Wall clock time and date at job start Mon Mar 30 2020 05:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47515 * 2 1 4 4 C 1.50706 * 109.47208 * 119.99847 * 2 1 3 5 5 H 1.08000 * 119.99881 * 120.00297 * 4 2 1 6 6 C 1.37879 * 120.00019 * 299.99584 * 4 2 1 7 7 N 1.31506 * 119.99864 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 119.99755 * 0.02562 * 6 4 2 9 9 H 1.48495 * 109.47192 * 89.99711 * 8 6 4 10 10 H 1.48507 * 109.46683 * 209.99420 * 8 6 4 11 11 H 1.48501 * 109.47142 * 329.99222 * 8 6 4 12 12 N 1.46500 * 109.47258 * 239.99809 * 2 1 3 13 13 S 1.65601 * 119.99871 * 95.00173 * 12 2 1 14 14 O 1.42102 * 104.27544 * 308.92828 * 13 12 2 15 15 O 1.42096 * 104.27534 * 181.07324 * 13 12 2 16 16 C 1.81389 * 104.45298 * 64.99884 * 13 12 2 17 17 C 1.53002 * 109.47310 * 179.97438 * 16 13 12 18 18 H 1.09003 * 110.64497 * 51.85060 * 17 16 13 19 19 C 1.54594 * 110.72302 * 174.99982 * 17 16 13 20 20 C 1.53998 * 105.13885 * 140.49641 * 19 17 16 21 21 N 1.47902 * 107.05813 * 1.22537 * 20 19 17 22 22 C 1.48536 * 105.81944 * 334.66802 * 21 20 19 23 23 H 1.09005 * 109.46644 * 300.00017 * 1 2 3 24 24 H 1.08997 * 109.47281 * 60.00238 * 1 2 3 25 25 H 1.09005 * 109.47169 * 180.02562 * 1 2 3 26 26 H 0.97002 * 119.99947 * 180.02562 * 7 6 4 27 27 H 0.97002 * 120.00140 * 274.99687 * 12 2 1 28 28 H 1.09007 * 109.47337 * 60.00188 * 16 13 12 29 29 H 1.09002 * 109.47506 * 300.00174 * 16 13 12 30 30 H 1.08999 * 110.31149 * 21.58139 * 19 17 16 31 31 H 1.09000 * 110.31521 * 259.41017 * 19 17 16 32 32 H 1.09002 * 109.91633 * 241.87103 * 20 19 17 33 33 H 1.09006 * 110.08304 * 120.66902 * 20 19 17 34 34 H 1.00901 * 111.00008 * 95.18016 * 21 20 19 35 35 H 1.08997 * 110.67070 * 157.63763 * 22 21 20 36 36 H 1.09002 * 110.66872 * 280.77469 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 2.1373 -0.8595 3.5565 8 14 0.6249 1.2792 2.6541 9 1 -0.8027 0.8729 2.6998 10 1 0.9761 1.9952 3.9069 11 1 0.8472 2.1766 1.4920 12 7 2.0183 -0.6906 -1.1961 13 16 2.4122 0.1771 -2.5505 14 8 1.2751 0.9966 -2.7846 15 8 2.8122 -0.8076 -3.4935 16 6 3.8312 1.1872 -2.0441 17 6 4.2941 2.0443 -3.2240 18 1 3.4566 2.5974 -3.6491 19 6 5.4224 3.0081 -2.7905 20 6 6.4151 3.0205 -3.9677 21 7 5.8575 2.1372 -5.0148 22 6 4.9801 1.1716 -4.3049 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.9027 -0.5282 4.4376 27 1 2.1110 -1.6562 -1.1948 28 1 4.6459 0.5362 -1.7268 29 1 3.5399 1.8343 -1.2167 30 1 5.9100 2.6385 -1.8884 31 1 5.0223 4.0080 -2.6226 32 1 7.3839 2.6429 -3.6405 33 1 6.5234 4.0336 -4.3554 34 1 5.3347 2.6683 -5.6951 35 1 4.2404 0.7511 -4.9861 36 1 5.5721 0.3816 -3.8428 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722266243.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:04 Heat of formation + Delta-G solvation = -72.740806 kcal Electronic energy + Delta-G solvation = -18701.010742 eV Core-core repulsion = 15733.105261 eV Total energy + Delta-G solvation = -2967.905482 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.91452 -36.76829 -35.77807 -35.52228 -32.42793 -32.30124 -29.41679 -29.23482 -26.02868 -25.17920 -21.95947 -21.13741 -20.47908 -18.94541 -17.71129 -17.10008 -16.20785 -15.98450 -15.86955 -15.16897 -14.58277 -14.44338 -13.91323 -13.63790 -13.18760 -12.59572 -12.49319 -12.42202 -12.29399 -12.18374 -11.90825 -11.72228 -11.61864 -11.55211 -11.26521 -11.21360 -10.78797 -10.74849 -10.32923 -10.24772 -9.63169 -9.39894 -8.89795 -8.88027 -8.52690 -6.27090 -4.29975 0.66644 3.16169 3.22124 3.26918 3.27997 3.92395 4.11836 4.22648 4.29330 4.50471 4.55138 4.81247 4.95790 5.04467 5.14025 5.18005 5.37084 5.46090 5.66749 5.71711 5.82919 5.84365 5.92874 6.04355 6.18258 6.47656 6.47907 6.56856 6.91761 7.11405 7.18713 7.34312 7.81852 8.30977 8.75270 9.32277 10.85196 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.026558 B = 0.006207 C = 0.005666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.056425 B = 4510.234089 C = 4940.262944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.246 3.754 3 H 0.035 0.965 4 C -0.531 4.531 5 H 0.084 0.916 6 C 0.076 3.924 7 N -0.890 5.890 8 Si 0.882 3.118 9 H -0.274 1.274 10 H -0.294 1.294 11 H -0.265 1.265 12 N -1.096 6.096 13 S 2.607 3.393 14 O -0.964 6.964 15 O -0.971 6.971 16 C -0.623 4.623 17 C -0.116 4.116 18 H 0.087 0.913 19 C -0.141 4.141 20 C 0.040 3.960 21 N -0.672 5.672 22 C 0.032 3.968 23 H 0.046 0.954 24 H 0.047 0.953 25 H 0.059 0.941 26 H 0.268 0.732 27 H 0.414 0.586 28 H 0.137 0.863 29 H 0.136 0.864 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.338 0.662 35 H 0.086 0.914 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.033 7.339 -11.916 14.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.140 3.860 3 H 0.053 0.947 4 C -0.570 4.570 5 H 0.102 0.898 6 C -0.128 4.128 7 N -0.527 5.527 8 Si 0.712 3.288 9 H -0.200 1.200 10 H -0.221 1.221 11 H -0.190 1.190 12 N -0.855 5.855 13 S 2.699 3.301 14 O -0.954 6.954 15 O -0.961 6.961 16 C -0.751 4.751 17 C -0.137 4.137 18 H 0.105 0.895 19 C -0.181 4.181 20 C -0.090 4.090 21 N -0.299 5.299 22 C -0.098 4.098 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.249 0.751 28 H 0.155 0.845 29 H 0.154 0.846 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.153 0.847 35 H 0.105 0.895 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.189 7.048 -12.644 15.378 hybrid contribution -0.908 1.174 1.332 1.994 sum 4.281 8.222 -11.312 14.625 Atomic orbital electron populations 1.22601 0.98900 1.01737 0.99794 1.18863 0.90778 0.92388 0.83984 0.94729 1.21132 1.33071 1.14602 0.88210 0.89808 1.24911 0.95460 0.96737 0.95675 1.69865 1.44783 1.39985 0.98073 0.86950 0.81092 0.83491 0.77310 1.20018 1.22089 1.18990 1.55347 1.80969 1.18871 1.30360 1.04876 0.76336 0.75110 0.73821 1.93574 1.45979 1.71372 1.84495 1.93554 1.84650 1.57517 1.60419 1.30643 1.21931 1.14583 1.07978 1.22492 0.99515 0.97061 0.94647 0.89496 1.22849 0.95834 0.99442 1.00010 1.22782 0.98708 0.96572 0.90943 1.62697 1.35662 1.17474 1.14022 1.23521 0.95665 0.95720 0.94877 0.93519 0.93372 0.92228 0.92242 0.75131 0.84466 0.84612 0.90198 0.90944 0.90329 0.91434 0.84718 0.89545 0.88863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.71 9.00 37.16 0.33 -3.38 16 2 C 0.25 5.41 2.25 -69.08 -0.16 5.25 16 3 H 0.04 0.74 6.21 -51.93 -0.32 0.42 16 4 C -0.53 -13.68 9.34 -34.44 -0.32 -14.00 16 5 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 6 C 0.08 2.05 5.45 -17.82 -0.10 1.95 16 7 N -0.89 -25.58 13.96 55.43 0.77 -24.81 16 8 Si 0.88 20.59 24.37 -169.99 -4.14 16.45 16 9 H -0.27 -6.27 6.87 56.52 0.39 -5.89 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.26 -5.86 6.53 56.52 0.37 -5.49 16 12 N -1.10 -20.50 5.35 -5.88 -0.03 -20.53 16 13 S 2.61 43.41 5.23 -107.50 -0.56 42.84 16 14 O -0.96 -18.69 17.11 -57.54 -0.98 -19.67 16 15 O -0.97 -17.26 17.03 -57.54 -0.98 -18.24 16 16 C -0.62 -8.42 5.32 37.16 0.20 -8.23 16 17 C -0.12 -1.38 3.02 -88.76 -0.27 -1.65 16 18 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 19 C -0.14 -1.45 6.51 -25.37 -0.17 -1.62 16 20 C 0.04 0.37 7.52 -2.75 -0.02 0.35 16 21 N -0.67 -7.10 7.51 -110.08 -0.83 -7.93 16 22 C 0.03 0.38 6.19 -1.90 -0.01 0.37 16 23 H 0.05 1.03 3.27 -51.93 -0.17 0.86 16 24 H 0.05 0.98 7.42 -51.93 -0.39 0.59 16 25 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 26 H 0.27 7.22 8.31 -40.82 -0.34 6.89 16 27 H 0.41 7.30 8.79 -34.47 -0.30 6.99 16 28 H 0.14 1.69 8.00 -51.92 -0.42 1.27 16 29 H 0.14 1.82 7.44 -51.92 -0.39 1.44 16 30 H 0.08 0.83 7.85 -51.93 -0.41 0.42 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.34 2.98 8.92 -39.29 -0.35 2.63 16 35 H 0.09 1.04 7.72 -51.93 -0.40 0.64 16 36 H 0.09 1.14 7.95 -51.93 -0.41 0.73 16 LS Contribution 296.32 15.07 4.47 4.47 Total: -1.00 -31.31 296.32 -8.07 -39.38 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -5.27 Total: 8.99 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: -0.51 Total: -20.94 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: -0.08 Total: -53.27 kcal Atomic # 8 Polarization: -35.95 SS G_CDS: -1.96 Total: -37.91 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.14 Total: 16.45 kcal Atomic # 16 Polarization: 43.41 SS G_CDS: -0.56 Total: 42.84 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.31 -8.07 -39.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722266243.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.363 kcal (2) G-P(sol) polarization free energy of solvation -31.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds