Wall clock time and date at job start Mon Mar 30 2020 05:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08990 * 109.47184 * 2 1 4 4 C 1.50700 * 109.46821 * 239.99859 * 2 1 3 5 5 H 1.08006 * 120.00192 * 240.00123 * 4 2 1 6 6 C 1.37884 * 119.99774 * 60.00259 * 4 2 1 7 7 N 1.31509 * 119.99881 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99827 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47222 * 60.00283 * 8 6 4 10 10 H 1.48500 * 109.46723 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47211 * 300.00357 * 8 6 4 12 12 N 1.46503 * 109.47081 * 120.00728 * 2 1 3 13 13 S 1.65604 * 119.99526 * 264.99511 * 12 2 1 14 14 O 1.42097 * 104.27957 * 308.92871 * 13 12 2 15 15 O 1.42097 * 104.27782 * 181.07299 * 13 12 2 16 16 C 1.81398 * 104.44802 * 65.00005 * 13 12 2 17 17 H 1.08999 * 109.53785 * 300.09639 * 16 13 12 18 18 C 1.53124 * 109.50132 * 180.02562 * 16 13 12 19 19 C 1.53126 * 109.15878 * 182.40552 * 18 16 13 20 20 C 1.53037 * 109.27801 * 57.65645 * 19 18 16 21 21 N 1.46854 * 109.51886 * 300.81620 * 20 19 18 22 22 C 1.46844 * 111.19703 * 61.74789 * 21 20 19 23 23 H 1.09004 * 109.47260 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46841 * 299.99956 * 1 2 3 25 25 H 1.08994 * 109.46981 * 59.99676 * 1 2 3 26 26 H 0.97005 * 119.99644 * 180.02562 * 7 6 4 27 27 H 0.96997 * 120.00382 * 84.99178 * 12 2 1 28 28 H 1.08998 * 109.52745 * 62.49880 * 18 16 13 29 29 H 1.08999 * 109.52030 * 302.30336 * 18 16 13 30 30 H 1.09000 * 109.49775 * 177.59563 * 19 18 16 31 31 H 1.09002 * 109.50346 * 297.67261 * 19 18 16 32 32 H 1.08994 * 109.46593 * 60.83220 * 20 19 18 33 33 H 1.09004 * 109.46132 * 180.80891 * 20 19 18 34 34 H 1.00899 * 110.99958 * 297.64483 * 21 20 19 35 35 H 1.09002 * 109.46133 * 58.27161 * 22 21 20 36 36 H 1.09002 * 109.46165 * 178.24800 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6033 8 14 2.3223 -1.1195 -4.0080 9 1 1.8277 -2.5198 -4.0083 10 1 1.8277 -0.4191 -5.2204 11 1 3.8073 -1.1191 -4.0078 12 7 2.0183 -0.6908 1.1961 13 16 2.4123 0.1770 2.5505 14 8 3.2876 1.1904 2.0751 15 8 2.8607 -0.8031 3.4765 16 6 0.8409 0.8987 3.0985 17 1 0.4370 1.5340 2.3102 18 6 1.0749 1.7357 4.3592 19 6 -0.2651 2.2918 4.8491 20 6 -1.2275 1.1315 5.1128 21 7 -1.4190 0.3622 3.8766 22 6 -0.1537 -0.2211 3.4129 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 0.7089 1.1615 -3.4844 27 1 2.1109 -1.6563 1.1948 28 1 1.7492 2.5605 4.1289 29 1 1.5151 1.1098 5.1354 30 1 -0.1109 2.8533 5.7706 31 1 -0.6863 2.9491 4.0885 32 1 -0.8117 0.4827 5.8836 33 1 -2.1873 1.5248 5.4481 34 1 -1.8396 0.9318 3.1578 35 1 0.2570 -0.8636 4.1917 36 1 -0.3334 -0.8101 2.5134 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722265196.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:21 Heat of formation + Delta-G solvation = -110.806677 kcal Electronic energy + Delta-G solvation = -19138.099238 eV Core-core repulsion = 16168.543097 eV Total energy + Delta-G solvation = -2969.556142 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.73471 -38.19442 -37.28032 -37.00613 -34.14708 -32.98157 -32.05676 -30.07879 -27.25357 -24.87571 -24.33954 -22.77003 -21.69378 -20.17491 -19.15658 -18.16767 -17.58766 -17.23513 -16.72763 -16.56311 -15.83715 -15.62299 -15.34861 -14.53073 -14.48461 -14.11858 -13.98852 -13.56355 -13.34842 -13.22736 -13.13650 -13.07571 -12.85621 -12.78557 -12.44629 -12.38072 -12.24473 -12.14716 -11.97380 -11.75849 -11.28037 -11.10116 -10.57480 -10.04860 -9.40010 -8.15174 -6.28095 -0.66762 1.44867 1.46266 1.53322 1.89124 2.43947 2.79901 3.13603 3.15644 3.30662 3.43154 3.75038 3.88057 4.06346 4.24173 4.37176 4.49519 4.55478 4.70669 4.78927 4.82598 4.90571 4.93834 5.02012 5.06291 5.17914 5.24977 5.59016 5.79465 5.94773 6.06876 6.14938 6.41376 6.43117 6.81735 7.41024 8.89728 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.030003 B = 0.006392 C = 0.005812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.024822 B = 4379.174379 C = 4816.265054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.270 3.730 3 H 0.017 0.983 4 C -0.544 4.544 5 H 0.060 0.940 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.959 3.041 9 H -0.267 1.267 10 H -0.282 1.282 11 H -0.279 1.279 12 N -1.103 6.103 13 S 2.612 3.388 14 O -1.008 7.008 15 O -0.992 6.992 16 C -0.607 4.607 17 H 0.142 0.858 18 C -0.116 4.116 19 C -0.142 4.142 20 C 0.050 3.950 21 N -0.674 5.674 22 C 0.077 3.923 23 H 0.043 0.957 24 H 0.046 0.954 25 H 0.068 0.932 26 H 0.266 0.734 27 H 0.414 0.586 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.349 0.651 35 H 0.089 0.911 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.323 1.459 13.289 14.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.165 3.835 3 H 0.035 0.965 4 C -0.583 4.583 5 H 0.078 0.922 6 C -0.182 4.182 7 N -0.551 5.551 8 Si 0.785 3.215 9 H -0.192 1.192 10 H -0.207 1.207 11 H -0.204 1.204 12 N -0.862 5.862 13 S 2.708 3.292 14 O -0.998 6.998 15 O -0.982 6.982 16 C -0.722 4.722 17 H 0.160 0.840 18 C -0.155 4.155 19 C -0.182 4.182 20 C -0.080 4.080 21 N -0.303 5.303 22 C -0.054 4.054 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.087 0.913 26 H 0.075 0.925 27 H 0.248 0.752 28 H 0.096 0.904 29 H 0.102 0.898 30 H 0.114 0.886 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.116 0.884 34 H 0.168 0.832 35 H 0.108 0.892 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.735 1.264 13.833 15.028 hybrid contribution 0.514 0.299 -1.661 1.765 sum -5.221 1.563 12.172 13.336 Atomic orbital electron populations 1.22207 0.96783 1.00673 1.01170 1.18328 0.91891 0.91405 0.81903 0.96532 1.21570 1.32043 1.13344 0.91352 0.92153 1.25632 0.95118 0.95722 1.01693 1.69950 1.37016 1.23517 1.24572 0.85597 0.78424 0.78948 0.78561 1.19222 1.20710 1.20447 1.55328 1.84160 1.19354 1.27392 1.04686 0.77471 0.73962 0.73036 1.93518 1.63739 1.62415 1.80108 1.93490 1.81108 1.59302 1.64338 1.31060 1.20618 1.11393 1.09152 0.83991 1.21556 1.01103 0.99207 0.93662 1.22158 0.94038 0.99189 1.02832 1.22220 0.99899 0.93528 0.92324 1.60657 1.22107 1.39421 1.08086 1.21905 0.87965 0.93099 1.02448 0.93754 0.93510 0.91311 0.92508 0.75180 0.90404 0.89837 0.88597 0.91235 0.90406 0.88401 0.83229 0.89233 0.88888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.19 8.59 71.98 0.62 -5.57 16 2 C 0.27 12.73 2.80 44.24 0.12 12.86 16 3 H 0.02 0.90 7.48 -2.39 -0.02 0.88 16 4 C -0.54 -28.74 8.76 25.60 0.22 -28.51 16 5 H 0.06 3.14 7.81 -2.91 -0.02 3.12 16 6 C 0.02 0.99 5.30 84.66 0.45 1.44 16 7 N -0.91 -49.70 11.32 21.45 0.24 -49.45 16 8 Si 0.96 42.31 29.54 68.60 2.03 44.34 16 9 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 10 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 11 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 12 N -1.10 -43.77 5.07 -172.53 -0.88 -44.64 16 13 S 2.61 95.56 4.88 -56.49 -0.28 95.29 16 14 O -1.01 -45.99 17.39 -127.65 -2.22 -48.21 16 15 O -0.99 -38.27 17.93 -127.65 -2.29 -40.56 16 16 C -0.61 -16.39 2.30 30.65 0.07 -16.32 16 17 H 0.14 3.85 6.77 -2.39 -0.02 3.84 16 18 C -0.12 -2.59 5.29 30.68 0.16 -2.43 16 19 C -0.14 -2.34 6.08 30.65 0.19 -2.16 16 20 C 0.05 0.81 6.55 86.32 0.57 1.37 16 21 N -0.67 -13.86 6.87 -514.00 -3.53 -17.39 16 22 C 0.08 1.89 5.27 86.33 0.45 2.34 16 23 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.05 1.56 4.81 -2.38 -0.01 1.55 16 25 H 0.07 3.26 6.07 -2.39 -0.01 3.25 16 26 H 0.27 13.80 8.31 -92.70 -0.77 13.03 16 27 H 0.41 15.21 8.79 -96.75 -0.85 14.36 16 28 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.35 6.76 8.86 -89.69 -0.79 5.97 16 35 H 0.09 2.15 8.08 -2.39 -0.02 2.13 16 36 H 0.09 2.39 6.61 -2.39 -0.02 2.37 16 Total: -1.00 -66.23 295.83 -4.61 -70.84 By element: Atomic # 1 Polarization: 27.30 SS G_CDS: -0.55 Total: 26.75 kcal Atomic # 6 Polarization: -39.82 SS G_CDS: 2.85 Total: -36.97 kcal Atomic # 7 Polarization: -107.32 SS G_CDS: -4.16 Total: -111.48 kcal Atomic # 8 Polarization: -84.26 SS G_CDS: -4.51 Total: -88.77 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Atomic # 16 Polarization: 95.56 SS G_CDS: -0.28 Total: 95.29 kcal Total: -66.23 -4.61 -70.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722265196.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.965 kcal (2) G-P(sol) polarization free energy of solvation -66.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds