Wall clock time and date at job start Mon Mar 30 2020 05:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46499 * 119.99880 * 2 1 4 4 C 1.50699 * 109.47062 * 275.00373 * 3 2 1 5 5 H 1.07993 * 120.00537 * 359.97438 * 4 3 2 6 6 C 1.37877 * 119.99778 * 179.97438 * 4 3 2 7 7 N 1.31517 * 120.00292 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99948 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47243 * 60.00411 * 8 6 4 10 10 H 1.48509 * 109.47139 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47409 * 299.99827 * 8 6 4 12 12 S 1.65599 * 120.00158 * 180.02562 * 2 1 3 13 13 O 1.42100 * 104.27503 * 333.92334 * 12 2 1 14 14 O 1.42101 * 104.27623 * 206.06950 * 12 2 1 15 15 C 1.81396 * 104.45213 * 89.99660 * 12 2 1 16 16 C 1.52994 * 109.47179 * 179.97438 * 15 12 2 17 17 H 1.09004 * 110.37002 * 304.10314 * 16 15 12 18 18 C 1.54388 * 110.51120 * 181.68819 * 16 15 12 19 19 C 1.54268 * 105.05642 * 217.31758 * 18 16 15 20 20 C 1.54372 * 105.06240 * 359.97438 * 19 18 16 21 21 N 1.48558 * 110.41235 * 66.45481 * 16 15 12 22 22 H 1.09003 * 109.47052 * 269.99274 * 1 2 3 23 23 H 1.08992 * 109.47372 * 29.99971 * 1 2 3 24 24 H 1.09008 * 109.47146 * 149.99909 * 1 2 3 25 25 H 1.09001 * 109.47102 * 35.00374 * 3 2 1 26 26 H 1.09000 * 109.47285 * 155.00192 * 3 2 1 27 27 H 0.97002 * 120.00276 * 179.97438 * 7 6 4 28 28 H 1.09009 * 109.47110 * 60.00084 * 15 12 2 29 29 H 1.08999 * 109.47213 * 300.00461 * 15 12 2 30 30 H 1.09001 * 110.32370 * 336.21056 * 18 16 15 31 31 H 1.08994 * 110.32343 * 98.32376 * 18 16 15 32 32 H 1.09003 * 110.32138 * 118.89762 * 19 18 16 33 33 H 1.08998 * 110.31955 * 240.99784 * 19 18 16 34 34 H 1.08998 * 110.41580 * 265.07256 * 20 19 18 35 35 H 1.09002 * 110.41063 * 142.62725 * 20 19 18 36 36 H 1.00901 * 110.99875 * 277.93389 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3413 1.7657 -1.4154 5 1 1.9288 1.1936 -2.2332 6 6 2.9996 2.9509 -1.6663 7 7 3.5015 3.6480 -0.6704 8 14 3.1785 3.5667 -3.4208 9 1 1.8323 3.7717 -4.0132 10 1 3.9199 4.8535 -3.4207 11 1 3.9252 2.5649 -4.2233 12 16 2.2931 -1.4341 -0.0006 13 8 1.3971 -2.3563 0.6043 14 8 3.5396 -1.1193 0.6047 15 6 2.5193 -1.8254 -1.7574 16 6 3.2820 -3.1449 -1.8918 17 1 4.2289 -3.0923 -1.3544 18 6 3.5250 -3.4801 -3.3792 19 6 3.3661 -5.0116 -3.4759 20 6 3.0411 -5.4728 -2.0390 21 7 2.4596 -4.2728 -1.3834 22 1 -0.3633 -0.0001 1.0277 23 1 -0.3634 0.8899 -0.5138 24 1 -0.3634 -0.8900 -0.5139 25 1 1.6501 2.0043 0.5895 26 1 3.1858 1.1177 0.4343 27 1 3.9650 4.4817 -0.8469 28 1 3.0867 -1.0278 -2.2372 29 1 1.5451 -1.9178 -2.2375 30 1 2.7846 -2.9824 -4.0053 31 1 4.5312 -3.1830 -3.6747 32 1 2.5477 -5.2654 -4.1497 33 1 4.2944 -5.4674 -3.8204 34 1 3.9503 -5.7845 -1.5250 35 1 2.3151 -6.2856 -2.0557 36 1 2.5237 -4.3430 -0.3789 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722233093.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:37 Heat of formation + Delta-G solvation = -71.970232 kcal Electronic energy + Delta-G solvation = -18828.153623 eV Core-core repulsion = 15860.281556 eV Total energy + Delta-G solvation = -2967.872067 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.65243 -36.46323 -35.53709 -35.20241 -32.50437 -31.56743 -30.35914 -27.77324 -25.87708 -25.03524 -22.28320 -21.31300 -20.36532 -18.15117 -17.21922 -16.66943 -16.44031 -15.90600 -15.60053 -14.94854 -14.64403 -14.31150 -13.44005 -13.20873 -12.99685 -12.39185 -12.31365 -12.24358 -12.16541 -11.93096 -11.80724 -11.64111 -11.41922 -11.27046 -11.15804 -11.09696 -10.77007 -10.62705 -10.48523 -10.22528 -9.92894 -9.74071 -8.74238 -8.52238 -7.96827 -6.13622 -4.21889 0.96229 3.23656 3.29276 3.29843 3.40888 4.00418 4.31463 4.39078 4.56417 4.65263 4.84571 4.91699 5.06285 5.17646 5.21335 5.42043 5.48231 5.63501 5.66192 5.72553 5.80018 5.93148 6.01123 6.13512 6.20615 6.33227 6.57171 6.61933 7.15935 7.34982 7.42093 7.64729 7.82963 8.12067 8.82858 9.44668 10.94046 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.021277 B = 0.007107 C = 0.005873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.633206 B = 3938.813474 C = 4766.271150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.990 5.990 3 C 0.241 3.759 4 C -0.549 4.549 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.894 3.106 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 S 2.608 3.392 13 O -0.969 6.969 14 O -0.961 6.961 15 C -0.618 4.618 16 C 0.074 3.926 17 H 0.063 0.937 18 C -0.113 4.113 19 C -0.125 4.125 20 C 0.035 3.965 21 N -0.667 5.667 22 H 0.045 0.955 23 H 0.072 0.928 24 H 0.055 0.945 25 H 0.039 0.961 26 H 0.054 0.946 27 H 0.266 0.734 28 H 0.144 0.856 29 H 0.133 0.867 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.042 0.958 35 H 0.084 0.916 36 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.579 -13.538 -4.413 14.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.829 5.829 3 C 0.119 3.881 4 C -0.588 4.588 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 S 2.701 3.299 13 O -0.959 6.959 14 O -0.952 6.952 15 C -0.747 4.747 16 C -0.037 4.037 17 H 0.081 0.919 18 C -0.152 4.152 19 C -0.163 4.163 20 C -0.094 4.094 21 N -0.298 5.298 22 H 0.064 0.936 23 H 0.091 0.909 24 H 0.074 0.926 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.162 0.838 29 H 0.152 0.848 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.102 0.898 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.821 -13.713 -4.014 14.404 hybrid contribution 0.843 0.659 -1.279 1.667 sum -0.977 -13.054 -5.293 14.120 Atomic orbital electron populations 1.21239 0.79985 1.02040 1.00823 1.57277 1.14048 1.22757 1.88860 1.19247 0.92553 0.78952 0.97322 1.21565 1.37010 1.07212 0.93037 0.92042 1.24970 0.95093 0.96466 0.97319 1.69926 1.36448 1.15118 1.31023 0.86625 0.78333 0.78271 0.84596 1.20123 1.21067 1.20103 1.04891 0.74140 0.73414 0.77491 1.93527 1.64759 1.63776 1.73863 1.93562 1.44775 1.83172 1.73663 1.30694 1.10104 1.04440 1.29428 1.22127 0.94053 0.89570 0.97932 0.91940 1.22306 1.02440 0.95734 0.94693 1.22316 1.01678 0.95664 0.96681 1.22916 0.98123 0.93739 0.94638 1.63714 1.51805 1.02367 1.11935 0.93644 0.90930 0.92642 0.94275 0.92802 0.92431 0.83757 0.84836 0.90339 0.90845 0.90913 0.91314 0.93938 0.89813 0.84001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.86 10.22 59.85 0.61 2.47 16 2 N -0.99 -20.76 3.10 -123.05 -0.38 -21.14 16 3 C 0.24 6.08 5.39 -5.19 -0.03 6.05 16 4 C -0.55 -14.36 9.38 -34.44 -0.32 -14.69 16 5 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 6 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -25.37 13.29 55.43 0.74 -24.63 16 8 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 9 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 S 2.61 50.84 5.16 -107.50 -0.56 50.28 16 13 O -0.97 -19.21 15.95 -57.54 -0.92 -20.13 16 14 O -0.96 -22.08 16.53 -57.54 -0.95 -23.03 16 15 C -0.62 -9.99 5.78 37.15 0.21 -9.77 16 16 C 0.07 1.07 3.14 -66.07 -0.21 0.86 16 17 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 18 C -0.11 -1.35 6.55 -25.34 -0.17 -1.51 16 19 C -0.13 -1.25 7.00 -25.35 -0.18 -1.43 16 20 C 0.04 0.38 7.47 -2.17 -0.02 0.36 16 21 N -0.67 -9.21 6.89 -102.73 -0.71 -9.92 16 22 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 23 H 0.07 1.25 8.07 -51.93 -0.42 0.83 16 24 H 0.05 0.84 7.79 -51.92 -0.40 0.44 16 25 H 0.04 1.03 8.11 -51.93 -0.42 0.60 16 26 H 0.05 1.48 6.82 -51.93 -0.35 1.13 16 27 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.14 2.40 8.14 -51.92 -0.42 1.98 16 29 H 0.13 1.98 8.14 -51.92 -0.42 1.56 16 30 H 0.08 0.94 7.86 -51.93 -0.41 0.53 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.34 4.80 7.93 -39.29 -0.31 4.49 16 LS Contribution 308.14 15.07 4.64 4.64 Total: -1.00 -31.68 308.14 -9.01 -40.69 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -5.67 Total: 3.75 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: -0.19 Total: -16.00 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: -0.35 Total: -55.69 kcal Atomic # 8 Polarization: -41.29 SS G_CDS: -1.87 Total: -43.15 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: 50.84 SS G_CDS: -0.56 Total: 50.28 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.68 -9.01 -40.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722233093.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.279 kcal (2) G-P(sol) polarization free energy of solvation -31.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds