Wall clock time and date at job start Mon Mar 30 2020 05:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09007 * 109.47154 * 2 1 4 4 C 1.50697 * 109.47693 * 239.99393 * 2 1 3 5 5 H 1.07997 * 120.00394 * 240.00071 * 4 2 1 6 6 C 1.37880 * 119.99825 * 60.00404 * 4 2 1 7 7 N 1.31514 * 119.99836 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99967 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47151 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47163 * 119.99477 * 8 6 4 11 11 H 1.48493 * 109.47030 * 239.99435 * 8 6 4 12 12 N 1.46504 * 109.47064 * 119.99416 * 2 1 3 13 13 S 1.65608 * 120.00010 * 265.00279 * 12 2 1 14 14 O 1.42094 * 104.27463 * 308.93025 * 13 12 2 15 15 O 1.42101 * 104.27578 * 181.06778 * 13 12 2 16 16 C 1.81398 * 104.44739 * 65.00026 * 13 12 2 17 17 C 1.53002 * 109.47310 * 180.02562 * 16 13 12 18 18 H 1.08998 * 110.90028 * 302.59071 * 17 16 13 19 19 C 1.55422 * 111.10766 * 178.62602 * 17 16 13 20 20 C 1.54321 * 103.04810 * 206.29505 * 19 17 16 21 21 N 1.47448 * 107.23159 * 22.28093 * 20 19 17 22 22 C 1.47846 * 108.56553 * 0.99350 * 21 20 19 23 23 H 1.09000 * 109.47052 * 60.00731 * 1 2 3 24 24 H 1.09007 * 109.47154 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47999 * 300.00178 * 1 2 3 26 26 H 0.97001 * 119.99569 * 179.97438 * 7 6 4 27 27 H 0.96996 * 120.00041 * 84.99978 * 12 2 1 28 28 H 1.09001 * 109.47379 * 59.99483 * 16 13 12 29 29 H 1.09001 * 109.47355 * 300.00077 * 16 13 12 30 30 H 1.09004 * 110.69757 * 87.90380 * 19 17 16 31 31 H 1.09005 * 110.84788 * 324.75261 * 19 17 16 32 32 H 1.08999 * 109.88748 * 262.87827 * 20 19 17 33 33 H 1.09000 * 109.89149 * 141.68777 * 20 19 17 34 34 H 1.00894 * 111.00079 * 123.25890 * 21 20 19 35 35 H 1.09002 * 110.37464 * 94.73346 * 22 21 20 36 36 H 1.08999 * 110.37318 * 216.96123 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9429 0.8295 -2.6034 8 14 2.3216 -1.1206 -4.0078 9 1 3.1467 -2.2873 -3.6034 10 1 1.1664 -1.5871 -4.8159 11 1 3.1468 -0.1877 -4.8163 12 7 2.0182 -0.6905 1.1963 13 16 2.4120 0.1774 2.5506 14 8 3.2872 1.1908 2.0751 15 8 2.8604 -0.8026 3.4768 16 6 0.8405 0.8991 3.0984 17 6 1.0749 1.7354 4.3581 18 1 1.5204 1.1314 5.1485 19 6 -0.2438 2.4009 4.8415 20 6 0.2537 3.6496 5.5995 21 7 1.6041 3.9581 5.0944 22 6 1.9507 2.9746 4.0464 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3635 0.5138 0.8899 26 1 0.7090 1.1610 -3.4845 27 1 2.1109 -1.6560 1.1951 28 1 0.1313 0.1012 3.3184 29 1 0.4384 1.5354 2.3100 30 1 -0.7883 1.7351 5.5111 31 1 -0.8670 2.6873 3.9943 32 1 0.2962 3.4419 6.6687 33 1 -0.4143 4.4897 5.4091 34 1 1.6495 4.9000 4.7355 35 1 1.7104 3.3707 3.0597 36 1 3.0081 2.7160 4.1034 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722266246.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:07 Heat of formation + Delta-G solvation = -105.759784 kcal Electronic energy + Delta-G solvation = -18694.751446 eV Core-core repulsion = 15725.414154 eV Total energy + Delta-G solvation = -2969.337292 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.65231 -38.13155 -37.27262 -36.92229 -34.12332 -33.50081 -30.31519 -30.02497 -27.53591 -26.89633 -22.81222 -22.36587 -21.61297 -20.21534 -19.15567 -18.09696 -17.70012 -17.25254 -17.02894 -16.59769 -16.34533 -15.37780 -14.76962 -14.53759 -14.34812 -14.04419 -13.95007 -13.62900 -13.50697 -13.15309 -13.05830 -12.99402 -12.95051 -12.83217 -12.50847 -12.38373 -12.21181 -12.13906 -11.99020 -11.73921 -11.36978 -11.08273 -10.58842 -10.02366 -9.45945 -8.16138 -6.28718 -0.61705 1.42380 1.45522 1.55821 1.94115 2.43552 2.82344 3.12341 3.14568 3.25782 3.46703 3.64317 3.77318 4.07421 4.27595 4.29329 4.49050 4.54337 4.58591 4.73196 4.84360 4.92863 4.93187 5.00039 5.03371 5.15981 5.26201 5.58865 5.78794 5.79878 6.05800 6.14862 6.40378 6.42625 6.81690 7.40614 8.89309 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.032385 B = 0.005499 C = 0.005179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.379523 B = 5090.511834 C = 5405.600981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.267 3.733 3 H 0.023 0.977 4 C -0.542 4.542 5 H 0.059 0.941 6 C 0.018 3.982 7 N -0.912 5.912 8 Si 0.959 3.041 9 H -0.270 1.270 10 H -0.275 1.275 11 H -0.283 1.283 12 N -1.108 6.108 13 S 2.606 3.394 14 O -0.996 6.996 15 O -0.999 6.999 16 C -0.600 4.600 17 C -0.095 4.095 18 H 0.100 0.900 19 C -0.125 4.125 20 C 0.041 3.959 21 N -0.691 5.691 22 C 0.024 3.976 23 H 0.069 0.931 24 H 0.042 0.958 25 H 0.049 0.951 26 H 0.266 0.734 27 H 0.412 0.588 28 H 0.165 0.835 29 H 0.143 0.857 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.350 0.650 35 H 0.053 0.947 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.994 3.370 12.875 14.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.161 3.839 3 H 0.041 0.959 4 C -0.581 4.581 5 H 0.078 0.922 6 C -0.182 4.182 7 N -0.551 5.551 8 Si 0.785 3.215 9 H -0.195 1.195 10 H -0.201 1.201 11 H -0.209 1.209 12 N -0.866 5.866 13 S 2.703 3.297 14 O -0.986 6.986 15 O -0.990 6.990 16 C -0.733 4.733 17 C -0.116 4.116 18 H 0.118 0.882 19 C -0.164 4.164 20 C -0.088 4.088 21 N -0.321 5.321 22 C -0.106 4.106 23 H 0.088 0.912 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.246 0.754 28 H 0.183 0.817 29 H 0.161 0.839 30 H 0.118 0.882 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.167 0.833 35 H 0.071 0.929 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.839 3.435 13.621 14.857 hybrid contribution -0.634 -0.367 -2.008 2.137 sum -5.472 3.069 11.613 13.199 Atomic orbital electron populations 1.22240 0.97044 1.00744 1.01447 1.18370 0.91774 0.91749 0.81982 0.95915 1.21630 1.31858 1.13261 0.91400 0.92243 1.25631 0.95125 0.95737 1.01702 1.69960 1.37104 1.23617 1.24459 0.85488 0.78218 0.78552 0.79247 1.19474 1.20071 1.20916 1.55408 1.84265 1.19360 1.27576 1.04713 0.78005 0.74004 0.72936 1.93536 1.63451 1.61771 1.79846 1.93502 1.81324 1.59725 1.64445 1.30538 1.22170 1.12864 1.07703 1.22168 0.99217 0.95503 0.94667 0.88214 1.22913 0.95190 0.97215 1.01085 1.22758 0.88315 0.97372 1.00343 1.61801 1.27771 1.06627 1.35927 1.23183 0.99873 0.92920 0.94580 0.91183 0.93875 0.93245 0.92506 0.75379 0.81670 0.83873 0.88231 0.90142 0.89788 0.90915 0.83324 0.92868 0.91257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.46 9.26 71.98 0.67 -5.80 16 2 C 0.27 12.51 2.79 44.24 0.12 12.64 16 3 H 0.02 1.20 7.48 -2.38 -0.02 1.18 16 4 C -0.54 -28.63 8.76 25.60 0.22 -28.40 16 5 H 0.06 3.11 7.81 -2.91 -0.02 3.09 16 6 C 0.02 0.96 5.30 84.66 0.45 1.41 16 7 N -0.91 -49.52 11.32 21.45 0.24 -49.28 16 8 Si 0.96 42.22 29.54 68.60 2.03 44.24 16 9 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 10 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 11 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 12 N -1.11 -43.72 5.35 -172.53 -0.92 -44.64 16 13 S 2.61 93.28 5.23 -56.49 -0.30 92.99 16 14 O -1.00 -43.43 16.09 -127.65 -2.05 -45.48 16 15 O -1.00 -38.93 18.08 -127.65 -2.31 -41.24 16 16 C -0.60 -15.16 4.73 71.98 0.34 -14.82 16 17 C -0.09 -2.22 3.08 -9.31 -0.03 -2.25 16 18 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 19 C -0.12 -2.14 6.42 31.88 0.20 -1.94 16 20 C 0.04 0.68 7.58 86.65 0.66 1.34 16 21 N -0.69 -15.04 7.39 -504.41 -3.73 -18.77 16 22 C 0.02 0.64 5.94 86.77 0.52 1.15 16 23 H 0.07 3.31 6.07 -2.39 -0.01 3.30 16 24 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 25 H 0.05 1.62 5.78 -2.39 -0.01 1.61 16 26 H 0.27 13.66 8.31 -92.71 -0.77 12.89 16 27 H 0.41 15.21 8.79 -96.75 -0.85 14.36 16 28 H 0.17 3.19 8.14 -2.39 -0.02 3.17 16 29 H 0.14 3.58 6.73 -2.39 -0.02 3.56 16 30 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 31 H 0.08 1.32 8.05 -2.38 -0.02 1.30 16 32 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.35 6.48 8.91 -89.70 -0.80 5.68 16 35 H 0.05 1.46 8.00 -2.39 -0.02 1.44 16 36 H 0.07 2.10 7.67 -2.39 -0.02 2.08 16 Total: -1.00 -66.93 300.64 -4.45 -71.38 By element: Atomic # 1 Polarization: 28.01 SS G_CDS: -0.56 Total: 27.45 kcal Atomic # 6 Polarization: -39.81 SS G_CDS: 3.15 Total: -36.65 kcal Atomic # 7 Polarization: -108.28 SS G_CDS: -4.41 Total: -112.69 kcal Atomic # 8 Polarization: -82.36 SS G_CDS: -4.36 Total: -86.72 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.24 kcal Atomic # 16 Polarization: 93.28 SS G_CDS: -0.30 Total: 92.99 kcal Total: -66.93 -4.45 -71.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722266246.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.384 kcal (2) G-P(sol) polarization free energy of solvation -66.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds