Wall clock time and date at job start Mon Mar 30 2020 05:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47502 * 2 1 4 4 C 1.50706 * 109.47238 * 119.99835 * 2 1 3 5 5 H 1.07995 * 120.00167 * 119.72028 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 89.99430 * 8 6 4 10 10 H 1.48494 * 109.47031 * 209.99977 * 8 6 4 11 11 H 1.48504 * 109.46680 * 329.99678 * 8 6 4 12 12 N 1.46500 * 109.47007 * 239.99624 * 2 1 3 13 13 S 1.65595 * 120.00141 * 95.00184 * 12 2 1 14 14 O 1.42102 * 104.27928 * 181.06848 * 13 12 2 15 15 O 1.42094 * 104.27672 * 308.92772 * 13 12 2 16 16 C 1.81398 * 104.45047 * 64.99866 * 13 12 2 17 17 H 1.09002 * 109.50335 * 300.08100 * 16 13 12 18 18 C 1.53118 * 109.50457 * 180.02562 * 16 13 12 19 19 C 1.53123 * 109.16251 * 182.40633 * 18 16 13 20 20 C 1.53041 * 109.27836 * 57.65043 * 19 18 16 21 21 N 1.46847 * 109.52555 * 300.82392 * 20 19 18 22 22 C 1.46843 * 111.19676 * 61.74222 * 21 20 19 23 23 H 1.09002 * 109.47153 * 60.00287 * 1 2 3 24 24 H 1.08996 * 109.46952 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.00478 * 1 2 3 26 26 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 27 27 H 0.97003 * 120.00143 * 274.99867 * 12 2 1 28 28 H 1.09003 * 109.52095 * 302.30702 * 18 16 13 29 29 H 1.08998 * 109.52253 * 62.50010 * 18 16 13 30 30 H 1.09000 * 109.50697 * 177.59573 * 19 18 16 31 31 H 1.08998 * 109.49978 * 297.67438 * 19 18 16 32 32 H 1.08998 * 109.46099 * 60.83750 * 20 19 18 33 33 H 1.08997 * 109.46108 * 180.80197 * 20 19 18 34 34 H 1.00896 * 110.99946 * 297.64374 * 21 20 19 35 35 H 1.08999 * 109.46338 * 178.24733 * 22 21 20 36 36 H 1.08993 * 109.46433 * 58.27351 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6495 -1.5911 1.1315 6 6 1.6993 -0.2392 2.4827 7 7 2.1372 -0.8594 3.5566 8 14 0.6248 1.2792 2.6541 9 1 -0.8028 0.8729 2.6997 10 1 0.9760 1.9953 3.9067 11 1 0.8471 2.1766 1.4919 12 7 2.0183 -0.6907 -1.1961 13 16 2.4122 0.1769 -2.5505 14 8 2.8122 -0.8079 -3.4936 15 8 1.2751 0.9964 -2.7846 16 6 3.8313 1.1870 -2.0442 17 1 3.5409 1.8333 -1.2158 18 6 4.2944 2.0460 -3.2241 19 6 5.5287 2.8502 -2.8065 20 6 6.6256 1.8884 -2.3438 21 7 6.1338 1.0902 -1.2136 22 6 4.9775 0.2735 -1.6037 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.9026 -0.5281 4.4376 27 1 2.1109 -1.6563 -1.1948 28 1 4.5472 1.4019 -4.0664 29 1 3.4955 2.7288 -3.5133 30 1 5.8886 3.4315 -3.6553 31 1 5.2656 3.5228 -1.9901 32 1 6.8976 1.2257 -3.1653 33 1 7.5007 2.4586 -2.0323 34 1 5.9112 1.6789 -0.4249 35 1 4.6555 -0.3292 -0.7545 36 1 5.2573 -0.3816 -2.4286 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722265192.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:14 Heat of formation + Delta-G solvation = -104.159160 kcal Electronic energy + Delta-G solvation = -19208.673978 eV Core-core repulsion = 16239.406094 eV Total energy + Delta-G solvation = -2969.267884 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.69538 -38.25776 -37.44385 -37.02216 -34.25051 -32.98550 -32.06792 -30.90263 -27.11465 -24.86823 -24.36306 -22.87518 -21.74443 -20.23132 -19.30439 -18.01862 -17.78003 -17.51222 -16.74389 -16.63190 -15.85457 -15.63891 -15.29553 -14.97067 -14.48389 -14.26477 -14.11785 -13.98652 -13.57788 -13.35777 -13.23560 -13.12015 -12.98187 -12.94450 -12.49518 -12.36867 -12.27750 -12.09857 -11.76523 -11.47715 -11.42731 -11.12362 -10.83845 -10.20113 -9.39337 -8.30427 -6.36047 -0.70121 1.33466 1.37630 1.46247 1.80568 2.30194 2.74424 3.04100 3.11284 3.30106 3.42464 3.72293 3.87296 4.05858 4.18666 4.29107 4.38173 4.45551 4.53020 4.71895 4.73342 4.79322 4.86307 4.87787 4.91400 5.04514 5.20620 5.23425 5.46255 5.48056 5.97410 6.25825 6.31317 6.40601 6.71855 7.29450 8.84954 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.021083 B = 0.008158 C = 0.006975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.762564 B = 3431.540321 C = 4013.424316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.251 3.749 3 H 0.046 0.954 4 C -0.522 4.522 5 H 0.056 0.944 6 C 0.026 3.974 7 N -0.936 5.936 8 Si 0.929 3.071 9 H -0.269 1.269 10 H -0.295 1.295 11 H -0.244 1.244 12 N -1.098 6.098 13 S 2.619 3.381 14 O -0.988 6.988 15 O -0.992 6.992 16 C -0.613 4.613 17 H 0.142 0.858 18 C -0.115 4.115 19 C -0.143 4.143 20 C 0.049 3.951 21 N -0.679 5.679 22 C 0.078 3.922 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.043 0.957 26 H 0.268 0.732 27 H 0.417 0.583 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.348 0.652 35 H 0.085 0.915 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.148 8.380 -11.634 15.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.143 3.857 3 H 0.063 0.937 4 C -0.561 4.561 5 H 0.074 0.926 6 C -0.173 4.173 7 N -0.575 5.575 8 Si 0.756 3.244 9 H -0.196 1.196 10 H -0.223 1.223 11 H -0.168 1.168 12 N -0.857 5.857 13 S 2.714 3.286 14 O -0.978 6.978 15 O -0.982 6.982 16 C -0.727 4.727 17 H 0.160 0.840 18 C -0.154 4.154 19 C -0.183 4.183 20 C -0.081 4.081 21 N -0.308 5.308 22 C -0.053 4.053 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.062 0.938 26 H 0.077 0.923 27 H 0.252 0.748 28 H 0.101 0.899 29 H 0.103 0.897 30 H 0.116 0.884 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.114 0.886 34 H 0.167 0.833 35 H 0.104 0.896 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.127 7.989 -12.383 15.960 hybrid contribution -1.011 0.762 1.130 1.697 sum 5.116 8.751 -11.253 15.146 Atomic orbital electron populations 1.22619 0.98613 1.02042 1.00115 1.18668 0.90959 0.92575 0.83451 0.93675 1.21311 1.31828 1.13376 0.89592 0.92554 1.25611 0.96795 0.99434 0.95474 1.69998 1.46878 1.42007 0.98644 0.86161 0.79617 0.80754 0.77836 1.19575 1.22283 1.16770 1.55242 1.81536 1.19238 1.29635 1.04605 0.76292 0.74691 0.72997 1.93514 1.84936 1.58484 1.60916 1.93524 1.48205 1.71630 1.84814 1.31015 1.17576 1.13816 1.10289 0.83970 1.21555 1.00781 0.98709 0.94344 1.22158 0.94740 0.98348 1.03053 1.22227 0.97231 0.95019 0.93583 1.60604 1.32548 1.28629 1.09039 1.21803 0.87050 0.94382 1.02078 0.92312 0.92110 0.93835 0.92311 0.74845 0.89850 0.89692 0.88441 0.91221 0.90465 0.88637 0.83310 0.89621 0.89331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.29 9.00 71.98 0.65 -6.64 16 2 C 0.25 10.63 2.25 44.25 0.10 10.73 16 3 H 0.05 1.83 6.21 -2.39 -0.01 1.82 16 4 C -0.52 -26.56 9.34 25.60 0.24 -26.32 16 5 H 0.06 3.13 8.06 -2.91 -0.02 3.11 16 6 C 0.03 1.41 5.45 84.66 0.46 1.87 16 7 N -0.94 -54.33 13.96 21.45 0.30 -54.03 16 8 Si 0.93 41.31 24.37 68.60 1.67 42.98 16 9 H -0.27 -11.71 6.87 99.48 0.68 -11.02 16 10 H -0.30 -13.12 7.11 99.48 0.71 -12.41 16 11 H -0.24 -9.89 6.53 99.48 0.65 -9.24 16 12 N -1.10 -40.28 5.07 -172.52 -0.87 -41.16 16 13 S 2.62 86.50 4.82 -56.49 -0.27 86.23 16 14 O -0.99 -35.68 17.93 -127.65 -2.29 -37.97 16 15 O -0.99 -37.97 17.11 -127.65 -2.18 -40.16 16 16 C -0.61 -16.09 2.79 30.65 0.09 -16.00 16 17 H 0.14 3.65 7.44 -2.39 -0.02 3.64 16 18 C -0.11 -2.41 5.29 30.67 0.16 -2.25 16 19 C -0.14 -2.35 6.08 30.65 0.19 -2.16 16 20 C 0.05 0.86 6.55 86.33 0.57 1.43 16 21 N -0.68 -16.01 6.87 -514.01 -3.53 -19.54 16 22 C 0.08 2.10 5.71 86.33 0.49 2.60 16 23 H 0.06 2.29 7.42 -2.39 -0.02 2.28 16 24 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 25 H 0.04 1.82 3.27 -2.39 -0.01 1.82 16 26 H 0.27 14.67 8.31 -92.70 -0.77 13.90 16 27 H 0.42 14.67 8.79 -96.75 -0.85 13.82 16 28 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.10 1.37 8.14 -2.39 -0.02 1.36 16 34 H 0.35 7.96 8.86 -89.70 -0.79 7.16 16 35 H 0.09 2.62 7.95 -2.39 -0.02 2.60 16 36 H 0.09 2.30 8.08 -2.39 -0.02 2.28 16 Total: -1.00 -65.10 294.47 -4.87 -69.97 By element: Atomic # 1 Polarization: 31.06 SS G_CDS: -0.63 Total: 30.43 kcal Atomic # 6 Polarization: -39.69 SS G_CDS: 2.94 Total: -36.75 kcal Atomic # 7 Polarization: -110.62 SS G_CDS: -4.11 Total: -114.73 kcal Atomic # 8 Polarization: -73.65 SS G_CDS: -4.47 Total: -78.13 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 1.67 Total: 42.98 kcal Atomic # 16 Polarization: 86.50 SS G_CDS: -0.27 Total: 86.23 kcal Total: -65.10 -4.87 -69.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722265192.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.192 kcal (2) G-P(sol) polarization free energy of solvation -65.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds