Wall clock time and date at job start Mon Mar 30 2020 04:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47502 * 2 1 4 4 C 1.50697 * 109.47316 * 239.99492 * 2 1 3 5 5 H 1.08005 * 120.00707 * 239.99947 * 4 2 1 6 6 C 1.37876 * 119.99904 * 60.00370 * 4 2 1 7 7 N 1.31512 * 119.99937 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00207 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47357 * 89.99830 * 8 6 4 10 10 H 1.48506 * 109.47025 * 209.99829 * 8 6 4 11 11 H 1.48502 * 109.47260 * 329.99483 * 8 6 4 12 12 C 1.53003 * 109.47005 * 119.99745 * 2 1 3 13 13 N 1.46499 * 109.47166 * 299.99997 * 12 2 1 14 14 S 1.65605 * 119.99761 * 165.00041 * 13 12 2 15 15 O 1.42101 * 104.27492 * 308.92543 * 14 13 12 16 16 O 1.42102 * 104.27119 * 181.07069 * 14 13 12 17 17 C 1.81396 * 104.45194 * 64.99981 * 14 13 12 18 18 C 1.53506 * 114.17242 * 184.99607 * 17 14 13 19 19 N 1.47481 * 87.93471 * 139.67134 * 18 17 14 20 20 C 1.47488 * 87.83530 * 332.99146 * 19 18 17 21 21 H 1.08994 * 109.47276 * 300.00451 * 1 2 3 22 22 H 1.08997 * 109.46861 * 60.00040 * 1 2 3 23 23 H 1.09001 * 109.47270 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47874 * 180.02562 * 3 2 1 25 25 H 1.09007 * 109.47036 * 299.99836 * 3 2 1 26 26 H 1.08994 * 109.47668 * 59.99812 * 3 2 1 27 27 H 0.97001 * 120.00185 * 179.97438 * 7 6 4 28 28 H 1.09003 * 109.47386 * 179.97438 * 12 2 1 29 29 H 1.09001 * 109.46943 * 60.00000 * 12 2 1 30 30 H 0.96996 * 119.99930 * 344.99721 * 13 12 2 31 31 H 1.09007 * 113.38611 * 51.91777 * 17 14 13 32 32 H 1.09007 * 113.47650 * 24.90916 * 18 17 14 33 33 H 1.08997 * 113.53552 * 254.44637 * 18 17 14 34 34 H 1.00901 * 110.99857 * 84.68111 * 19 18 17 35 35 H 1.08997 * 113.47731 * 141.77388 * 20 19 18 36 36 H 1.09001 * 113.47471 * 272.24480 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3214 -1.1206 -4.0078 9 1 1.3428 -2.1618 -4.4117 10 1 2.4866 -0.1416 -5.1122 11 1 3.6294 -1.7585 -3.7121 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0306 2.4454 14 16 1.6255 -0.7781 3.9213 15 8 1.0209 -2.0453 3.7029 16 8 1.0523 0.1622 4.8194 17 6 3.4004 -0.9668 4.2447 18 6 3.7265 -1.7540 5.5216 19 7 4.8182 -2.4077 4.7760 20 6 4.0423 -2.1725 3.5440 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 3.1301 1.4425 -0.0005 25 1 1.6767 1.9563 -0.8901 26 1 1.6768 1.9564 0.8899 27 1 0.7089 1.1611 -3.4844 28 1 3.1299 -0.7216 1.2491 29 1 1.6766 -1.7489 1.2493 30 1 1.1850 0.8645 2.3729 31 1 3.9609 -0.0381 4.1377 32 1 2.9348 -2.4401 5.8228 33 1 4.0756 -1.1271 6.3421 34 1 5.6543 -1.8430 4.7901 35 1 4.6591 -1.8995 2.6878 36 1 3.3349 -2.9703 3.3175 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722244125.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:22 Heat of formation + Delta-G solvation = -35.912282 kcal Electronic energy + Delta-G solvation = -18910.444305 eV Core-core repulsion = 15944.135828 eV Total energy + Delta-G solvation = -2966.308477 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.78694 -37.07152 -36.74276 -35.75269 -33.24252 -30.56339 -28.01603 -26.24683 -25.71645 -25.53645 -24.53726 -21.34285 -19.17518 -18.88206 -17.66300 -16.96602 -16.74044 -15.80153 -15.64001 -14.84453 -14.25164 -13.95988 -13.53808 -13.50889 -13.09866 -13.09204 -12.83129 -12.27223 -11.93985 -11.88180 -11.75375 -11.49801 -11.25831 -11.12495 -10.95556 -10.72485 -10.66798 -10.41132 -10.19101 -9.67762 -9.35824 -9.13033 -8.81013 -8.68703 -8.38865 -6.03431 -4.14652 0.43587 2.92386 3.26195 3.33606 3.35677 3.54622 3.62747 4.03566 4.36811 4.49603 4.57658 5.00870 5.11398 5.23000 5.23360 5.33666 5.50323 5.73723 5.77765 6.13750 6.41512 6.47295 6.72984 6.88003 6.90051 6.97574 7.05748 7.33265 7.51110 7.57444 7.68140 8.01627 8.13424 8.37321 8.85755 9.51369 10.97667 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.029181 B = 0.005982 C = 0.005376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.306717 B = 4679.507899 C = 5207.081695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.063 3.937 3 C -0.132 4.132 4 C -0.509 4.509 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.892 3.108 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.275 1.275 12 C 0.127 3.873 13 N -1.107 6.107 14 S 2.616 3.384 15 O -0.951 6.951 16 O -0.970 6.970 17 C -0.688 4.688 18 C 0.048 3.952 19 N -0.637 5.637 20 C 0.049 3.951 21 H 0.010 0.990 22 H 0.083 0.917 23 H 0.027 0.973 24 H 0.026 0.974 25 H 0.085 0.915 26 H 0.008 0.992 27 H 0.260 0.740 28 H 0.049 0.951 29 H 0.067 0.933 30 H 0.416 0.584 31 H 0.154 0.846 32 H 0.106 0.894 33 H 0.088 0.912 34 H 0.342 0.658 35 H 0.092 0.908 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.944 -1.462 11.492 13.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.061 3.939 3 C -0.190 4.190 4 C -0.548 4.548 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.720 3.280 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.200 1.200 12 C 0.002 3.998 13 N -0.870 5.870 14 S 2.706 3.294 15 O -0.941 6.941 16 O -0.960 6.960 17 C -0.797 4.797 18 C -0.083 4.083 19 N -0.264 5.264 20 C -0.082 4.082 21 H 0.029 0.971 22 H 0.102 0.898 23 H 0.047 0.953 24 H 0.045 0.955 25 H 0.104 0.896 26 H 0.027 0.973 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.252 0.748 31 H 0.172 0.828 32 H 0.125 0.875 33 H 0.107 0.893 34 H 0.156 0.844 35 H 0.110 0.890 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 5.232 -2.657 12.078 13.428 hybrid contribution 0.891 1.280 -1.357 2.067 sum 6.123 -1.377 10.721 12.422 Atomic orbital electron populations 1.21812 0.97567 0.99373 1.00213 1.18254 0.93037 0.92541 0.90025 1.21836 0.98318 0.98555 1.00254 1.21008 1.31698 1.12122 0.90000 0.92426 1.24889 0.94857 0.94892 0.98859 1.69811 1.36488 1.22694 1.23237 0.86593 0.79240 0.79420 0.82702 1.20672 1.21316 1.19970 1.21662 0.96856 0.96233 0.85072 1.55474 1.78118 1.30555 1.22825 1.04778 0.76656 0.74434 0.73548 1.93601 1.71994 1.43815 1.84669 1.93559 1.75233 1.62481 1.64746 1.33515 1.29831 1.08523 1.07859 1.23111 0.96873 0.94964 0.93393 1.65528 1.03989 1.50932 1.05916 1.23267 0.97564 0.92820 0.94540 0.97113 0.89797 0.95335 0.95526 0.89593 0.97292 0.92977 0.93298 0.91441 0.74780 0.82764 0.87540 0.89349 0.84361 0.88970 0.86254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.08 37.15 0.30 -2.75 16 2 C 0.06 1.42 0.51 -155.67 -0.08 1.34 16 3 C -0.13 -2.87 8.08 37.16 0.30 -2.57 16 4 C -0.51 -12.79 8.01 -34.44 -0.28 -13.06 16 5 H 0.06 1.42 7.74 -52.48 -0.41 1.01 16 6 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.88 -23.31 9.35 55.43 0.52 -22.79 16 8 Si 0.89 20.19 29.54 -169.99 -5.02 15.17 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 12 C 0.13 2.36 4.82 -4.04 -0.02 2.34 16 13 N -1.11 -18.05 5.22 -10.61 -0.06 -18.11 16 14 S 2.62 38.82 5.46 -107.50 -0.59 38.23 16 15 O -0.95 -16.94 16.75 -57.54 -0.96 -17.90 16 16 O -0.97 -16.72 18.08 -57.54 -1.04 -17.76 16 17 C -0.69 -7.51 4.71 -26.20 -0.12 -7.63 16 18 C 0.05 0.48 8.23 -7.54 -0.06 0.42 16 19 N -0.64 -6.55 8.76 -122.65 -1.07 -7.63 16 20 C 0.05 0.55 7.90 -7.53 -0.06 0.49 16 21 H 0.01 0.21 7.19 -51.93 -0.37 -0.16 16 22 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 23 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.09 2.10 6.07 -51.92 -0.32 1.79 16 26 H 0.01 0.16 6.60 -51.93 -0.34 -0.18 16 27 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 28 H 0.05 0.81 7.98 -51.93 -0.41 0.40 16 29 H 0.07 1.29 7.69 -51.93 -0.40 0.89 16 30 H 0.42 6.72 6.44 -34.48 -0.22 6.50 16 31 H 0.15 1.40 8.14 -51.93 -0.42 0.97 16 32 H 0.11 1.04 8.11 -51.92 -0.42 0.62 16 33 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.34 2.82 8.85 -39.29 -0.35 2.47 16 35 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.12 1.45 7.49 -51.93 -0.39 1.06 16 LS Contribution 299.24 15.07 4.51 4.51 Total: -1.00 -30.31 299.24 -9.02 -39.33 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -5.20 Total: 6.75 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: -0.11 Total: -19.81 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: -0.61 Total: -48.53 kcal Atomic # 8 Polarization: -33.65 SS G_CDS: -2.00 Total: -35.66 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 16 Polarization: 38.82 SS G_CDS: -0.59 Total: 38.23 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.31 -9.02 -39.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722244125.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.417 kcal (2) G-P(sol) polarization free energy of solvation -30.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds