Wall clock time and date at job start Mon Mar 30 2020 04:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47245 * 2 1 4 4 N 1.46496 * 109.47561 * 120.00542 * 2 1 3 5 5 C 1.46507 * 119.99447 * 299.99629 * 4 2 1 6 6 C 1.50701 * 109.47043 * 274.99923 * 5 4 2 7 7 H 1.07996 * 119.99712 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99453 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99353 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 120.00568 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.46631 * 90.00218 * 10 8 6 12 12 H 1.48495 * 109.47235 * 210.00483 * 10 8 6 13 13 H 1.48502 * 109.47020 * 330.00497 * 10 8 6 14 14 S 1.65600 * 120.00547 * 119.99736 * 4 2 1 15 15 O 1.42103 * 104.27425 * 333.92664 * 14 4 2 16 16 O 1.42098 * 104.27886 * 206.07310 * 14 4 2 17 17 C 1.81393 * 104.44913 * 90.00008 * 14 4 2 18 18 C 1.53515 * 114.16962 * 180.02562 * 17 14 4 19 19 N 1.47481 * 87.93334 * 220.32590 * 18 17 14 20 20 C 1.47488 * 87.83530 * 27.00963 * 19 18 17 21 21 H 1.09008 * 109.46934 * 299.99864 * 1 2 3 22 22 H 1.09001 * 109.47426 * 59.99938 * 1 2 3 23 23 H 1.09005 * 109.47020 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.46934 * 240.00136 * 2 1 3 25 25 H 1.08997 * 109.47448 * 180.02562 * 3 2 1 26 26 H 1.09001 * 109.46959 * 300.00348 * 3 2 1 27 27 H 1.09000 * 109.47307 * 60.00404 * 3 2 1 28 28 H 1.08995 * 109.47219 * 35.00057 * 5 4 2 29 29 H 1.09002 * 109.46686 * 154.99818 * 5 4 2 30 30 H 0.97002 * 119.99775 * 179.97438 * 9 8 6 31 31 H 1.09002 * 113.38764 * 313.07930 * 17 14 4 32 32 H 1.09004 * 113.47747 * 105.56495 * 18 17 14 33 33 H 1.08995 * 113.53124 * 335.10556 * 18 17 14 34 34 H 1.00901 * 110.99857 * 138.69928 * 19 18 17 35 35 H 1.08996 * 113.47304 * 87.75121 * 20 19 18 36 36 H 1.08997 * 113.47652 * 218.22256 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 1.6645 -0.1901 2.5267 6 6 2.6340 0.8905 2.9311 7 1 3.4334 1.1761 2.2635 8 6 2.5002 1.5144 4.1533 9 7 3.3459 2.4578 4.5060 10 14 1.1170 1.0208 5.3077 11 1 1.5815 -0.0743 6.1967 12 1 0.7176 2.1907 6.1304 13 1 -0.0475 0.5534 4.5135 14 16 2.9705 -2.0371 1.0441 15 8 2.6121 -2.5788 -0.2199 16 8 2.7433 -2.7642 2.2436 17 6 4.6649 -1.3910 1.0025 18 6 5.7464 -2.4715 0.8630 19 7 6.5549 -1.7123 1.8351 20 6 5.2933 -1.1849 2.3879 21 1 -0.3633 0.5139 0.8901 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8901 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 0.6541 0.2179 2.5045 29 1 1.7106 -1.0075 3.2464 30 1 3.2517 2.8970 5.3657 31 1 4.7891 -0.5456 0.3256 32 1 6.1910 -2.5151 -0.1313 33 1 5.4338 -3.4497 1.2281 34 1 7.0064 -2.3313 2.4916 35 1 4.8589 -1.8194 3.1603 36 1 5.3538 -0.1382 2.6859 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722241783.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:58 Heat of formation + Delta-G solvation = -31.649415 kcal Electronic energy + Delta-G solvation = -19592.621349 eV Core-core repulsion = 16626.497724 eV Total energy + Delta-G solvation = -2966.123625 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.19962 -37.05135 -36.65717 -35.49098 -32.76309 -30.88487 -27.97855 -27.49568 -26.61801 -25.74289 -22.44994 -20.77631 -19.92081 -18.31321 -17.64730 -17.07705 -16.82703 -15.84192 -15.23485 -14.44722 -14.23970 -13.89414 -13.66327 -13.46488 -12.97980 -12.74877 -12.54158 -12.09777 -12.06726 -11.69837 -11.60828 -11.59723 -11.38750 -11.17896 -11.00917 -10.85326 -10.70286 -10.48635 -10.37647 -10.17436 -9.99018 -9.47566 -8.93600 -8.65433 -8.05694 -6.17376 -4.16780 0.77182 3.11843 3.25364 3.32554 3.35779 4.00228 4.22484 4.31785 4.33674 4.80105 4.94622 5.15715 5.27038 5.29633 5.44123 5.59947 5.63833 5.67068 5.91523 5.94139 6.03727 6.14032 6.24033 6.42610 6.43385 6.49801 6.66706 6.91175 7.04128 7.21693 7.28549 7.40834 7.55033 8.39579 8.86141 9.43752 10.94235 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.017447 B = 0.010633 C = 0.008306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.453128 B = 2632.561359 C = 3370.050480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.149 3.851 3 C -0.158 4.158 4 N -0.972 5.972 5 C 0.211 3.789 6 C -0.538 4.538 7 H 0.086 0.914 8 C 0.078 3.922 9 N -0.892 5.892 10 Si 0.865 3.135 11 H -0.273 1.273 12 H -0.286 1.286 13 H -0.264 1.264 14 S 2.614 3.386 15 O -0.973 6.973 16 O -0.957 6.957 17 C -0.625 4.625 18 C 0.030 3.970 19 N -0.618 5.618 20 C 0.047 3.953 21 H 0.065 0.935 22 H 0.059 0.941 23 H 0.052 0.948 24 H 0.083 0.917 25 H 0.053 0.947 26 H 0.046 0.954 27 H 0.086 0.914 28 H 0.039 0.961 29 H 0.043 0.957 30 H 0.265 0.735 31 H 0.156 0.844 32 H 0.097 0.903 33 H 0.068 0.932 34 H 0.319 0.681 35 H 0.084 0.916 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.245 -6.079 -6.988 9.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.042 3.958 3 C -0.216 4.216 4 N -0.810 5.810 5 C 0.088 3.912 6 C -0.577 4.577 7 H 0.104 0.896 8 C -0.126 4.126 9 N -0.530 5.530 10 Si 0.692 3.308 11 H -0.199 1.199 12 H -0.212 1.212 13 H -0.189 1.189 14 S 2.707 3.293 15 O -0.964 6.964 16 O -0.947 6.947 17 C -0.734 4.734 18 C -0.102 4.102 19 N -0.242 5.242 20 C -0.083 4.083 21 H 0.084 0.916 22 H 0.078 0.922 23 H 0.071 0.929 24 H 0.101 0.899 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.105 0.895 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.174 0.826 32 H 0.116 0.884 33 H 0.086 0.914 34 H 0.131 0.869 35 H 0.103 0.897 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.410 -6.183 -7.300 9.576 hybrid contribution -0.651 -0.196 1.244 1.417 sum -0.241 -6.379 -6.056 8.799 Atomic orbital electron populations 1.22088 0.95564 1.01746 1.02111 1.20694 0.94539 0.94013 0.86533 1.22215 1.01245 0.95701 1.02461 1.57184 1.63625 1.47180 1.12990 1.19605 0.97623 0.95745 0.78244 1.21505 1.14297 1.18959 1.02941 0.89639 1.24824 0.95629 0.94580 0.97549 1.69886 1.36447 1.24662 1.22019 0.87020 0.83539 0.78481 0.81798 1.19867 1.21202 1.18860 1.04700 0.76451 0.74539 0.73651 1.93522 1.81551 1.77411 1.43870 1.93547 1.83734 1.70052 1.47411 1.32359 1.22099 1.10671 1.08241 1.23168 0.92719 0.93735 1.00577 1.67491 1.16867 1.26603 1.13287 1.23205 0.88197 1.05412 0.91502 0.91643 0.92221 0.92862 0.89851 0.92807 0.93533 0.89529 0.94269 0.93874 0.92543 0.82614 0.88445 0.91386 0.86886 0.89743 0.86409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 9.16 37.16 0.34 -2.04 16 2 C 0.15 2.49 3.19 -67.94 -0.22 2.27 16 3 C -0.16 -2.60 8.20 37.15 0.30 -2.30 16 4 N -0.97 -18.59 2.66 -108.57 -0.29 -18.88 16 5 C 0.21 4.63 4.05 -5.19 -0.02 4.61 16 6 C -0.54 -13.10 8.08 -34.44 -0.28 -13.38 16 7 H 0.09 2.18 7.19 -52.49 -0.38 1.80 16 8 C 0.08 2.02 5.47 -17.82 -0.10 1.92 16 9 N -0.89 -24.90 13.96 55.43 0.77 -24.13 16 10 Si 0.86 20.08 27.47 -169.99 -4.67 15.41 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.26 -5.88 6.54 56.52 0.37 -5.51 16 14 S 2.61 47.96 5.45 -107.50 -0.59 47.37 16 15 O -0.97 -18.74 16.57 -57.54 -0.95 -19.69 16 16 O -0.96 -19.99 15.67 -57.54 -0.90 -20.89 16 17 C -0.63 -10.06 4.85 -26.20 -0.13 -10.19 16 18 C 0.03 0.42 8.23 -7.54 -0.06 0.36 16 19 N -0.62 -9.16 8.71 -122.64 -1.07 -10.23 16 20 C 0.05 0.81 8.19 -7.53 -0.06 0.75 16 21 H 0.06 1.05 6.69 -51.92 -0.35 0.70 16 22 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.08 1.30 6.87 -51.92 -0.36 0.95 16 25 H 0.05 0.90 7.93 -51.93 -0.41 0.49 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.09 1.66 6.65 -51.93 -0.35 1.31 16 28 H 0.04 0.86 5.51 -51.93 -0.29 0.57 16 29 H 0.04 0.99 6.24 -51.93 -0.32 0.67 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 31 H 0.16 2.39 8.14 -51.93 -0.42 1.97 16 32 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.07 0.84 8.11 -51.93 -0.42 0.42 16 34 H 0.32 3.99 8.91 -39.29 -0.35 3.64 16 35 H 0.08 1.46 7.40 -51.93 -0.38 1.08 16 36 H 0.12 2.30 8.01 -51.93 -0.42 1.89 16 LS Contribution 299.21 15.07 4.51 4.51 Total: -1.00 -29.71 299.21 -8.71 -38.41 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -5.30 Total: 6.11 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: -0.22 Total: -17.99 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: -0.58 Total: -53.24 kcal Atomic # 8 Polarization: -38.72 SS G_CDS: -1.85 Total: -40.58 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -4.67 Total: 15.41 kcal Atomic # 16 Polarization: 47.96 SS G_CDS: -0.59 Total: 47.37 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.71 -8.71 -38.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722241783.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.764 kcal (2) G-P(sol) polarization free energy of solvation -29.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds