Wall clock time and date at job start Mon Mar 30 2020 05:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47515 * 2 1 4 4 C 1.50706 * 109.47208 * 119.99847 * 2 1 3 5 5 H 1.08000 * 119.99881 * 120.00297 * 4 2 1 6 6 C 1.37879 * 120.00019 * 299.99584 * 4 2 1 7 7 N 1.31506 * 119.99864 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 119.99755 * 0.02562 * 6 4 2 9 9 H 1.48495 * 109.47192 * 89.99711 * 8 6 4 10 10 H 1.48507 * 109.46683 * 209.99420 * 8 6 4 11 11 H 1.48501 * 109.47142 * 329.99222 * 8 6 4 12 12 N 1.46500 * 109.47258 * 239.99809 * 2 1 3 13 13 S 1.65601 * 119.99871 * 95.00173 * 12 2 1 14 14 O 1.42102 * 104.27544 * 308.92828 * 13 12 2 15 15 O 1.42096 * 104.27534 * 181.07324 * 13 12 2 16 16 C 1.81389 * 104.45298 * 64.99884 * 13 12 2 17 17 C 1.53002 * 109.47310 * 179.97438 * 16 13 12 18 18 H 1.09003 * 110.64497 * 51.85060 * 17 16 13 19 19 C 1.54594 * 110.72302 * 174.99982 * 17 16 13 20 20 C 1.53998 * 105.13885 * 140.49641 * 19 17 16 21 21 N 1.47902 * 107.05813 * 1.22537 * 20 19 17 22 22 C 1.48536 * 105.81944 * 334.66802 * 21 20 19 23 23 H 1.09005 * 109.46644 * 300.00017 * 1 2 3 24 24 H 1.08997 * 109.47281 * 60.00238 * 1 2 3 25 25 H 1.09005 * 109.47169 * 180.02562 * 1 2 3 26 26 H 0.97002 * 119.99947 * 180.02562 * 7 6 4 27 27 H 0.97002 * 120.00140 * 274.99687 * 12 2 1 28 28 H 1.09007 * 109.47337 * 60.00188 * 16 13 12 29 29 H 1.09002 * 109.47506 * 300.00174 * 16 13 12 30 30 H 1.08999 * 110.31149 * 21.58139 * 19 17 16 31 31 H 1.09000 * 110.31521 * 259.41017 * 19 17 16 32 32 H 1.09002 * 109.91633 * 241.87103 * 20 19 17 33 33 H 1.09006 * 110.08304 * 120.66902 * 20 19 17 34 34 H 1.00901 * 111.00008 * 95.18016 * 21 20 19 35 35 H 1.08997 * 110.67070 * 157.63763 * 22 21 20 36 36 H 1.09002 * 110.66872 * 280.77469 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 2.1373 -0.8595 3.5565 8 14 0.6249 1.2792 2.6541 9 1 -0.8027 0.8729 2.6998 10 1 0.9761 1.9952 3.9069 11 1 0.8472 2.1766 1.4920 12 7 2.0183 -0.6906 -1.1961 13 16 2.4122 0.1771 -2.5505 14 8 1.2751 0.9966 -2.7846 15 8 2.8122 -0.8076 -3.4935 16 6 3.8312 1.1872 -2.0441 17 6 4.2941 2.0443 -3.2240 18 1 3.4566 2.5974 -3.6491 19 6 5.4224 3.0081 -2.7905 20 6 6.4151 3.0205 -3.9677 21 7 5.8575 2.1372 -5.0148 22 6 4.9801 1.1716 -4.3049 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.9027 -0.5282 4.4376 27 1 2.1110 -1.6562 -1.1948 28 1 4.6459 0.5362 -1.7268 29 1 3.5399 1.8343 -1.2167 30 1 5.9100 2.6385 -1.8884 31 1 5.0223 4.0080 -2.6226 32 1 7.3839 2.6429 -3.6405 33 1 6.5234 4.0336 -4.3554 34 1 5.3347 2.6683 -5.6951 35 1 4.2404 0.7511 -4.9861 36 1 5.5721 0.3816 -3.8428 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722266243.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:04 Heat of formation + Delta-G solvation = -99.470403 kcal Electronic energy + Delta-G solvation = -18702.169825 eV Core-core repulsion = 15733.105261 eV Total energy + Delta-G solvation = -2969.064564 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.76807 -38.21073 -37.42887 -36.96340 -34.25912 -33.38822 -30.94090 -30.20561 -27.15233 -26.99972 -22.90223 -22.79421 -21.39525 -20.33900 -19.29396 -18.23737 -17.79693 -17.49164 -17.08672 -16.61790 -15.71953 -15.51029 -15.23369 -14.97521 -14.71359 -14.24076 -14.01487 -13.68678 -13.51516 -13.36974 -13.18826 -13.14431 -13.06586 -12.91893 -12.49284 -12.40174 -12.17594 -12.08293 -11.62338 -11.52703 -11.46672 -11.15837 -10.85220 -10.18655 -9.68355 -8.32735 -6.39132 -0.65528 1.33845 1.37497 1.46771 1.83998 2.29455 2.77311 3.01976 3.13399 3.22520 3.42705 3.64995 3.81723 4.13174 4.16427 4.25750 4.35116 4.43148 4.47292 4.58105 4.72322 4.72813 4.86835 4.90422 4.99306 5.07439 5.19137 5.21364 5.45819 5.47453 5.67488 6.25273 6.29086 6.40432 6.68698 7.26848 8.82871 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.026558 B = 0.006207 C = 0.005666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.056425 B = 4510.234089 C = 4940.262944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.246 3.754 3 H 0.049 0.951 4 C -0.528 4.528 5 H 0.053 0.947 6 C 0.024 3.976 7 N -0.938 5.938 8 Si 0.931 3.069 9 H -0.267 1.267 10 H -0.294 1.294 11 H -0.241 1.241 12 N -1.102 6.102 13 S 2.613 3.387 14 O -0.991 6.991 15 O -0.985 6.985 16 C -0.605 4.605 17 C -0.121 4.121 18 H 0.093 0.907 19 C -0.139 4.139 20 C 0.040 3.960 21 N -0.679 5.679 22 C 0.027 3.973 23 H 0.044 0.956 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.269 0.731 27 H 0.416 0.584 28 H 0.151 0.849 29 H 0.144 0.856 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.347 0.653 35 H 0.080 0.920 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.267 9.356 -12.915 16.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.139 3.861 3 H 0.067 0.933 4 C -0.567 4.567 5 H 0.072 0.928 6 C -0.176 4.176 7 N -0.577 5.577 8 Si 0.758 3.242 9 H -0.193 1.193 10 H -0.222 1.222 11 H -0.165 1.165 12 N -0.860 5.860 13 S 2.709 3.291 14 O -0.981 6.981 15 O -0.975 6.975 16 C -0.738 4.738 17 C -0.143 4.143 18 H 0.111 0.889 19 C -0.179 4.179 20 C -0.090 4.090 21 N -0.306 5.306 22 C -0.103 4.103 23 H 0.062 0.938 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.250 0.750 28 H 0.169 0.831 29 H 0.162 0.838 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.164 0.836 35 H 0.099 0.901 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.389 9.043 -13.683 17.264 hybrid contribution -0.881 0.494 1.567 1.865 sum 4.508 9.537 -12.115 16.064 Atomic orbital electron populations 1.22610 0.98446 1.02024 1.00248 1.18716 0.91169 0.92743 0.83457 0.93307 1.21360 1.31876 1.13582 0.89858 0.92838 1.25671 0.96839 0.99664 0.95387 1.69997 1.46914 1.42106 0.98708 0.86127 0.79585 0.80512 0.78014 1.19336 1.22167 1.16454 1.55309 1.81711 1.19284 1.29723 1.04626 0.76681 0.74768 0.72986 1.93533 1.48307 1.71551 1.84745 1.93535 1.84883 1.58481 1.60624 1.30472 1.19970 1.14362 1.08962 1.22618 1.00453 0.97285 0.93909 0.88853 1.22870 0.95222 0.99552 1.00276 1.22840 0.98285 0.97480 0.90374 1.62667 1.35505 1.17906 1.14495 1.23506 0.95729 0.96068 0.94974 0.93770 0.92094 0.92222 0.92226 0.74955 0.83098 0.83793 0.90247 0.89568 0.90345 0.89345 0.83621 0.90148 0.89471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.23 9.00 71.98 0.65 -6.58 16 2 C 0.25 10.48 2.25 44.25 0.10 10.58 16 3 H 0.05 1.96 6.21 -2.39 -0.01 1.94 16 4 C -0.53 -27.17 9.34 25.60 0.24 -26.93 16 5 H 0.05 3.01 8.06 -2.91 -0.02 2.99 16 6 C 0.02 1.28 5.45 84.66 0.46 1.74 16 7 N -0.94 -54.72 13.96 21.45 0.30 -54.42 16 8 Si 0.93 41.14 24.37 68.60 1.67 42.82 16 9 H -0.27 -11.48 6.87 99.48 0.68 -10.80 16 10 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.24 -9.64 6.53 99.48 0.65 -8.99 16 12 N -1.10 -40.28 5.35 -172.52 -0.92 -41.20 16 13 S 2.61 83.47 5.23 -56.49 -0.30 83.18 16 14 O -0.99 -36.82 17.11 -127.65 -2.18 -39.00 16 15 O -0.98 -34.16 17.03 -127.65 -2.17 -36.34 16 16 C -0.61 -14.98 5.32 71.98 0.38 -14.60 16 17 C -0.12 -2.58 3.02 -9.59 -0.03 -2.61 16 18 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 19 C -0.14 -2.42 6.51 31.47 0.20 -2.22 16 20 C 0.04 0.63 7.52 86.45 0.65 1.28 16 21 N -0.68 -12.79 7.51 -502.17 -3.77 -16.56 16 22 C 0.03 0.60 6.19 86.65 0.54 1.14 16 23 H 0.04 1.84 3.27 -2.38 -0.01 1.83 16 24 H 0.06 2.35 7.42 -2.39 -0.02 2.33 16 25 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 26 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 27 H 0.42 14.64 8.79 -96.74 -0.85 13.79 16 28 H 0.15 3.38 8.00 -2.39 -0.02 3.36 16 29 H 0.14 3.43 7.44 -2.39 -0.02 3.41 16 30 H 0.08 1.40 7.85 -2.39 -0.02 1.38 16 31 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.35 5.32 8.92 -89.69 -0.80 4.52 16 35 H 0.08 1.85 7.72 -2.39 -0.02 1.83 16 36 H 0.09 2.01 7.95 -2.39 -0.02 1.99 16 Total: -1.00 -65.81 296.32 -4.82 -70.63 By element: Atomic # 1 Polarization: 29.74 SS G_CDS: -0.63 Total: 29.11 kcal Atomic # 6 Polarization: -41.40 SS G_CDS: 3.19 Total: -38.20 kcal Atomic # 7 Polarization: -107.79 SS G_CDS: -4.40 Total: -112.19 kcal Atomic # 8 Polarization: -70.98 SS G_CDS: -4.36 Total: -75.34 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 1.67 Total: 42.82 kcal Atomic # 16 Polarization: 83.47 SS G_CDS: -0.30 Total: 83.18 kcal Total: -65.81 -4.82 -70.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722266243.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.837 kcal (2) G-P(sol) polarization free energy of solvation -65.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds