Wall clock time and date at job start Mon Mar 30 2020 05:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09007 * 109.47154 * 2 1 4 4 C 1.50697 * 109.47693 * 239.99393 * 2 1 3 5 5 H 1.07997 * 120.00394 * 240.00071 * 4 2 1 6 6 C 1.37880 * 119.99825 * 60.00404 * 4 2 1 7 7 N 1.31514 * 119.99836 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99967 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47151 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47163 * 119.99477 * 8 6 4 11 11 H 1.48493 * 109.47030 * 239.99435 * 8 6 4 12 12 N 1.46504 * 109.47064 * 119.99416 * 2 1 3 13 13 S 1.65608 * 120.00010 * 265.00279 * 12 2 1 14 14 O 1.42094 * 104.27463 * 308.93025 * 13 12 2 15 15 O 1.42101 * 104.27578 * 181.06778 * 13 12 2 16 16 C 1.81398 * 104.44739 * 65.00026 * 13 12 2 17 17 C 1.53002 * 109.47310 * 180.02562 * 16 13 12 18 18 H 1.08998 * 110.90028 * 302.59071 * 17 16 13 19 19 C 1.55422 * 111.10766 * 178.62602 * 17 16 13 20 20 C 1.54321 * 103.04810 * 206.29505 * 19 17 16 21 21 N 1.47448 * 107.23159 * 22.28093 * 20 19 17 22 22 C 1.47846 * 108.56553 * 0.99350 * 21 20 19 23 23 H 1.09000 * 109.47052 * 60.00731 * 1 2 3 24 24 H 1.09007 * 109.47154 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47999 * 300.00178 * 1 2 3 26 26 H 0.97001 * 119.99569 * 179.97438 * 7 6 4 27 27 H 0.96996 * 120.00041 * 84.99978 * 12 2 1 28 28 H 1.09001 * 109.47379 * 59.99483 * 16 13 12 29 29 H 1.09001 * 109.47355 * 300.00077 * 16 13 12 30 30 H 1.09004 * 110.69757 * 87.90380 * 19 17 16 31 31 H 1.09005 * 110.84788 * 324.75261 * 19 17 16 32 32 H 1.08999 * 109.88748 * 262.87827 * 20 19 17 33 33 H 1.09000 * 109.89149 * 141.68777 * 20 19 17 34 34 H 1.00894 * 111.00079 * 123.25890 * 21 20 19 35 35 H 1.09002 * 110.37464 * 94.73346 * 22 21 20 36 36 H 1.08999 * 110.37318 * 216.96123 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9429 0.8295 -2.6034 8 14 2.3216 -1.1206 -4.0078 9 1 3.1467 -2.2873 -3.6034 10 1 1.1664 -1.5871 -4.8159 11 1 3.1468 -0.1877 -4.8163 12 7 2.0182 -0.6905 1.1963 13 16 2.4120 0.1774 2.5506 14 8 3.2872 1.1908 2.0751 15 8 2.8604 -0.8026 3.4768 16 6 0.8405 0.8991 3.0984 17 6 1.0749 1.7354 4.3581 18 1 1.5204 1.1314 5.1485 19 6 -0.2438 2.4009 4.8415 20 6 0.2537 3.6496 5.5995 21 7 1.6041 3.9581 5.0944 22 6 1.9507 2.9746 4.0464 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3635 0.5138 0.8899 26 1 0.7090 1.1610 -3.4845 27 1 2.1109 -1.6560 1.1951 28 1 0.1313 0.1012 3.3184 29 1 0.4384 1.5354 2.3100 30 1 -0.7883 1.7351 5.5111 31 1 -0.8670 2.6873 3.9943 32 1 0.2962 3.4419 6.6687 33 1 -0.4143 4.4897 5.4091 34 1 1.6495 4.9000 4.7355 35 1 1.7104 3.3707 3.0597 36 1 3.0081 2.7160 4.1034 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722266246.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:07 Heat of formation + Delta-G solvation = -80.374199 kcal Electronic energy + Delta-G solvation = -18693.650644 eV Core-core repulsion = 15725.414154 eV Total energy + Delta-G solvation = -2968.236491 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.72101 -36.57811 -35.54207 -35.35421 -32.46922 -32.21422 -29.41011 -28.33230 -26.21016 -25.19845 -21.50019 -21.04423 -20.55541 -18.72557 -17.50985 -16.63984 -16.47035 -16.00669 -15.41653 -15.26547 -14.72490 -13.84111 -13.61782 -13.40701 -12.99453 -12.73957 -12.52135 -12.22561 -12.03080 -11.80712 -11.66101 -11.57974 -11.46063 -11.22361 -11.08090 -11.03182 -10.85311 -10.61052 -10.41896 -10.19316 -10.04462 -9.23851 -8.65958 -8.56944 -8.31260 -6.17271 -4.23548 0.80772 3.23414 3.31526 3.34850 3.44647 4.00278 4.28562 4.33432 4.34486 4.49737 4.71319 4.81349 5.10316 5.14699 5.17351 5.26854 5.48043 5.55211 5.70753 5.73125 5.80333 5.98074 6.10750 6.27359 6.65689 6.68035 6.70089 6.91001 7.21571 7.50942 7.60222 7.83803 7.95822 8.22575 8.79740 9.42689 10.89321 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.032385 B = 0.005499 C = 0.005179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.379523 B = 5090.511834 C = 5405.600981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.264 3.736 3 H 0.051 0.949 4 C -0.518 4.518 5 H 0.065 0.935 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.902 3.098 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.282 1.282 12 N -1.103 6.103 13 S 2.607 3.393 14 O -0.954 6.954 15 O -0.981 6.981 16 C -0.629 4.629 17 C -0.088 4.088 18 H 0.096 0.904 19 C -0.131 4.131 20 C 0.044 3.956 21 N -0.683 5.683 22 C 0.030 3.970 23 H 0.095 0.905 24 H 0.036 0.964 25 H 0.011 0.989 26 H 0.264 0.736 27 H 0.408 0.592 28 H 0.132 0.868 29 H 0.137 0.863 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.053 0.947 34 H 0.342 0.658 35 H 0.060 0.940 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.310 3.441 11.863 13.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.160 3.840 3 H 0.069 0.931 4 C -0.558 4.558 5 H 0.083 0.917 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.730 3.270 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.208 1.208 12 N -0.863 5.863 13 S 2.699 3.301 14 O -0.944 6.944 15 O -0.971 6.971 16 C -0.757 4.757 17 C -0.108 4.108 18 H 0.114 0.886 19 C -0.170 4.170 20 C -0.086 4.086 21 N -0.313 5.313 22 C -0.099 4.099 23 H 0.114 0.886 24 H 0.056 0.944 25 H 0.030 0.970 26 H 0.074 0.926 27 H 0.241 0.759 28 H 0.151 0.849 29 H 0.155 0.845 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.158 0.842 35 H 0.079 0.921 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.198 3.536 12.623 13.493 hybrid contribution -1.161 -0.447 -1.795 2.184 sum -4.359 3.089 10.828 12.074 Atomic orbital electron populations 1.22409 0.98826 1.00233 1.00868 1.18629 0.90484 0.93298 0.81632 0.93094 1.21255 1.31652 1.13095 0.89768 0.91653 1.24922 0.94873 0.95033 0.99159 1.69858 1.36463 1.22747 1.23858 0.86372 0.78602 0.79644 0.82397 1.19647 1.20946 1.20831 1.55572 1.83969 1.19122 1.27633 1.04864 0.76734 0.74825 0.73717 1.93589 1.60443 1.61143 1.79253 1.93532 1.79988 1.58927 1.64657 1.30827 1.25865 1.11980 1.06980 1.22042 0.97531 0.95915 0.95309 0.88589 1.22876 0.96650 0.97027 1.00447 1.22640 0.89093 0.96769 1.00049 1.61841 1.26223 1.06502 1.36688 1.23223 1.00686 0.91718 0.94223 0.88631 0.94445 0.96978 0.92636 0.75857 0.84926 0.84523 0.90369 0.90746 0.90616 0.92843 0.84239 0.92132 0.89153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 9.26 37.15 0.34 -3.16 16 2 C 0.26 6.17 2.79 -69.09 -0.19 5.97 16 3 H 0.05 1.30 7.48 -51.92 -0.39 0.91 16 4 C -0.52 -13.55 8.76 -34.44 -0.30 -13.85 16 5 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 7 N -0.89 -24.03 11.32 55.43 0.63 -23.40 16 8 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 9 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 N -1.10 -21.84 5.35 -5.88 -0.03 -21.87 16 13 S 2.61 46.95 5.23 -107.50 -0.56 46.39 16 14 O -0.95 -20.22 16.09 -57.54 -0.93 -21.15 16 15 O -0.98 -19.27 18.08 -57.54 -1.04 -20.31 16 16 C -0.63 -8.72 4.73 37.16 0.18 -8.55 16 17 C -0.09 -1.13 3.08 -88.33 -0.27 -1.40 16 18 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 19 C -0.13 -1.37 6.42 -24.75 -0.16 -1.53 16 20 C 0.04 0.44 7.58 -2.83 -0.02 0.41 16 21 N -0.68 -8.01 7.39 -110.78 -0.82 -8.82 16 22 C 0.03 0.42 5.94 -2.30 -0.01 0.40 16 23 H 0.10 2.28 6.07 -51.93 -0.32 1.97 16 24 H 0.04 0.76 8.14 -51.92 -0.42 0.34 16 25 H 0.01 0.20 5.78 -51.93 -0.30 -0.10 16 26 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 27 H 0.41 7.53 8.79 -34.48 -0.30 7.23 16 28 H 0.13 1.57 8.14 -51.92 -0.42 1.14 16 29 H 0.14 1.89 6.73 -51.92 -0.35 1.54 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.77 8.05 -51.93 -0.42 0.35 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.34 3.41 8.91 -39.30 -0.35 3.06 16 35 H 0.06 0.84 8.00 -51.93 -0.42 0.42 16 36 H 0.09 1.33 7.67 -51.93 -0.40 0.93 16 LS Contribution 300.64 15.07 4.53 4.53 Total: -1.00 -31.02 300.64 -9.10 -40.11 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -5.32 Total: 9.11 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: -0.54 Total: -20.14 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: -0.22 Total: -54.10 kcal Atomic # 8 Polarization: -39.49 SS G_CDS: -1.97 Total: -41.46 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 46.95 SS G_CDS: -0.56 Total: 46.39 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.02 -9.10 -40.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722266246.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.260 kcal (2) G-P(sol) polarization free energy of solvation -31.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds