Wall clock time and date at job start Mon Mar 30 2020 04:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47502 * 2 1 4 4 C 1.50697 * 109.47316 * 239.99492 * 2 1 3 5 5 H 1.08005 * 120.00707 * 239.99947 * 4 2 1 6 6 C 1.37876 * 119.99904 * 60.00370 * 4 2 1 7 7 N 1.31512 * 119.99937 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00207 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47357 * 89.99830 * 8 6 4 10 10 H 1.48506 * 109.47025 * 209.99829 * 8 6 4 11 11 H 1.48502 * 109.47260 * 329.99483 * 8 6 4 12 12 C 1.53003 * 109.47005 * 119.99745 * 2 1 3 13 13 N 1.46499 * 109.47166 * 299.99997 * 12 2 1 14 14 S 1.65605 * 119.99761 * 165.00041 * 13 12 2 15 15 O 1.42101 * 104.27492 * 308.92543 * 14 13 12 16 16 O 1.42102 * 104.27119 * 181.07069 * 14 13 12 17 17 C 1.81396 * 104.45194 * 64.99981 * 14 13 12 18 18 C 1.53506 * 114.17242 * 184.99607 * 17 14 13 19 19 N 1.47481 * 87.93471 * 139.67134 * 18 17 14 20 20 C 1.47488 * 87.83530 * 332.99146 * 19 18 17 21 21 H 1.08994 * 109.47276 * 300.00451 * 1 2 3 22 22 H 1.08997 * 109.46861 * 60.00040 * 1 2 3 23 23 H 1.09001 * 109.47270 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47874 * 180.02562 * 3 2 1 25 25 H 1.09007 * 109.47036 * 299.99836 * 3 2 1 26 26 H 1.08994 * 109.47668 * 59.99812 * 3 2 1 27 27 H 0.97001 * 120.00185 * 179.97438 * 7 6 4 28 28 H 1.09003 * 109.47386 * 179.97438 * 12 2 1 29 29 H 1.09001 * 109.46943 * 60.00000 * 12 2 1 30 30 H 0.96996 * 119.99930 * 344.99721 * 13 12 2 31 31 H 1.09007 * 113.38611 * 51.91777 * 17 14 13 32 32 H 1.09007 * 113.47650 * 24.90916 * 18 17 14 33 33 H 1.08997 * 113.53552 * 254.44637 * 18 17 14 34 34 H 1.00901 * 110.99857 * 84.68111 * 19 18 17 35 35 H 1.08997 * 113.47731 * 141.77388 * 20 19 18 36 36 H 1.09001 * 113.47471 * 272.24480 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3214 -1.1206 -4.0078 9 1 1.3428 -2.1618 -4.4117 10 1 2.4866 -0.1416 -5.1122 11 1 3.6294 -1.7585 -3.7121 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0306 2.4454 14 16 1.6255 -0.7781 3.9213 15 8 1.0209 -2.0453 3.7029 16 8 1.0523 0.1622 4.8194 17 6 3.4004 -0.9668 4.2447 18 6 3.7265 -1.7540 5.5216 19 7 4.8182 -2.4077 4.7760 20 6 4.0423 -2.1725 3.5440 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 3.1301 1.4425 -0.0005 25 1 1.6767 1.9563 -0.8901 26 1 1.6768 1.9564 0.8899 27 1 0.7089 1.1611 -3.4844 28 1 3.1299 -0.7216 1.2491 29 1 1.6766 -1.7489 1.2493 30 1 1.1850 0.8645 2.3729 31 1 3.9609 -0.0381 4.1377 32 1 2.9348 -2.4401 5.8228 33 1 4.0756 -1.1271 6.3421 34 1 5.6543 -1.8430 4.7901 35 1 4.6591 -1.8995 2.6878 36 1 3.3349 -2.9703 3.3175 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722244125.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:22 Heat of formation + Delta-G solvation = -61.029746 kcal Electronic energy + Delta-G solvation = -18911.533480 eV Core-core repulsion = 15944.135828 eV Total energy + Delta-G solvation = -2967.397652 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.62930 -38.61936 -38.10137 -37.03191 -34.89534 -32.30995 -28.90899 -27.51088 -27.39019 -27.01142 -26.19110 -22.24935 -20.70641 -20.26935 -18.90660 -18.08218 -17.67404 -17.56463 -16.95678 -16.54057 -15.61608 -15.14733 -14.91858 -14.71929 -14.34490 -14.09181 -13.96612 -13.77278 -13.36351 -13.28975 -13.19562 -13.09287 -12.88741 -12.72125 -12.48509 -12.25306 -12.06480 -12.03811 -11.68299 -11.43051 -11.07280 -10.64336 -10.40249 -10.23241 -9.70463 -7.96596 -6.12913 -0.71656 1.45968 1.49413 1.56117 1.74940 2.48346 2.56412 2.80753 2.95459 3.27496 3.45143 3.76202 4.11695 4.26738 4.41210 4.43543 4.53642 4.61273 4.70929 4.78490 4.85302 4.92741 5.12732 5.13509 5.25917 5.29237 5.54667 5.71899 5.73072 6.11748 6.20814 6.22469 6.31140 6.48619 6.95042 7.55246 9.02227 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.029181 B = 0.005982 C = 0.005376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.306717 B = 4679.507899 C = 5207.081695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.052 3.948 3 C -0.123 4.123 4 C -0.522 4.522 5 H 0.058 0.942 6 C 0.023 3.977 7 N -0.905 5.905 8 Si 0.944 3.056 9 H -0.284 1.284 10 H -0.289 1.289 11 H -0.267 1.267 12 C 0.138 3.862 13 N -1.112 6.112 14 S 2.619 3.381 15 O -0.989 6.989 16 O -0.996 6.996 17 C -0.658 4.658 18 C 0.043 3.957 19 N -0.639 5.639 20 C 0.041 3.959 21 H 0.026 0.974 22 H 0.057 0.943 23 H 0.016 0.984 24 H 0.032 0.968 25 H 0.055 0.945 26 H 0.032 0.968 27 H 0.257 0.743 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.416 0.584 31 H 0.184 0.816 32 H 0.103 0.897 33 H 0.117 0.883 34 H 0.356 0.644 35 H 0.106 0.894 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.948 -1.576 12.639 15.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.050 3.950 3 C -0.181 4.181 4 C -0.561 4.561 5 H 0.077 0.923 6 C -0.177 4.177 7 N -0.544 5.544 8 Si 0.771 3.229 9 H -0.211 1.211 10 H -0.215 1.215 11 H -0.191 1.191 12 C 0.012 3.988 13 N -0.872 5.872 14 S 2.714 3.286 15 O -0.979 6.979 16 O -0.987 6.987 17 C -0.772 4.772 18 C -0.089 4.089 19 N -0.268 5.268 20 C -0.090 4.090 21 H 0.045 0.955 22 H 0.076 0.924 23 H 0.035 0.965 24 H 0.051 0.949 25 H 0.074 0.926 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.252 0.748 31 H 0.201 0.799 32 H 0.121 0.879 33 H 0.135 0.865 34 H 0.173 0.827 35 H 0.125 0.875 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 7.195 -2.764 13.217 15.301 hybrid contribution 0.309 1.288 -1.644 2.111 sum 7.505 -1.476 11.573 13.872 Atomic orbital electron populations 1.21718 0.98611 0.98373 0.99701 1.18312 0.92302 0.93267 0.91129 1.21684 0.98591 0.97953 0.99915 1.21391 1.31372 1.12165 0.91197 0.92341 1.25525 0.95308 0.95569 1.01249 1.69952 1.37401 1.23703 1.23327 0.85774 0.78888 0.78271 0.79936 1.21060 1.21498 1.19126 1.21379 0.98076 0.95206 0.84165 1.55376 1.78801 1.30266 1.22775 1.04563 0.78429 0.73035 0.72556 1.93552 1.74481 1.44966 1.84855 1.93522 1.77223 1.63035 1.64893 1.33401 1.24804 1.10075 1.08915 1.23319 0.96793 0.95056 0.93709 1.65507 1.04493 1.51510 1.05268 1.23337 0.97747 0.92355 0.95579 0.95468 0.92378 0.96492 0.94869 0.92629 0.94916 0.93367 0.90880 0.92474 0.74830 0.79854 0.87873 0.86460 0.82713 0.87545 0.87622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.88 8.08 71.98 0.58 -5.30 16 2 C 0.05 2.28 0.51 -52.93 -0.03 2.26 16 3 C -0.12 -5.25 8.08 71.98 0.58 -4.67 16 4 C -0.52 -25.99 8.01 25.60 0.21 -25.79 16 5 H 0.06 2.83 7.74 -2.91 -0.02 2.80 16 6 C 0.02 1.17 5.15 84.65 0.44 1.60 16 7 N -0.90 -48.34 9.35 21.45 0.20 -48.14 16 8 Si 0.94 41.32 29.54 68.60 2.03 43.34 16 9 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 10 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 12 C 0.14 4.90 4.82 86.38 0.42 5.32 16 13 N -1.11 -34.58 5.22 -187.48 -0.98 -35.56 16 14 S 2.62 74.11 5.46 -56.49 -0.31 73.80 16 15 O -0.99 -34.94 16.75 -127.65 -2.14 -37.08 16 16 O -1.00 -33.17 18.08 -127.65 -2.31 -35.48 16 17 C -0.66 -12.20 4.71 30.94 0.15 -12.05 16 18 C 0.04 0.71 8.23 83.58 0.69 1.40 16 19 N -0.64 -10.94 8.76 -541.95 -4.75 -15.69 16 20 C 0.04 0.79 7.90 83.58 0.66 1.45 16 21 H 0.03 1.12 7.19 -2.39 -0.02 1.10 16 22 H 0.06 3.00 6.07 -2.39 -0.01 2.99 16 23 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.05 2.72 6.07 -2.38 -0.01 2.70 16 26 H 0.03 1.19 6.60 -2.39 -0.02 1.17 16 27 H 0.26 13.33 8.31 -92.71 -0.77 12.56 16 28 H 0.07 2.24 7.98 -2.39 -0.02 2.22 16 29 H 0.06 2.15 7.69 -2.39 -0.02 2.13 16 30 H 0.42 12.83 6.44 -96.75 -0.62 12.21 16 31 H 0.18 2.42 8.14 -2.38 -0.02 2.40 16 32 H 0.10 1.79 8.11 -2.38 -0.02 1.77 16 33 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.36 4.39 8.85 -89.69 -0.79 3.59 16 35 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.11 2.39 7.49 -2.39 -0.02 2.38 16 Total: -1.00 -64.82 299.24 -4.89 -69.71 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: -0.32 Total: 20.87 kcal Atomic # 6 Polarization: -39.46 SS G_CDS: 3.69 Total: -35.77 kcal Atomic # 7 Polarization: -93.87 SS G_CDS: -5.53 Total: -99.39 kcal Atomic # 8 Polarization: -68.11 SS G_CDS: -4.45 Total: -72.56 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.34 kcal Atomic # 16 Polarization: 74.11 SS G_CDS: -0.31 Total: 73.80 kcal Total: -64.82 -4.89 -69.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722244125.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.679 kcal (2) G-P(sol) polarization free energy of solvation -64.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds