119.99533 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.52546 * 297.49905 * 17 15 12 29 29 H 1.08992 * 109.52693 * 57.69326 * 17 15 12 30 30 H 1.08997 * 109.50718 * 182.40112 * 18 17 15 31 31 H 1.09003 * 109.53700 * 62.30676 * 18 17 15 32 32 H 1.09005 * 109.45715 * 299.16258 * 19 18 17 33 33 H 1.08997 * 109.45597 * 179.19159 * 19 18 17 34 34 H 1.00904 * 110.99829 * 62.35154 * 20 19 18 35 35 H 1.09006 * 109.46088 * 301.71721 * 21 20 19 36 36 H 1.09005 * 109.45163 * 181.75369 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7657 -1.4154 5 1 1.9283 1.1939 -2.2331 6 6 2.9998 2.9508 -1.6663 7 7 3.1251 3.3848 -2.9015 8 14 3.7140 3.9402 -0.2518 9 1 5.1113 3.5053 0.0006 10 1 3.7002 5.3835 -0.6007 11 1 2.8983 3.7181 0.9691 12 16 2.2930 -1.4342 -0.0006 13 8 1.3970 -2.3559 -0.6062 14 8 3.5395 -1.1190 -0.6058 15 6 2.5194 -1.8269 1.7559 16 1 1.5482 -2.0085 2.2162 17 6 3.3923 -3.0775 1.8916 18 6 3.6280 -3.3670 3.3766 19 6 4.2823 -2.1483 4.0314 20 7 3.4084 -0.9787 3.8751 21 6 3.2059 -0.6529 2.4575 22 1 -0.3632 -0.0001 1.0277 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3634 -0.8900 -0.5139 25 1 1.6502 2.0042 0.5895 26 1 3.1859 1.1176 0.4343 27 1 3.5879 4.2188 -3.0779 28 1 2.8870 -3.9262 1.4308 29 1 4.3489 -2.9095 1.3970 30 1 4.2840 -4.2314 3.4793 31 1 2.6749 -3.5737 3.8635 32 1 5.2421 -1.9510 3.5537 33 1 4.4383 -2.3460 5.0919 34 1 2.5258 -1.1218 4.3427 35 1 4.1706 -0.4625 1.9872 36 1 2.5801 0.2358 2.3751 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722232338.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:50 Heat of formation + Delta-G solvation = -98.420516 kcal Electronic energy + Delta-G solvation = -19233.918807 eV Core-core repulsion = 16264.899770 eV Total energy + Delta-G solvation = -2969.019038 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.74916 -38.19189 -37.36569 -36.90887 -34.49548 -33.00762 -32.08691 -30.25475 -26.83057 -24.87131 -24.41840 -23.73647 -21.60214 -19.77762 -19.13633 -18.37925 -17.79920 -17.29490 -16.74629 -16.39783 -15.88110 -15.68948 -15.28419 -14.72111 -14.53873 -14.43417 -14.02307 -13.96982 -13.46194 -13.31627 -13.16827 -13.10846 -12.99686 -12.95366 -12.40841 -12.31481 -12.27771 -12.22968 -11.93463 -11.78336 -11.67315 -11.26897 -10.76067 -9.71835 -9.39769 -8.27098 -6.32663 -0.74121 1.38456 1.43092 1.50966 1.76002 2.37383 2.93317 3.05457 3.09198 3.25200 3.38916 3.67217 3.84993 4.02400 4.06079 4.20729 4.33104 4.50154 4.66619 4.68728 4.73648 4.78145 4.83899 4.89711 4.91386 5.04388 5.08395 5.22385 5.35525 5.51346 5.75552 5.89362 6.32968 6.47772 6.70374 7.29869 8.91049 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.023032 B = 0.007953 C = 0.006728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.390191 B = 3519.916183 C = 4160.609118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.994 5.994 3 C 0.234 3.766 4 C -0.541 4.541 5 H 0.021 0.979 6 C 0.003 3.997 7 N -0.953 5.953 8 Si 0.943 3.057 9 H -0.269 1.269 10 H -0.281 1.281 11 H -0.221 1.221 12 S 2.596 3.404 13 O -0.999 6.999 14 O -0.989 6.989 15 C -0.596 4.596 16 H 0.166 0.834 17 C -0.120 4.120 18 C -0.138 4.138 19 C 0.046 3.954 20 N -0.672 5.672 21 C 0.071 3.929 22 H 0.089 0.911 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.060 0.940 26 H 0.040 0.960 27 H 0.267 0.733 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.102 0.898 34 H 0.355 0.645 35 H 0.072 0.928 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.907 -11.307 19.671 22.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.832 5.832 3 C 0.109 3.891 4 C -0.580 4.580 5 H 0.039 0.961 6 C -0.194 4.194 7 N -0.593 5.593 8 Si 0.764 3.236 9 H -0.194 1.194 10 H -0.206 1.206 11 H -0.144 1.144 12 S 2.694 3.306 13 O -0.989 6.989 14 O -0.979 6.979 15 C -0.712 4.712 16 H 0.184 0.816 17 C -0.160 4.160 18 C -0.178 4.178 19 C -0.083 4.083 20 N -0.302 5.302 21 C -0.061 4.061 22 H 0.108 0.892 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.078 0.922 26 H 0.058 0.942 27 H 0.076 0.924 28 H 0.103 0.897 29 H 0.088 0.912 30 H 0.111 0.889 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.120 0.880 34 H 0.175 0.825 35 H 0.091 0.909 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.107 -11.150 18.857 21.935 hybrid contribution -0.341 0.010 -0.512 0.615 sum -1.448 -11.141 18.345 21.512 Atomic orbital electron populations 1.21632 0.77989 1.03346 1.03104 1.56985 1.15495 1.20870 1.89854 1.19282 0.92188 0.82425 0.95201 1.21737 1.36115 1.06556 0.93627 0.96087 1.25996 0.95844 0.98695 0.98865 1.70092 1.44340 1.22900 1.21990 0.85799 0.79989 0.77491 0.80316 1.19375 1.20625 1.14374 1.05328 0.73114 0.72999 0.79202 1.93464 1.65371 1.64321 1.75792 1.93558 1.46042 1.83054 1.75276 1.31003 1.10477 1.07113 1.22575 0.81617 1.21579 0.98941 0.94058 1.01372 1.22141 1.03022 1.00217 0.92445 1.22226 0.96365 0.87525 1.02188 1.60624 1.20278 1.39269 1.09980 1.21939 1.00506 0.94146 0.89498 0.89250 0.91492 0.91443 0.92240 0.94212 0.92448 0.89711 0.91177 0.88891 0.89884 0.91543 0.87970 0.82535 0.90934 0.88460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.66 10.66 127.77 1.36 4.03 16 2 N -0.99 -38.50 2.73 -543.22 -1.48 -39.99 16 3 C 0.23 10.50 2.98 85.63 0.26 10.76 16 4 C -0.54 -31.97 9.94 25.60 0.25 -31.71 16 5 H 0.02 1.42 8.06 -2.91 -0.02 1.40 16 6 C 0.00 0.18 5.47 84.65 0.46 0.65 16 7 N -0.95 -61.47 13.96 21.45 0.30 -61.17 16 8 Si 0.94 42.75 27.47 68.60 1.88 44.64 16 9 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.22 -8.49 6.54 99.48 0.65 -7.84 16 12 S 2.60 96.77 4.83 -56.49 -0.27 96.50 16 13 O -1.00 -41.07 16.57 -127.65 -2.12 -43.18 16 14 O -0.99 -47.04 16.98 -127.65 -2.17 -49.20 16 15 C -0.60 -13.95 3.02 30.64 0.09 -13.86 16 16 H 0.17 2.76 8.14 -2.39 -0.02 2.74 16 17 C -0.12 -2.48 5.29 30.67 0.16 -2.32 16 18 C -0.14 -1.90 6.08 30.65 0.19 -1.71 16 19 C 0.05 0.70 6.55 86.33 0.57 1.27 16 20 N -0.67 -12.29 6.87 -514.01 -3.53 -15.81 16 21 C 0.07 1.69 4.88 86.32 0.42 2.12 16 22 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 23 H 0.07 2.28 8.07 -2.39 -0.02 2.26 16 24 H 0.07 2.14 6.91 -2.39 -0.02 2.13 16 25 H 0.06 2.39 7.17 -2.39 -0.02 2.37 16 26 H 0.04 1.74 6.07 -2.38 -0.01 1.72 16 27 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 28 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.36 4.84 8.86 -89.69 -0.79 4.05 16 35 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 36 H 0.10 2.32 6.67 -2.38 -0.02 2.30 16 Total: -1.00 -81.16 298.43 -3.41 -84.56 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 0.22 Total: 14.45 kcal Atomic # 6 Polarization: -34.55 SS G_CDS: 3.76 Total: -30.79 kcal Atomic # 7 Polarization: -112.26 SS G_CDS: -4.72 Total: -116.97 kcal Atomic # 8 Polarization: -88.11 SS G_CDS: -4.28 Total: -92.39 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 1.88 Total: 44.64 kcal Atomic # 16 Polarization: 96.77 SS G_CDS: -0.27 Total: 96.50 kcal Total: -81.16 -3.41 -84.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722232338.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.860 kcal (2) G-P(sol) polarization free energy of solvation -81.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds