Wall clock time and date at job start Mon Mar 30 2020 04:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47245 * 2 1 4 4 N 1.46496 * 109.47561 * 120.00542 * 2 1 3 5 5 C 1.46507 * 119.99447 * 299.99629 * 4 2 1 6 6 C 1.50701 * 109.47043 * 274.99923 * 5 4 2 7 7 H 1.07996 * 119.99712 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99453 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99353 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 120.00568 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.46631 * 90.00218 * 10 8 6 12 12 H 1.48495 * 109.47235 * 210.00483 * 10 8 6 13 13 H 1.48502 * 109.47020 * 330.00497 * 10 8 6 14 14 S 1.65600 * 120.00547 * 119.99736 * 4 2 1 15 15 O 1.42103 * 104.27425 * 333.92664 * 14 4 2 16 16 O 1.42098 * 104.27886 * 206.07310 * 14 4 2 17 17 C 1.81393 * 104.44913 * 90.00008 * 14 4 2 18 18 C 1.53515 * 114.16962 * 180.02562 * 17 14 4 19 19 N 1.47481 * 87.93334 * 220.32590 * 18 17 14 20 20 C 1.47488 * 87.83530 * 27.00963 * 19 18 17 21 21 H 1.09008 * 109.46934 * 299.99864 * 1 2 3 22 22 H 1.09001 * 109.47426 * 59.99938 * 1 2 3 23 23 H 1.09005 * 109.47020 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.46934 * 240.00136 * 2 1 3 25 25 H 1.08997 * 109.47448 * 180.02562 * 3 2 1 26 26 H 1.09001 * 109.46959 * 300.00348 * 3 2 1 27 27 H 1.09000 * 109.47307 * 60.00404 * 3 2 1 28 28 H 1.08995 * 109.47219 * 35.00057 * 5 4 2 29 29 H 1.09002 * 109.46686 * 154.99818 * 5 4 2 30 30 H 0.97002 * 119.99775 * 179.97438 * 9 8 6 31 31 H 1.09002 * 113.38764 * 313.07930 * 17 14 4 32 32 H 1.09004 * 113.47747 * 105.56495 * 18 17 14 33 33 H 1.08995 * 113.53124 * 335.10556 * 18 17 14 34 34 H 1.00901 * 110.99857 * 138.69928 * 19 18 17 35 35 H 1.08996 * 113.47304 * 87.75121 * 20 19 18 36 36 H 1.08997 * 113.47652 * 218.22256 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 1.6645 -0.1901 2.5267 6 6 2.6340 0.8905 2.9311 7 1 3.4334 1.1761 2.2635 8 6 2.5002 1.5144 4.1533 9 7 3.3459 2.4578 4.5060 10 14 1.1170 1.0208 5.3077 11 1 1.5815 -0.0743 6.1967 12 1 0.7176 2.1907 6.1304 13 1 -0.0475 0.5534 4.5135 14 16 2.9705 -2.0371 1.0441 15 8 2.6121 -2.5788 -0.2199 16 8 2.7433 -2.7642 2.2436 17 6 4.6649 -1.3910 1.0025 18 6 5.7464 -2.4715 0.8630 19 7 6.5549 -1.7123 1.8351 20 6 5.2933 -1.1849 2.3879 21 1 -0.3633 0.5139 0.8901 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8901 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 0.6541 0.2179 2.5045 29 1 1.7106 -1.0075 3.2464 30 1 3.2517 2.8970 5.3657 31 1 4.7891 -0.5456 0.3256 32 1 6.1910 -2.5151 -0.1313 33 1 5.4338 -3.4497 1.2281 34 1 7.0064 -2.3313 2.4916 35 1 4.8589 -1.8194 3.1603 36 1 5.3538 -0.1382 2.6859 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722241783.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:57 Heat of formation + Delta-G solvation = -55.655812 kcal Electronic energy + Delta-G solvation = -19593.662345 eV Core-core repulsion = 16626.497724 eV Total energy + Delta-G solvation = -2967.164621 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.45584 -38.52293 -38.19652 -37.02681 -34.67270 -32.44675 -29.27318 -29.26569 -27.89070 -26.98527 -24.25555 -22.14094 -21.29197 -19.72465 -19.17120 -18.79123 -18.43682 -17.26053 -16.67808 -16.18870 -15.69126 -15.36336 -15.00497 -14.80391 -14.54747 -14.37118 -13.81844 -13.74371 -13.64042 -13.25283 -13.06229 -13.02826 -12.88146 -12.66461 -12.56022 -12.39504 -12.14946 -11.98381 -11.86283 -11.74520 -11.47491 -11.28895 -10.67265 -10.17326 -9.62358 -8.19372 -6.19644 -0.68065 1.38379 1.43371 1.48923 1.67978 2.40303 2.65055 2.88897 2.96386 3.15170 3.45896 3.75996 3.89135 4.09312 4.14846 4.35168 4.36723 4.51411 4.55697 4.69255 4.77981 4.92822 4.94139 4.98292 5.03392 5.09822 5.16666 5.31060 5.53681 5.58030 5.75375 5.93698 6.17170 6.41341 6.85756 7.42760 8.94686 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.017447 B = 0.010633 C = 0.008306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.453128 B = 2632.561359 C = 3370.050480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.139 3.861 3 C -0.151 4.151 4 N -0.979 5.979 5 C 0.218 3.782 6 C -0.515 4.515 7 H 0.068 0.932 8 C 0.027 3.973 9 N -0.936 5.936 10 Si 0.910 3.090 11 H -0.275 1.275 12 H -0.287 1.287 13 H -0.247 1.247 14 S 2.620 3.380 15 O -0.980 6.980 16 O -0.985 6.985 17 C -0.616 4.616 18 C 0.033 3.967 19 N -0.619 5.619 20 C 0.044 3.956 21 H 0.052 0.948 22 H 0.089 0.911 23 H 0.052 0.948 24 H 0.100 0.900 25 H 0.044 0.956 26 H 0.077 0.923 27 H 0.055 0.945 28 H 0.045 0.955 29 H 0.034 0.966 30 H 0.263 0.737 31 H 0.165 0.835 32 H 0.124 0.876 33 H 0.086 0.914 34 H 0.335 0.665 35 H 0.079 0.921 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.071 -7.087 -8.409 10.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.034 3.966 3 C -0.210 4.210 4 N -0.816 5.816 5 C 0.094 3.906 6 C -0.555 4.555 7 H 0.086 0.914 8 C -0.172 4.172 9 N -0.576 5.576 10 Si 0.735 3.265 11 H -0.200 1.200 12 H -0.213 1.213 13 H -0.171 1.171 14 S 2.715 3.285 15 O -0.971 6.971 16 O -0.976 6.976 17 C -0.727 4.727 18 C -0.099 4.099 19 N -0.245 5.245 20 C -0.087 4.087 21 H 0.071 0.929 22 H 0.108 0.892 23 H 0.071 0.929 24 H 0.118 0.882 25 H 0.064 0.936 26 H 0.096 0.904 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.183 0.817 32 H 0.142 0.858 33 H 0.104 0.896 34 H 0.148 0.852 35 H 0.098 0.902 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.054 -7.218 -8.743 11.338 hybrid contribution -0.467 0.100 1.589 1.659 sum -0.412 -7.118 -7.154 10.100 Atomic orbital electron populations 1.22096 0.94297 1.02022 1.03018 1.20983 0.95726 0.93904 0.86027 1.22125 1.00674 0.95709 1.02453 1.57172 1.64551 1.47301 1.12618 1.19338 0.97115 0.94529 0.79638 1.21646 1.13542 1.18344 1.01944 0.91428 1.25455 0.97582 0.94896 0.99236 1.70001 1.38531 1.26516 1.22589 0.86274 0.81916 0.77962 0.80312 1.20049 1.21325 1.17110 1.04439 0.77039 0.74100 0.72877 1.93506 1.82183 1.77600 1.43767 1.93508 1.84573 1.70996 1.48512 1.32230 1.20577 1.12036 1.07863 1.23375 0.91245 0.93507 1.01748 1.67435 1.15781 1.27624 1.13659 1.23050 0.89977 1.03691 0.92029 0.92851 0.89246 0.92881 0.88229 0.93643 0.90438 0.92548 0.93758 0.94755 0.92789 0.81740 0.85829 0.89571 0.85165 0.90244 0.89432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.38 9.16 71.98 0.66 -3.72 16 2 C 0.14 4.40 3.19 44.99 0.14 4.54 16 3 C -0.15 -4.79 8.20 71.98 0.59 -4.20 16 4 N -0.98 -36.51 2.66 -497.41 -1.32 -37.83 16 5 C 0.22 9.48 4.05 85.63 0.35 9.83 16 6 C -0.52 -25.37 8.08 25.60 0.21 -25.16 16 7 H 0.07 3.53 7.19 -2.91 -0.02 3.51 16 8 C 0.03 1.44 5.47 84.65 0.46 1.90 16 9 N -0.94 -53.50 13.96 21.45 0.30 -53.20 16 10 Si 0.91 41.28 27.47 68.60 1.88 43.16 16 11 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 12 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 13 H -0.25 -10.45 6.54 99.48 0.65 -9.80 16 14 S 2.62 92.78 5.45 -56.49 -0.31 92.47 16 15 O -0.98 -35.70 16.57 -127.65 -2.12 -37.82 16 16 O -0.99 -40.43 15.67 -127.65 -2.00 -42.43 16 17 C -0.62 -18.93 4.85 30.94 0.15 -18.78 16 18 C 0.03 0.82 8.23 83.58 0.69 1.51 16 19 N -0.62 -17.25 8.71 -541.94 -4.72 -21.97 16 20 C 0.04 1.49 8.19 83.58 0.68 2.17 16 21 H 0.05 1.62 6.69 -2.38 -0.02 1.61 16 22 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 23 H 0.05 1.48 8.14 -2.38 -0.02 1.47 16 24 H 0.10 2.85 6.87 -2.38 -0.02 2.84 16 25 H 0.04 1.48 7.93 -2.39 -0.02 1.47 16 26 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.06 2.13 6.65 -2.39 -0.02 2.12 16 28 H 0.04 1.89 5.51 -2.39 -0.01 1.88 16 29 H 0.03 1.57 6.24 -2.39 -0.01 1.56 16 30 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 31 H 0.16 4.79 8.14 -2.39 -0.02 4.77 16 32 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.09 1.86 8.11 -2.39 -0.02 1.84 16 34 H 0.33 7.71 8.91 -89.69 -0.80 6.91 16 35 H 0.08 2.76 7.40 -2.39 -0.02 2.74 16 36 H 0.09 3.52 8.01 -2.39 -0.02 3.51 16 Total: -1.00 -63.14 299.21 -4.13 -67.26 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: 0.23 Total: 22.28 kcal Atomic # 6 Polarization: -35.85 SS G_CDS: 3.93 Total: -31.92 kcal Atomic # 7 Polarization: -107.25 SS G_CDS: -5.75 Total: -113.00 kcal Atomic # 8 Polarization: -76.14 SS G_CDS: -4.12 Total: -80.25 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 1.88 Total: 43.16 kcal Atomic # 16 Polarization: 92.78 SS G_CDS: -0.31 Total: 92.47 kcal Total: -63.14 -4.13 -67.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722241783.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.608 kcal (2) G-P(sol) polarization free energy of solvation -63.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds