Wall clock time and date at job start Mon Mar 30 2020 05:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.46797 * 2 1 4 4 C 1.50700 * 109.47219 * 119.99786 * 2 1 3 5 5 H 1.08009 * 119.99656 * 120.00035 * 4 2 1 6 6 C 1.37877 * 120.00403 * 300.00151 * 4 2 1 7 7 N 1.31516 * 119.99877 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00018 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47035 * 60.00066 * 8 6 4 10 10 H 1.48499 * 109.47221 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47321 * 300.00507 * 8 6 4 12 12 N 1.46502 * 109.46919 * 240.00335 * 2 1 3 13 13 S 1.65600 * 120.00062 * 125.46042 * 12 2 1 14 14 O 1.42098 * 104.27382 * 50.57016 * 13 12 2 15 15 O 1.42095 * 104.27724 * 178.42751 * 13 12 2 16 16 C 1.81397 * 104.44989 * 294.50067 * 13 12 2 17 17 H 1.08997 * 109.50478 * 60.04000 * 16 13 12 18 18 C 1.53114 * 109.50446 * 180.12170 * 16 13 12 19 19 C 1.53124 * 109.16169 * 177.59567 * 18 16 13 20 20 C 1.53038 * 109.27446 * 302.34088 * 19 18 16 21 21 N 1.46848 * 109.52140 * 59.18546 * 20 19 18 22 22 C 1.46854 * 111.23046 * 298.27167 * 21 20 19 23 23 H 1.08997 * 109.47087 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46703 * 299.99335 * 1 2 3 25 25 H 1.08994 * 109.47638 * 59.99680 * 1 2 3 26 26 H 0.96996 * 119.99671 * 180.02562 * 7 6 4 27 27 H 0.96998 * 119.99948 * 305.45769 * 12 2 1 28 28 H 1.08999 * 109.52264 * 297.49929 * 18 16 13 29 29 H 1.08997 * 109.52299 * 57.62786 * 18 16 13 30 30 H 1.08990 * 109.50465 * 62.28404 * 19 18 16 31 31 H 1.09005 * 109.50422 * 182.40756 * 19 18 16 32 32 H 1.09005 * 109.46241 * 179.19145 * 20 19 18 33 33 H 1.08993 * 109.47054 * 299.16284 * 20 19 18 34 34 H 1.00897 * 111.00350 * 62.35189 * 21 20 19 35 35 H 1.08999 * 109.42496 * 301.68763 * 22 21 20 36 36 H 1.08995 * 109.49381 * 181.71837 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6534 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8296 2.6035 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1209 4.0081 10 1 1.8272 -0.4200 5.2204 11 1 1.8261 -2.5203 4.0076 12 7 2.0183 -0.6906 -1.1962 13 16 3.0787 0.0694 -2.2162 14 8 4.1067 0.5480 -1.3597 15 8 3.3530 -0.8976 -3.2206 16 6 2.1300 1.4528 -2.9066 17 1 1.8025 2.1082 -2.0996 18 6 3.0106 2.2413 -3.8799 19 6 2.1849 3.3702 -4.5031 20 6 0.9624 2.7740 -5.2046 21 7 0.1522 2.0306 -4.2313 22 6 0.9085 0.9123 -3.6535 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 0.7088 1.1612 3.4845 27 1 1.7205 -1.5929 -1.3908 28 1 3.8591 2.6646 -3.3423 29 1 3.3715 1.5767 -4.6648 30 1 1.8577 4.0559 -3.7216 31 1 2.7942 3.9089 -5.2289 32 1 0.3647 3.5764 -5.6371 33 1 1.2904 2.0991 -5.9951 34 1 -0.1964 2.6424 -3.5086 35 1 1.2362 0.2457 -4.4512 36 1 0.2723 0.3630 -2.9596 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722265194.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:17 Heat of formation + Delta-G solvation = -111.306411 kcal Electronic energy + Delta-G solvation = -19080.534947 eV Core-core repulsion = 16110.957135 eV Total energy + Delta-G solvation = -2969.577812 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.70308 -38.15060 -37.25908 -36.96020 -34.13225 -32.97921 -32.03416 -30.09704 -27.19949 -24.87528 -24.35562 -22.77022 -21.72222 -20.13888 -18.95069 -18.31206 -17.62714 -17.19263 -16.72439 -16.56083 -15.86720 -15.63572 -15.26061 -14.64253 -14.48610 -14.07782 -13.99869 -13.38421 -13.30554 -13.19889 -13.09310 -13.02407 -12.93368 -12.80319 -12.43395 -12.36012 -12.18659 -12.15714 -11.98093 -11.76903 -11.41853 -11.20639 -10.51632 -10.02469 -9.40687 -8.13798 -6.26065 -0.64953 1.42102 1.44036 1.50962 1.91871 2.43993 2.82797 3.14482 3.16554 3.31489 3.43604 3.76221 3.88064 4.05907 4.24991 4.36436 4.48453 4.53575 4.68660 4.78414 4.84090 4.90499 4.94979 5.04251 5.10452 5.14723 5.24063 5.60810 5.78299 5.94035 6.02950 6.23974 6.40982 6.44475 6.80841 7.42823 8.89566 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.030019 B = 0.006409 C = 0.005915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.518022 B = 4367.906853 C = 4732.990745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.278 3.722 3 H 0.023 0.977 4 C -0.547 4.547 5 H 0.050 0.950 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.951 3.049 9 H -0.282 1.282 10 H -0.278 1.278 11 H -0.269 1.269 12 N -1.103 6.103 13 S 2.612 3.388 14 O -1.005 7.005 15 O -0.993 6.993 16 C -0.607 4.607 17 H 0.140 0.860 18 C -0.117 4.117 19 C -0.142 4.142 20 C 0.050 3.950 21 N -0.674 5.674 22 C 0.078 3.922 23 H 0.038 0.962 24 H 0.069 0.931 25 H 0.048 0.952 26 H 0.266 0.734 27 H 0.414 0.586 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.078 0.922 34 H 0.350 0.650 35 H 0.089 0.911 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.369 5.104 -13.858 14.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.172 3.828 3 H 0.041 0.959 4 C -0.586 4.586 5 H 0.068 0.932 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.777 3.223 9 H -0.208 1.208 10 H -0.203 1.203 11 H -0.194 1.194 12 N -0.862 5.862 13 S 2.708 3.292 14 O -0.995 6.995 15 O -0.984 6.984 16 C -0.722 4.722 17 H 0.158 0.842 18 C -0.156 4.156 19 C -0.182 4.182 20 C -0.080 4.080 21 N -0.303 5.303 22 C -0.053 4.053 23 H 0.058 0.942 24 H 0.087 0.913 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.248 0.752 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.114 0.886 32 H 0.116 0.884 33 H 0.096 0.904 34 H 0.168 0.832 35 H 0.108 0.892 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.802 4.728 -14.296 15.165 hybrid contribution 0.557 0.002 1.820 1.904 sum -1.245 4.730 -12.475 13.400 Atomic orbital electron populations 1.21989 0.96313 1.00467 1.01235 1.18251 0.92441 0.90930 0.81154 0.95892 1.21758 1.31519 1.13226 0.92104 0.93200 1.25568 0.95179 0.95802 1.01460 1.69919 1.37083 1.23491 1.24483 0.85728 0.78382 0.79137 0.79101 1.20784 1.20286 1.19355 1.55315 1.66791 1.27122 1.36992 1.04703 0.74938 0.76302 0.73215 1.93538 1.56620 1.83323 1.65993 1.93486 1.84743 1.58998 1.61140 1.30993 1.12661 1.18035 1.10466 0.84219 1.21545 0.97577 0.98891 0.97570 1.22160 0.98394 0.96600 1.01088 1.22218 0.92802 0.98107 0.94841 1.60668 1.36476 1.13326 1.19814 1.21887 0.90216 0.94966 0.98256 0.94250 0.91258 0.93278 0.92522 0.75222 0.90575 0.89855 0.91263 0.88628 0.88359 0.90400 0.83191 0.89223 0.88745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.88 9.29 71.98 0.67 -5.21 16 2 C 0.28 12.95 2.75 44.25 0.12 13.07 16 3 H 0.02 1.16 7.62 -2.38 -0.02 1.14 16 4 C -0.55 -29.73 8.84 25.60 0.23 -29.50 16 5 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 6 C 0.02 1.08 5.30 84.65 0.45 1.53 16 7 N -0.91 -49.80 11.32 21.45 0.24 -49.56 16 8 Si 0.95 43.47 29.54 68.60 2.03 45.50 16 9 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 10 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 12 N -1.10 -43.27 4.97 -172.51 -0.86 -44.13 16 13 S 2.61 96.44 4.75 -56.49 -0.27 96.17 16 14 O -1.01 -47.11 17.70 -127.65 -2.26 -49.37 16 15 O -0.99 -38.49 17.94 -127.65 -2.29 -40.78 16 16 C -0.61 -16.40 2.91 30.65 0.09 -16.31 16 17 H 0.14 3.80 8.00 -2.39 -0.02 3.78 16 18 C -0.12 -2.65 5.29 30.67 0.16 -2.49 16 19 C -0.14 -2.38 6.08 30.65 0.19 -2.20 16 20 C 0.05 0.80 6.56 86.33 0.57 1.37 16 21 N -0.67 -13.58 6.87 -513.99 -3.53 -17.11 16 22 C 0.08 1.87 5.71 86.32 0.49 2.36 16 23 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.07 3.29 6.07 -2.38 -0.01 3.28 16 25 H 0.05 1.67 7.28 -2.39 -0.02 1.65 16 26 H 0.27 13.85 8.31 -92.71 -0.77 13.08 16 27 H 0.41 14.72 8.92 -96.75 -0.86 13.86 16 28 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.35 6.59 8.86 -89.70 -0.79 5.79 16 35 H 0.09 2.11 8.08 -2.39 -0.02 2.09 16 36 H 0.09 2.29 7.08 -2.39 -0.02 2.27 16 Total: -1.00 -67.62 302.15 -4.54 -72.16 By element: Atomic # 1 Polarization: 25.05 SS G_CDS: -0.57 Total: 24.48 kcal Atomic # 6 Polarization: -40.33 SS G_CDS: 2.96 Total: -37.37 kcal Atomic # 7 Polarization: -106.66 SS G_CDS: -4.14 Total: -110.80 kcal Atomic # 8 Polarization: -85.60 SS G_CDS: -4.55 Total: -90.15 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: 96.44 SS G_CDS: -0.27 Total: 96.17 kcal Total: -67.62 -4.54 -72.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722265194.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.142 kcal (2) G-P(sol) polarization free energy of solvation -67.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds