Wall clock time and date at job start Mon Mar 30 2020 05:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47233 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46997 * 120.00173 * 8 6 4 11 11 H 1.48501 * 109.47364 * 240.00497 * 8 6 4 12 12 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 13 13 S 1.65601 * 120.00132 * 265.00058 * 12 2 1 14 14 O 1.42099 * 104.27410 * 181.06642 * 13 12 2 15 15 O 1.42101 * 104.27773 * 308.92737 * 13 12 2 16 16 C 1.81399 * 104.44625 * 64.99929 * 13 12 2 17 17 C 1.53002 * 109.46960 * 179.97438 * 16 13 12 18 18 H 1.08995 * 110.36611 * 305.70299 * 17 16 13 19 19 C 1.54383 * 110.41294 * 183.35029 * 17 16 13 20 20 C 1.54258 * 105.06086 * 217.36987 * 19 17 16 21 21 C 1.54383 * 105.06288 * 359.97438 * 20 19 17 22 22 N 1.48566 * 110.40942 * 68.05186 * 17 16 13 23 23 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 26 26 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 27 27 H 0.97003 * 119.99991 * 84.99836 * 12 2 1 28 28 H 1.09000 * 109.47264 * 299.99985 * 16 13 12 29 29 H 1.09000 * 109.47380 * 59.99953 * 16 13 12 30 30 H 1.09000 * 110.32043 * 336.26071 * 19 17 16 31 31 H 1.08989 * 110.32254 * 98.36988 * 19 17 16 32 32 H 1.09000 * 110.32616 * 118.89531 * 20 19 17 33 33 H 1.08997 * 110.32560 * 241.00077 * 20 19 17 34 34 H 1.08992 * 110.41664 * 142.63369 * 21 20 19 35 35 H 1.09006 * 110.41038 * 265.07793 * 21 20 19 36 36 H 1.00905 * 110.99425 * 277.81703 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1455 -2.2874 -3.6040 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1871 -4.8166 12 7 2.0184 -0.6906 1.1961 13 16 2.4123 0.1771 2.5505 14 8 2.8607 -0.8030 3.4765 15 8 3.2875 1.1906 2.0751 16 6 0.8408 0.8987 3.0985 17 6 1.0752 1.7338 4.3589 18 1 1.5702 1.1355 5.1238 19 6 -0.2623 2.2903 4.8926 20 6 0.0700 3.7050 5.4100 21 6 1.5806 3.8841 5.1461 22 7 1.8840 2.9384 4.0394 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 0.7093 1.1619 -3.4844 27 1 2.1110 -1.6562 1.1948 28 1 0.4387 1.5351 2.3102 29 1 0.1316 0.1008 3.3184 30 1 -0.9973 2.3440 4.0894 31 1 -0.6348 1.6663 5.7048 32 1 -0.5019 4.4530 4.8609 33 1 -0.1402 3.7769 6.4771 34 1 1.7943 4.9082 4.8404 35 1 2.1552 3.6240 6.0351 36 1 2.8678 2.7161 4.0110 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722266283.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:43 Heat of formation + Delta-G solvation = -78.121560 kcal Electronic energy + Delta-G solvation = -18697.205479 eV Core-core repulsion = 15729.066670 eV Total energy + Delta-G solvation = -2968.138809 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.68225 -36.52071 -35.47843 -35.28839 -32.16459 -31.67442 -30.38559 -28.27210 -26.03642 -25.13747 -21.37063 -20.98889 -20.43671 -18.66911 -17.58566 -16.93693 -16.12039 -15.95826 -15.42648 -14.94096 -14.79817 -14.28299 -13.56713 -13.04242 -12.77891 -12.42254 -12.37885 -12.16042 -12.01728 -11.92062 -11.71149 -11.49224 -11.39273 -11.30116 -11.10376 -10.98048 -10.68386 -10.55933 -10.35103 -10.14690 -9.99170 -9.16726 -8.72416 -8.59754 -8.24361 -6.11010 -4.17477 0.87988 3.27074 3.34961 3.38388 3.49239 3.96082 4.26593 4.38413 4.51634 4.58780 4.79146 4.86757 5.01866 5.12403 5.21890 5.38939 5.42532 5.52876 5.68281 5.77126 5.86933 5.98520 6.06921 6.35058 6.59367 6.74154 6.78625 6.99071 7.17448 7.58341 7.66909 7.90556 8.02725 8.29084 8.85565 9.48341 10.95449 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.032299 B = 0.005537 C = 0.005203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.698716 B = 5055.786582 C = 5380.212920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.264 3.736 3 H 0.054 0.946 4 C -0.518 4.518 5 H 0.064 0.936 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 N -1.103 6.103 13 S 2.603 3.397 14 O -0.988 6.988 15 O -0.949 6.949 16 C -0.623 4.623 17 C 0.075 3.925 18 H 0.060 0.940 19 C -0.113 4.113 20 C -0.125 4.125 21 C 0.035 3.965 22 N -0.664 5.664 23 H 0.013 0.987 24 H 0.035 0.965 25 H 0.095 0.905 26 H 0.263 0.737 27 H 0.407 0.593 28 H 0.147 0.853 29 H 0.131 0.869 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.041 0.959 36 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.483 3.155 13.976 14.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.160 3.840 3 H 0.071 0.929 4 C -0.558 4.558 5 H 0.082 0.918 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.862 5.862 13 S 2.695 3.305 14 O -0.978 6.978 15 O -0.939 6.939 16 C -0.751 4.751 17 C -0.036 4.036 18 H 0.078 0.922 19 C -0.152 4.152 20 C -0.163 4.163 21 C -0.094 4.094 22 N -0.296 5.296 23 H 0.032 0.968 24 H 0.054 0.946 25 H 0.113 0.887 26 H 0.073 0.927 27 H 0.240 0.760 28 H 0.165 0.835 29 H 0.149 0.851 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.060 0.940 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.149 3.863 13.673 14.553 hybrid contribution -0.012 -1.173 -0.269 1.203 sum -3.161 2.691 13.404 14.032 Atomic orbital electron populations 1.22398 0.98827 1.00067 1.00978 1.18637 0.90508 0.93394 0.81476 0.92865 1.21254 1.31652 1.13054 0.89828 0.91751 1.24917 0.94925 0.95037 0.99102 1.69863 1.36446 1.22648 1.23804 0.86389 0.78579 0.79618 0.82506 1.19709 1.20981 1.20851 1.55549 1.84003 1.18994 1.27682 1.04944 0.76965 0.74773 0.73835 1.93526 1.80228 1.59166 1.64885 1.93594 1.60462 1.60885 1.78961 1.30803 1.25492 1.11205 1.07582 1.22099 0.96385 0.91684 0.93429 0.92235 1.22307 0.96236 0.95816 1.00806 1.22311 0.95852 0.97400 1.00785 1.22941 0.95931 0.98074 0.92439 1.63698 1.12065 1.10039 1.43759 0.96840 0.94596 0.88653 0.92657 0.76001 0.83514 0.85068 0.90214 0.91059 0.90734 0.91348 0.89653 0.94035 0.83736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.60 9.26 37.16 0.34 -3.25 16 2 C 0.26 6.34 2.79 -69.08 -0.19 6.15 16 3 H 0.05 1.41 7.48 -51.93 -0.39 1.02 16 4 C -0.52 -13.81 8.76 -34.44 -0.30 -14.11 16 5 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.48 11.32 55.43 0.63 -23.85 16 8 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 9 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 N -1.10 -22.39 5.35 -5.88 -0.03 -22.42 16 13 S 2.60 47.98 5.26 -107.50 -0.57 47.42 16 14 O -0.99 -19.51 18.08 -57.54 -1.04 -20.55 16 15 O -0.95 -20.63 16.32 -57.54 -0.94 -21.57 16 16 C -0.62 -9.13 4.80 37.16 0.18 -8.95 16 17 C 0.08 0.99 3.12 -66.06 -0.21 0.79 16 18 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 19 C -0.11 -1.21 6.55 -25.35 -0.17 -1.38 16 20 C -0.13 -1.20 7.00 -25.35 -0.18 -1.38 16 21 C 0.04 0.38 7.47 -2.10 -0.02 0.36 16 22 N -0.66 -9.31 6.96 -102.63 -0.71 -10.02 16 23 H 0.01 0.24 5.78 -51.93 -0.30 -0.06 16 24 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 26 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 27 H 0.41 7.69 8.79 -34.47 -0.30 7.38 16 28 H 0.15 2.28 6.77 -51.92 -0.35 1.93 16 29 H 0.13 1.61 8.14 -51.92 -0.42 1.18 16 30 H 0.08 0.88 7.86 -51.93 -0.41 0.47 16 31 H 0.07 0.64 8.14 -51.94 -0.42 0.22 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.35 4.93 7.99 -39.29 -0.31 4.62 16 LS Contribution 301.21 15.07 4.54 4.54 Total: -1.00 -31.76 301.21 -9.08 -40.84 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -5.31 Total: 9.95 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: -0.63 Total: -20.18 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: -0.12 Total: -56.30 kcal Atomic # 8 Polarization: -40.13 SS G_CDS: -1.98 Total: -42.11 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 47.98 SS G_CDS: -0.57 Total: 47.42 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.76 -9.08 -40.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722266283.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.277 kcal (2) G-P(sol) polarization free energy of solvation -31.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds