Wall clock time and date at job start Mon Mar 30 2020 05:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08990 * 109.47184 * 2 1 4 4 C 1.50700 * 109.46821 * 239.99859 * 2 1 3 5 5 H 1.08006 * 120.00192 * 240.00123 * 4 2 1 6 6 C 1.37884 * 119.99774 * 60.00259 * 4 2 1 7 7 N 1.31509 * 119.99881 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99827 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47222 * 60.00283 * 8 6 4 10 10 H 1.48500 * 109.46723 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47211 * 300.00357 * 8 6 4 12 12 N 1.46503 * 109.47081 * 120.00728 * 2 1 3 13 13 S 1.65604 * 119.99526 * 264.99511 * 12 2 1 14 14 O 1.42097 * 104.27957 * 308.92871 * 13 12 2 15 15 O 1.42097 * 104.27782 * 181.07299 * 13 12 2 16 16 C 1.81398 * 104.44802 * 65.00005 * 13 12 2 17 17 H 1.08999 * 109.53785 * 300.09639 * 16 13 12 18 18 C 1.53124 * 109.50132 * 180.02562 * 16 13 12 19 19 C 1.53126 * 109.15878 * 182.40552 * 18 16 13 20 20 C 1.53037 * 109.27801 * 57.65645 * 19 18 16 21 21 N 1.46854 * 109.51886 * 300.81620 * 20 19 18 22 22 C 1.46844 * 111.19703 * 61.74789 * 21 20 19 23 23 H 1.09004 * 109.47260 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46841 * 299.99956 * 1 2 3 25 25 H 1.08994 * 109.46981 * 59.99676 * 1 2 3 26 26 H 0.97005 * 119.99644 * 180.02562 * 7 6 4 27 27 H 0.96997 * 120.00382 * 84.99178 * 12 2 1 28 28 H 1.08998 * 109.52745 * 62.49880 * 18 16 13 29 29 H 1.08999 * 109.52030 * 302.30336 * 18 16 13 30 30 H 1.09000 * 109.49775 * 177.59563 * 19 18 16 31 31 H 1.09002 * 109.50346 * 297.67261 * 19 18 16 32 32 H 1.08994 * 109.46593 * 60.83220 * 20 19 18 33 33 H 1.09004 * 109.46132 * 180.80891 * 20 19 18 34 34 H 1.00899 * 110.99958 * 297.64483 * 21 20 19 35 35 H 1.09002 * 109.46133 * 58.27161 * 22 21 20 36 36 H 1.09002 * 109.46165 * 178.24800 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6033 8 14 2.3223 -1.1195 -4.0080 9 1 1.8277 -2.5198 -4.0083 10 1 1.8277 -0.4191 -5.2204 11 1 3.8073 -1.1191 -4.0078 12 7 2.0183 -0.6908 1.1961 13 16 2.4123 0.1770 2.5505 14 8 3.2876 1.1904 2.0751 15 8 2.8607 -0.8031 3.4765 16 6 0.8409 0.8987 3.0985 17 1 0.4370 1.5340 2.3102 18 6 1.0749 1.7357 4.3592 19 6 -0.2651 2.2918 4.8491 20 6 -1.2275 1.1315 5.1128 21 7 -1.4190 0.3622 3.8766 22 6 -0.1537 -0.2211 3.4129 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 0.7089 1.1615 -3.4844 27 1 2.1109 -1.6563 1.1948 28 1 1.7492 2.5605 4.1289 29 1 1.5151 1.1098 5.1354 30 1 -0.1109 2.8533 5.7706 31 1 -0.6863 2.9491 4.0885 32 1 -0.8117 0.4827 5.8836 33 1 -2.1873 1.5248 5.4481 34 1 -1.8396 0.9318 3.1578 35 1 0.2570 -0.8636 4.1917 36 1 -0.3334 -0.8101 2.5134 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722265196.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:21 Heat of formation + Delta-G solvation = -85.583648 kcal Electronic energy + Delta-G solvation = -19137.005486 eV Core-core repulsion = 16168.543097 eV Total energy + Delta-G solvation = -2968.462389 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.75622 -36.61047 -35.55129 -35.40293 -32.25964 -31.98307 -31.07261 -28.33811 -25.33317 -23.89241 -23.31945 -21.01832 -20.67095 -18.66934 -17.46824 -16.73141 -16.05965 -15.71800 -15.52620 -14.96701 -14.77517 -14.42344 -13.66352 -13.46841 -13.11778 -12.74460 -12.39190 -12.22328 -11.99964 -11.75124 -11.61124 -11.52712 -11.45350 -11.25732 -11.11346 -10.99976 -10.83061 -10.65405 -10.40384 -10.17546 -10.02529 -9.24991 -8.66949 -8.49012 -8.26285 -6.15788 -4.22315 0.78621 3.27035 3.31428 3.32924 3.42430 4.15376 4.23524 4.34671 4.48084 4.53447 4.72044 4.88934 5.14408 5.18079 5.27434 5.30616 5.40260 5.62571 5.72135 5.76107 5.81775 5.90185 6.06973 6.28042 6.67248 6.70846 6.85819 6.92603 7.28914 7.51643 7.61981 7.84639 7.97126 8.23601 8.80185 9.43726 10.90573 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.030003 B = 0.006392 C = 0.005812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.024822 B = 4379.174379 C = 4816.265054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.266 3.734 3 H 0.049 0.951 4 C -0.520 4.520 5 H 0.064 0.936 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -1.100 6.100 13 S 2.613 3.387 14 O -0.960 6.960 15 O -0.978 6.978 16 C -0.638 4.638 17 H 0.140 0.860 18 C -0.106 4.106 19 C -0.148 4.148 20 C 0.053 3.947 21 N -0.674 5.674 22 C 0.078 3.922 23 H 0.037 0.963 24 H 0.012 0.988 25 H 0.094 0.906 26 H 0.265 0.735 27 H 0.409 0.591 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.345 0.655 35 H 0.085 0.915 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.927 1.489 12.116 13.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.162 3.838 3 H 0.067 0.933 4 C -0.559 4.559 5 H 0.082 0.918 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.201 1.201 12 N -0.861 5.861 13 S 2.703 3.297 14 O -0.950 6.950 15 O -0.969 6.969 16 C -0.747 4.747 17 H 0.158 0.842 18 C -0.145 4.145 19 C -0.189 4.189 20 C -0.077 4.077 21 N -0.302 5.302 22 C -0.053 4.053 23 H 0.057 0.943 24 H 0.031 0.969 25 H 0.113 0.887 26 H 0.075 0.925 27 H 0.242 0.758 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.163 0.837 35 H 0.104 0.896 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.383 1.327 12.674 13.476 hybrid contribution 0.107 0.254 -1.413 1.440 sum -4.276 1.581 11.260 12.148 Atomic orbital electron populations 1.22417 0.98666 1.00230 1.00810 1.18604 0.90570 0.93143 0.81524 0.93341 1.21174 1.31839 1.13126 0.89785 0.91775 1.24913 0.94870 0.95016 0.99115 1.69837 1.36341 1.22621 1.24064 0.86489 0.79323 0.79567 0.81629 1.20150 1.21188 1.20119 1.55529 1.83909 1.19105 1.27514 1.04809 0.76338 0.74779 0.73734 1.93581 1.60529 1.61514 1.79337 1.93518 1.79879 1.58786 1.64680 1.31323 1.24539 1.10847 1.08028 0.84206 1.21342 0.99201 0.99262 0.94656 1.22152 0.95897 0.99057 1.01752 1.22078 0.98704 0.93667 0.93227 1.60625 1.23589 1.38633 1.07340 1.21868 0.87563 0.93527 1.02343 0.94338 0.96904 0.88711 0.92532 0.75765 0.90452 0.90646 0.90971 0.91462 0.90746 0.90567 0.83711 0.89625 0.88362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.39 8.59 37.16 0.32 -3.07 16 2 C 0.27 6.17 2.80 -69.08 -0.19 5.98 16 3 H 0.05 1.25 7.48 -51.93 -0.39 0.86 16 4 C -0.52 -13.54 8.76 -34.44 -0.30 -13.84 16 5 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -24.01 11.32 55.43 0.63 -23.39 16 8 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 9 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 N -1.10 -21.60 5.07 -5.88 -0.03 -21.63 16 13 S 2.61 47.61 4.88 -107.50 -0.52 47.09 16 14 O -0.96 -21.31 17.39 -57.54 -1.00 -22.31 16 15 O -0.98 -18.97 17.93 -57.54 -1.03 -20.00 16 16 C -0.64 -9.09 2.30 -26.65 -0.06 -9.15 16 17 H 0.14 2.01 6.77 -51.93 -0.35 1.66 16 18 C -0.11 -1.30 5.29 -26.60 -0.14 -1.44 16 19 C -0.15 -1.49 6.08 -26.65 -0.16 -1.65 16 20 C 0.05 0.53 6.55 -3.83 -0.03 0.51 16 21 N -0.67 -7.97 6.87 -113.81 -0.78 -8.76 16 22 C 0.08 1.04 5.27 -3.84 -0.02 1.02 16 23 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.01 0.21 4.81 -51.93 -0.25 -0.04 16 25 H 0.09 2.25 6.07 -51.93 -0.32 1.93 16 26 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 27 H 0.41 7.43 8.79 -34.47 -0.30 7.13 16 28 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.34 3.90 8.86 -39.29 -0.35 3.55 16 35 H 0.09 1.13 8.08 -51.93 -0.42 0.71 16 36 H 0.10 1.36 6.61 -51.93 -0.34 1.02 16 LS Contribution 295.83 15.07 4.46 4.46 Total: -1.00 -30.80 295.83 -9.21 -40.01 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -5.22 Total: 9.03 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: -0.68 Total: -20.08 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: -0.18 Total: -53.77 kcal Atomic # 8 Polarization: -40.28 SS G_CDS: -2.03 Total: -42.31 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 47.61 SS G_CDS: -0.52 Total: 47.09 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.80 -9.21 -40.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722265196.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.576 kcal (2) G-P(sol) polarization free energy of solvation -30.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds