Wall clock time and date at job start Mon Mar 30 2020 05:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.46797 * 2 1 4 4 C 1.50700 * 109.47219 * 119.99786 * 2 1 3 5 5 H 1.08009 * 119.99656 * 120.00035 * 4 2 1 6 6 C 1.37877 * 120.00403 * 300.00151 * 4 2 1 7 7 N 1.31516 * 119.99877 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00018 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47035 * 60.00066 * 8 6 4 10 10 H 1.48499 * 109.47221 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47321 * 300.00507 * 8 6 4 12 12 N 1.46502 * 109.46919 * 240.00335 * 2 1 3 13 13 S 1.65600 * 120.00062 * 125.46042 * 12 2 1 14 14 O 1.42098 * 104.27382 * 50.57016 * 13 12 2 15 15 O 1.42095 * 104.27724 * 178.42751 * 13 12 2 16 16 C 1.81397 * 104.44989 * 294.50067 * 13 12 2 17 17 H 1.08997 * 109.50478 * 60.04000 * 16 13 12 18 18 C 1.53114 * 109.50446 * 180.12170 * 16 13 12 19 19 C 1.53124 * 109.16169 * 177.59567 * 18 16 13 20 20 C 1.53038 * 109.27446 * 302.34088 * 19 18 16 21 21 N 1.46848 * 109.52140 * 59.18546 * 20 19 18 22 22 C 1.46854 * 111.23046 * 298.27167 * 21 20 19 23 23 H 1.08997 * 109.47087 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46703 * 299.99335 * 1 2 3 25 25 H 1.08994 * 109.47638 * 59.99680 * 1 2 3 26 26 H 0.96996 * 119.99671 * 180.02562 * 7 6 4 27 27 H 0.96998 * 119.99948 * 305.45769 * 12 2 1 28 28 H 1.08999 * 109.52264 * 297.49929 * 18 16 13 29 29 H 1.08997 * 109.52299 * 57.62786 * 18 16 13 30 30 H 1.08990 * 109.50465 * 62.28404 * 19 18 16 31 31 H 1.09005 * 109.50422 * 182.40756 * 19 18 16 32 32 H 1.09005 * 109.46241 * 179.19145 * 20 19 18 33 33 H 1.08993 * 109.47054 * 299.16284 * 20 19 18 34 34 H 1.00897 * 111.00350 * 62.35189 * 21 20 19 35 35 H 1.08999 * 109.42496 * 301.68763 * 22 21 20 36 36 H 1.08995 * 109.49381 * 181.71837 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6534 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8296 2.6035 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1209 4.0081 10 1 1.8272 -0.4200 5.2204 11 1 1.8261 -2.5203 4.0076 12 7 2.0183 -0.6906 -1.1962 13 16 3.0787 0.0694 -2.2162 14 8 4.1067 0.5480 -1.3597 15 8 3.3530 -0.8976 -3.2206 16 6 2.1300 1.4528 -2.9066 17 1 1.8025 2.1082 -2.0996 18 6 3.0106 2.2413 -3.8799 19 6 2.1849 3.3702 -4.5031 20 6 0.9624 2.7740 -5.2046 21 7 0.1522 2.0306 -4.2313 22 6 0.9085 0.9123 -3.6535 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 0.7088 1.1612 3.4845 27 1 1.7205 -1.5929 -1.3908 28 1 3.8591 2.6646 -3.3423 29 1 3.3715 1.5767 -4.6648 30 1 1.8577 4.0559 -3.7216 31 1 2.7942 3.9089 -5.2289 32 1 0.3647 3.5764 -5.6371 33 1 1.2904 2.0991 -5.9951 34 1 -0.1964 2.6424 -3.5086 35 1 1.2362 0.2457 -4.4512 36 1 0.2723 0.3630 -2.9596 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722265194.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:18 Heat of formation + Delta-G solvation = -85.606173 kcal Electronic energy + Delta-G solvation = -19079.420501 eV Core-core repulsion = 16110.957135 eV Total energy + Delta-G solvation = -2968.463366 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.73806 -36.55932 -35.52167 -35.33896 -32.22332 -31.98443 -31.06124 -28.35139 -25.22860 -23.91705 -23.33824 -20.97552 -20.74017 -18.64831 -17.24698 -16.78987 -16.15286 -15.63823 -15.54436 -14.99267 -14.79022 -14.40596 -13.55769 -13.47724 -13.17022 -12.75230 -12.41127 -12.26968 -11.94066 -11.58522 -11.52025 -11.47491 -11.40495 -11.29768 -11.12651 -10.94130 -10.84959 -10.55847 -10.36773 -10.16064 -10.00544 -9.52831 -8.53505 -8.48641 -8.24426 -6.10949 -4.16868 0.80740 3.30714 3.34281 3.37139 3.45025 4.15611 4.24413 4.39148 4.49248 4.53756 4.71881 4.88882 5.18013 5.20746 5.26739 5.29706 5.39769 5.61923 5.69527 5.75902 5.81586 5.88760 6.06867 6.25353 6.70174 6.74282 6.84159 6.90514 7.26484 7.51517 7.60675 7.87387 8.04386 8.23362 8.85549 9.49430 10.94724 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.030019 B = 0.006409 C = 0.005915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.518022 B = 4367.906853 C = 4732.990745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.273 3.727 3 H 0.042 0.958 4 C -0.520 4.520 5 H 0.063 0.937 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.900 3.100 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.276 1.276 12 N -1.102 6.102 13 S 2.614 3.386 14 O -0.952 6.952 15 O -0.980 6.980 16 C -0.639 4.639 17 H 0.137 0.863 18 C -0.105 4.105 19 C -0.149 4.149 20 C 0.053 3.947 21 N -0.674 5.674 22 C 0.079 3.921 23 H 0.035 0.965 24 H 0.094 0.906 25 H 0.014 0.986 26 H 0.264 0.736 27 H 0.407 0.593 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.345 0.655 35 H 0.086 0.914 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.445 4.305 -12.535 13.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.169 3.831 3 H 0.059 0.941 4 C -0.559 4.559 5 H 0.081 0.919 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.862 5.862 13 S 2.704 3.296 14 O -0.941 6.941 15 O -0.970 6.970 16 C -0.748 4.748 17 H 0.155 0.845 18 C -0.144 4.144 19 C -0.189 4.189 20 C -0.077 4.077 21 N -0.303 5.303 22 C -0.052 4.052 23 H 0.055 0.945 24 H 0.113 0.887 25 H 0.033 0.967 26 H 0.074 0.926 27 H 0.240 0.760 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.163 0.837 35 H 0.104 0.896 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.897 3.983 -12.991 13.618 hybrid contribution 0.266 0.192 1.522 1.557 sum -0.631 4.175 -11.469 12.222 Atomic orbital electron populations 1.22180 0.97955 1.00163 1.00826 1.18507 0.91334 0.92120 0.81150 0.94058 1.21378 1.31304 1.13148 0.90099 0.91875 1.24911 0.94884 0.95054 0.99103 1.69828 1.36661 1.22853 1.23967 0.86527 0.79429 0.79616 0.81699 1.20083 1.21216 1.20179 1.55542 1.67083 1.26331 1.37218 1.04843 0.75309 0.75615 0.73848 1.93607 1.53724 1.82545 1.64233 1.93514 1.84340 1.57614 1.61514 1.31268 1.12786 1.20756 1.10004 0.84488 1.21328 0.97433 0.97950 0.97724 1.22152 0.98463 0.97599 1.00665 1.22077 0.92760 0.97548 0.95289 1.60633 1.36715 1.13201 1.19706 1.21830 0.90943 0.94169 0.98261 0.94547 0.88732 0.96743 0.92631 0.75992 0.90410 0.90631 0.91448 0.90939 0.90543 0.90731 0.83731 0.89568 0.88618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 9.29 37.16 0.35 -2.88 16 2 C 0.27 6.32 2.75 -69.08 -0.19 6.13 16 3 H 0.04 1.02 7.62 -51.93 -0.40 0.62 16 4 C -0.52 -13.91 8.84 -34.44 -0.30 -14.21 16 5 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.34 11.32 55.43 0.63 -23.71 16 8 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 N -1.10 -21.50 4.97 -5.88 -0.03 -21.53 16 13 S 2.61 48.02 4.75 -107.50 -0.51 47.51 16 14 O -0.95 -21.66 17.70 -57.54 -1.02 -22.68 16 15 O -0.98 -19.05 17.94 -57.54 -1.03 -20.08 16 16 C -0.64 -9.09 2.91 -26.65 -0.08 -9.17 16 17 H 0.14 1.96 8.00 -51.93 -0.42 1.55 16 18 C -0.11 -1.31 5.29 -26.61 -0.14 -1.45 16 19 C -0.15 -1.50 6.08 -26.65 -0.16 -1.66 16 20 C 0.05 0.53 6.56 -3.83 -0.03 0.50 16 21 N -0.67 -7.85 6.87 -113.81 -0.78 -8.63 16 22 C 0.08 1.03 5.71 -3.83 -0.02 1.01 16 23 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.09 2.26 6.07 -51.93 -0.32 1.95 16 25 H 0.01 0.25 7.28 -51.93 -0.38 -0.13 16 26 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 27 H 0.41 7.21 8.92 -34.47 -0.31 6.91 16 28 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.34 3.80 8.86 -39.29 -0.35 3.45 16 35 H 0.09 1.11 8.08 -51.93 -0.42 0.70 16 36 H 0.10 1.27 7.08 -51.93 -0.37 0.90 16 LS Contribution 302.15 15.07 4.55 4.55 Total: -1.00 -31.53 302.15 -9.33 -40.87 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -5.45 Total: 7.74 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: -0.67 Total: -20.14 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: -0.18 Total: -53.87 kcal Atomic # 8 Polarization: -40.71 SS G_CDS: -2.05 Total: -42.76 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 48.02 SS G_CDS: -0.51 Total: 47.51 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.53 -9.33 -40.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722265194.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.738 kcal (2) G-P(sol) polarization free energy of solvation -31.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds