Wall clock time and date at job start Mon Mar 30 2020 05:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47502 * 2 1 4 4 C 1.50706 * 109.47238 * 119.99835 * 2 1 3 5 5 H 1.07995 * 120.00167 * 119.72028 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 89.99430 * 8 6 4 10 10 H 1.48494 * 109.47031 * 209.99977 * 8 6 4 11 11 H 1.48504 * 109.46680 * 329.99678 * 8 6 4 12 12 N 1.46500 * 109.47007 * 239.99624 * 2 1 3 13 13 S 1.65595 * 120.00141 * 95.00184 * 12 2 1 14 14 O 1.42102 * 104.27928 * 181.06848 * 13 12 2 15 15 O 1.42094 * 104.27672 * 308.92772 * 13 12 2 16 16 C 1.81398 * 104.45047 * 64.99866 * 13 12 2 17 17 H 1.09002 * 109.50335 * 300.08100 * 16 13 12 18 18 C 1.53118 * 109.50457 * 180.02562 * 16 13 12 19 19 C 1.53123 * 109.16251 * 182.40633 * 18 16 13 20 20 C 1.53041 * 109.27836 * 57.65043 * 19 18 16 21 21 N 1.46847 * 109.52555 * 300.82392 * 20 19 18 22 22 C 1.46843 * 111.19676 * 61.74222 * 21 20 19 23 23 H 1.09002 * 109.47153 * 60.00287 * 1 2 3 24 24 H 1.08996 * 109.46952 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.00478 * 1 2 3 26 26 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 27 27 H 0.97003 * 120.00143 * 274.99867 * 12 2 1 28 28 H 1.09003 * 109.52095 * 302.30702 * 18 16 13 29 29 H 1.08998 * 109.52253 * 62.50010 * 18 16 13 30 30 H 1.09000 * 109.50697 * 177.59573 * 19 18 16 31 31 H 1.08998 * 109.49978 * 297.67438 * 19 18 16 32 32 H 1.08998 * 109.46099 * 60.83750 * 20 19 18 33 33 H 1.08997 * 109.46108 * 180.80197 * 20 19 18 34 34 H 1.00896 * 110.99946 * 297.64374 * 21 20 19 35 35 H 1.08999 * 109.46338 * 178.24733 * 22 21 20 36 36 H 1.08993 * 109.46433 * 58.27351 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6495 -1.5911 1.1315 6 6 1.6993 -0.2392 2.4827 7 7 2.1372 -0.8594 3.5566 8 14 0.6248 1.2792 2.6541 9 1 -0.8028 0.8729 2.6997 10 1 0.9760 1.9953 3.9067 11 1 0.8471 2.1766 1.4919 12 7 2.0183 -0.6907 -1.1961 13 16 2.4122 0.1769 -2.5505 14 8 2.8122 -0.8079 -3.4936 15 8 1.2751 0.9964 -2.7846 16 6 3.8313 1.1870 -2.0442 17 1 3.5409 1.8333 -1.2158 18 6 4.2944 2.0460 -3.2241 19 6 5.5287 2.8502 -2.8065 20 6 6.6256 1.8884 -2.3438 21 7 6.1338 1.0902 -1.2136 22 6 4.9775 0.2735 -1.6037 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.9026 -0.5281 4.4376 27 1 2.1109 -1.6563 -1.1948 28 1 4.5472 1.4019 -4.0664 29 1 3.4955 2.7288 -3.5133 30 1 5.8886 3.4315 -3.6553 31 1 5.2656 3.5228 -1.9901 32 1 6.8976 1.2257 -3.1653 33 1 7.5007 2.4586 -2.0323 34 1 5.9112 1.6789 -0.4249 35 1 4.6555 -0.3292 -0.7545 36 1 5.2573 -0.3816 -2.4286 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722265192.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:14 Heat of formation + Delta-G solvation = -77.936249 kcal Electronic energy + Delta-G solvation = -19207.536867 eV Core-core repulsion = 16239.406094 eV Total energy + Delta-G solvation = -2968.130773 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.71147 -36.77983 -35.78490 -35.54272 -32.31241 -31.98399 -31.07706 -29.22350 -25.17232 -23.90079 -23.32552 -21.12172 -20.75515 -18.81625 -17.67073 -16.63865 -16.22385 -15.87530 -15.65004 -15.24066 -14.80145 -14.43782 -13.64348 -13.47059 -13.25713 -13.05040 -12.48664 -12.36842 -12.25545 -11.99417 -11.79744 -11.74462 -11.63077 -11.44668 -11.27666 -11.24316 -10.84154 -10.73524 -10.26981 -10.21172 -9.62647 -9.38847 -8.89640 -8.55948 -8.37218 -6.25654 -4.28363 0.65786 3.16655 3.22028 3.27283 3.28679 4.05602 4.23382 4.24246 4.41833 4.49606 4.70271 4.86237 5.05569 5.05821 5.26444 5.31661 5.39871 5.61797 5.72478 5.78191 5.80722 5.91930 5.95431 6.09957 6.18750 6.48775 6.57212 6.92214 6.93555 7.19249 7.34986 7.36188 7.82642 8.32176 8.77119 9.33794 10.86470 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.021083 B = 0.008158 C = 0.006975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.762564 B = 3431.540321 C = 4013.424316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.248 3.752 3 H 0.034 0.966 4 C -0.529 4.529 5 H 0.085 0.915 6 C 0.077 3.923 7 N -0.889 5.889 8 Si 0.881 3.119 9 H -0.275 1.275 10 H -0.294 1.294 11 H -0.266 1.266 12 N -1.094 6.094 13 S 2.613 3.387 14 O -0.972 6.972 15 O -0.964 6.964 16 C -0.634 4.634 17 H 0.137 0.863 18 C -0.106 4.106 19 C -0.149 4.149 20 C 0.052 3.948 21 N -0.672 5.672 22 C 0.079 3.921 23 H 0.046 0.954 24 H 0.059 0.941 25 H 0.046 0.954 26 H 0.267 0.733 27 H 0.415 0.585 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.347 0.653 35 H 0.105 0.895 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.664 6.399 -10.390 13.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.142 3.858 3 H 0.052 0.948 4 C -0.568 4.568 5 H 0.103 0.897 6 C -0.127 4.127 7 N -0.526 5.526 8 Si 0.711 3.289 9 H -0.201 1.201 10 H -0.221 1.221 11 H -0.191 1.191 12 N -0.854 5.854 13 S 2.704 3.296 14 O -0.963 6.963 15 O -0.954 6.954 16 C -0.745 4.745 17 H 0.155 0.845 18 C -0.145 4.145 19 C -0.189 4.189 20 C -0.077 4.077 21 N -0.300 5.300 22 C -0.053 4.053 23 H 0.065 0.935 24 H 0.078 0.922 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.249 0.751 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.165 0.835 35 H 0.123 0.877 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.677 6.032 -11.102 13.852 hybrid contribution -0.977 1.426 0.806 1.908 sum 4.699 7.458 -10.296 13.554 Atomic orbital electron populations 1.22606 0.99001 1.01723 0.99747 1.18842 0.90676 0.92332 0.83954 0.94847 1.21114 1.33174 1.14449 0.88101 0.89692 1.24897 0.95429 0.96643 0.95715 1.69869 1.44720 1.39923 0.98051 0.86967 0.81107 0.83579 0.77241 1.20128 1.22149 1.19093 1.55328 1.80865 1.18844 1.30341 1.04812 0.75964 0.75025 0.73754 1.93538 1.84665 1.57490 1.60563 1.93566 1.45878 1.71437 1.84510 1.31204 1.19892 1.14253 1.09107 0.84467 1.21351 0.99410 0.98494 0.95229 1.22162 0.96134 0.98644 1.01961 1.22088 0.96481 0.94894 0.94282 1.60587 1.33621 1.27862 1.07968 1.21857 0.86521 0.94164 1.02713 0.93459 0.92219 0.93542 0.92276 0.75086 0.90557 0.90567 0.90961 0.91498 0.90748 0.90537 0.83496 0.87707 0.89651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.71 9.00 37.16 0.33 -3.38 16 2 C 0.25 5.38 2.25 -69.08 -0.16 5.23 16 3 H 0.03 0.71 6.21 -51.93 -0.32 0.39 16 4 C -0.53 -13.38 9.34 -34.44 -0.32 -13.70 16 5 H 0.09 2.29 8.06 -52.49 -0.42 1.87 16 6 C 0.08 2.06 5.45 -17.82 -0.10 1.96 16 7 N -0.89 -25.33 13.96 55.43 0.77 -24.56 16 8 Si 0.88 20.53 24.37 -169.99 -4.14 16.39 16 9 H -0.27 -6.32 6.87 56.52 0.39 -5.93 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.27 -5.89 6.53 56.52 0.37 -5.52 16 12 N -1.09 -20.30 5.07 -5.88 -0.03 -20.33 16 13 S 2.61 44.61 4.82 -107.50 -0.52 44.09 16 14 O -0.97 -17.96 17.93 -57.54 -1.03 -18.99 16 15 O -0.96 -19.15 17.11 -57.54 -0.98 -20.13 16 16 C -0.63 -8.93 2.79 -26.65 -0.07 -9.01 16 17 H 0.14 1.92 7.44 -51.92 -0.39 1.54 16 18 C -0.11 -1.27 5.29 -26.61 -0.14 -1.41 16 19 C -0.15 -1.50 6.08 -26.65 -0.16 -1.66 16 20 C 0.05 0.55 6.55 -3.83 -0.03 0.52 16 21 N -0.67 -8.58 6.87 -113.82 -0.78 -9.36 16 22 C 0.08 1.10 5.71 -3.83 -0.02 1.08 16 23 H 0.05 0.97 7.42 -51.93 -0.39 0.58 16 24 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 25 H 0.05 1.02 3.27 -51.93 -0.17 0.85 16 26 H 0.27 7.18 8.31 -40.82 -0.34 6.85 16 27 H 0.41 7.22 8.79 -34.46 -0.30 6.92 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.35 4.29 8.86 -39.29 -0.35 3.95 16 35 H 0.10 1.61 7.95 -51.93 -0.41 1.19 16 36 H 0.09 1.16 8.08 -51.93 -0.42 0.74 16 LS Contribution 294.47 15.07 4.44 4.44 Total: -1.00 -30.89 294.47 -8.25 -39.14 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -5.31 Total: 9.69 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: -0.66 Total: -20.37 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: -0.04 Total: -54.25 kcal Atomic # 8 Polarization: -37.11 SS G_CDS: -2.02 Total: -39.12 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.14 Total: 16.39 kcal Atomic # 16 Polarization: 44.61 SS G_CDS: -0.52 Total: 44.09 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.89 -8.25 -39.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722265192.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.798 kcal (2) G-P(sol) polarization free energy of solvation -30.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds