Wall clock time and date at job start Mon Mar 30 2020 05:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47233 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46997 * 120.00173 * 8 6 4 11 11 H 1.48501 * 109.47364 * 240.00497 * 8 6 4 12 12 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 13 13 S 1.65601 * 120.00132 * 265.00058 * 12 2 1 14 14 O 1.42099 * 104.27410 * 181.06642 * 13 12 2 15 15 O 1.42101 * 104.27773 * 308.92737 * 13 12 2 16 16 C 1.81399 * 104.44625 * 64.99929 * 13 12 2 17 17 C 1.53002 * 109.46960 * 179.97438 * 16 13 12 18 18 H 1.08995 * 110.36611 * 305.70299 * 17 16 13 19 19 C 1.54383 * 110.41294 * 183.35029 * 17 16 13 20 20 C 1.54258 * 105.06086 * 217.36987 * 19 17 16 21 21 C 1.54383 * 105.06288 * 359.97438 * 20 19 17 22 22 N 1.48566 * 110.40942 * 68.05186 * 17 16 13 23 23 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 26 26 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 27 27 H 0.97003 * 119.99991 * 84.99836 * 12 2 1 28 28 H 1.09000 * 109.47264 * 299.99985 * 16 13 12 29 29 H 1.09000 * 109.47380 * 59.99953 * 16 13 12 30 30 H 1.09000 * 110.32043 * 336.26071 * 19 17 16 31 31 H 1.08989 * 110.32254 * 98.36988 * 19 17 16 32 32 H 1.09000 * 110.32616 * 118.89531 * 20 19 17 33 33 H 1.08997 * 110.32560 * 241.00077 * 20 19 17 34 34 H 1.08992 * 110.41664 * 142.63369 * 21 20 19 35 35 H 1.09006 * 110.41038 * 265.07793 * 21 20 19 36 36 H 1.00905 * 110.99425 * 277.81703 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1455 -2.2874 -3.6040 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1871 -4.8166 12 7 2.0184 -0.6906 1.1961 13 16 2.4123 0.1771 2.5505 14 8 2.8607 -0.8030 3.4765 15 8 3.2875 1.1906 2.0751 16 6 0.8408 0.8987 3.0985 17 6 1.0752 1.7338 4.3589 18 1 1.5702 1.1355 5.1238 19 6 -0.2623 2.2903 4.8926 20 6 0.0700 3.7050 5.4100 21 6 1.5806 3.8841 5.1461 22 7 1.8840 2.9384 4.0394 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 0.7093 1.1619 -3.4844 27 1 2.1110 -1.6562 1.1948 28 1 0.4387 1.5351 2.3102 29 1 0.1316 0.1008 3.3184 30 1 -0.9973 2.3440 4.0894 31 1 -0.6348 1.6663 5.7048 32 1 -0.5019 4.4530 4.8609 33 1 -0.1402 3.7769 6.4771 34 1 1.7943 4.9082 4.8404 35 1 2.1552 3.6240 6.0351 36 1 2.8678 2.7161 4.0110 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722266283.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:43 Heat of formation + Delta-G solvation = -103.945604 kcal Electronic energy + Delta-G solvation = -18698.325293 eV Core-core repulsion = 15729.066670 eV Total energy + Delta-G solvation = -2969.258623 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.59988 -38.10227 -37.25501 -36.89442 -34.10932 -32.72326 -31.26832 -30.05250 -27.41836 -26.76062 -22.80713 -22.25137 -21.40832 -20.20297 -19.17526 -18.27999 -17.60202 -17.31047 -17.09303 -16.48850 -15.97148 -15.52106 -15.24436 -14.53445 -14.00183 -13.84714 -13.65707 -13.47938 -13.36288 -13.15320 -13.01050 -12.99603 -12.92565 -12.82101 -12.70622 -12.36570 -12.19882 -12.12595 -11.97686 -11.43609 -11.35629 -11.06528 -10.57406 -10.00764 -9.68962 -8.14017 -6.27325 -0.57942 1.43367 1.45937 1.56680 1.95040 2.44703 2.85411 2.99842 3.15900 3.41603 3.58549 3.65470 3.93085 4.10298 4.21060 4.31782 4.56747 4.60428 4.63778 4.82144 4.93811 4.94435 5.01532 5.04677 5.16953 5.20203 5.23241 5.60032 5.72179 5.80240 6.07461 6.13755 6.16618 6.44232 6.83320 7.41933 8.91483 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.032299 B = 0.005537 C = 0.005203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.698716 B = 5055.786582 C = 5380.212920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.268 3.732 3 H 0.021 0.979 4 C -0.542 4.542 5 H 0.060 0.940 6 C 0.017 3.983 7 N -0.913 5.913 8 Si 0.961 3.039 9 H -0.270 1.270 10 H -0.275 1.275 11 H -0.283 1.283 12 N -1.107 6.107 13 S 2.606 3.394 14 O -1.002 7.002 15 O -0.991 6.991 16 C -0.597 4.597 17 C 0.065 3.935 18 H 0.071 0.929 19 C -0.111 4.111 20 C -0.122 4.122 21 C 0.030 3.970 22 N -0.691 5.691 23 H 0.047 0.953 24 H 0.042 0.958 25 H 0.069 0.931 26 H 0.266 0.734 27 H 0.412 0.588 28 H 0.142 0.858 29 H 0.164 0.836 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.056 0.944 36 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.770 2.919 15.291 16.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.163 3.837 3 H 0.039 0.961 4 C -0.582 4.582 5 H 0.078 0.922 6 C -0.183 4.183 7 N -0.552 5.552 8 Si 0.786 3.214 9 H -0.194 1.194 10 H -0.200 1.200 11 H -0.209 1.209 12 N -0.866 5.866 13 S 2.703 3.297 14 O -0.992 6.992 15 O -0.981 6.981 16 C -0.730 4.730 17 C -0.047 4.047 18 H 0.089 0.911 19 C -0.150 4.150 20 C -0.160 4.160 21 C -0.099 4.099 22 N -0.322 5.322 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.087 0.913 26 H 0.075 0.925 27 H 0.245 0.755 28 H 0.160 0.840 29 H 0.182 0.818 30 H 0.096 0.904 31 H 0.114 0.886 32 H 0.093 0.907 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.075 0.925 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.399 3.599 14.978 16.020 hybrid contribution 0.392 -1.047 -0.586 1.263 sum -4.007 2.552 14.391 15.155 Atomic orbital electron populations 1.22227 0.97144 1.00625 1.01375 1.18342 0.91719 0.91673 0.81999 0.96124 1.21629 1.31895 1.13251 0.91389 0.92195 1.25661 0.95136 0.95737 1.01787 1.69975 1.37132 1.23608 1.24456 0.85466 0.78212 0.78518 0.79158 1.19398 1.20045 1.20905 1.55389 1.84283 1.19271 1.27639 1.04727 0.78062 0.73915 0.73033 1.93500 1.81405 1.59787 1.64555 1.93540 1.63385 1.61582 1.79588 1.30573 1.22064 1.12023 1.08358 1.22323 0.98103 0.91632 0.92600 0.91113 1.22366 0.94458 0.96731 1.01492 1.22343 0.94676 0.96669 1.02345 1.23090 0.97204 0.97509 0.92067 1.63730 1.11719 1.11045 1.45744 0.93435 0.93839 0.91259 0.92517 0.75463 0.83997 0.81804 0.90446 0.88635 0.90730 0.88885 0.89415 0.92543 0.84614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.70 9.26 71.98 0.67 -6.04 16 2 C 0.27 13.02 2.79 44.25 0.12 13.15 16 3 H 0.02 1.14 7.48 -2.39 -0.02 1.12 16 4 C -0.54 -29.25 8.76 25.60 0.22 -29.03 16 5 H 0.06 3.19 7.81 -2.91 -0.02 3.17 16 6 C 0.02 0.91 5.30 84.65 0.45 1.36 16 7 N -0.91 -50.81 11.32 21.45 0.24 -50.56 16 8 Si 0.96 42.90 29.54 68.60 2.03 44.93 16 9 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 10 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 12 N -1.11 -45.02 5.35 -172.52 -0.92 -45.95 16 13 S 2.61 95.50 5.26 -56.49 -0.30 95.21 16 14 O -1.00 -38.96 18.08 -127.65 -2.31 -41.27 16 15 O -0.99 -44.23 16.32 -127.65 -2.08 -46.31 16 16 C -0.60 -16.29 4.80 71.98 0.35 -15.95 16 17 C 0.07 1.56 3.12 45.06 0.14 1.70 16 18 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 19 C -0.11 -2.01 6.55 31.49 0.21 -1.80 16 20 C -0.12 -1.96 7.00 31.49 0.22 -1.74 16 21 C 0.03 0.58 7.47 86.42 0.65 1.22 16 22 N -0.69 -18.65 6.96 -478.62 -3.33 -21.98 16 23 H 0.05 1.68 5.78 -2.39 -0.01 1.66 16 24 H 0.04 1.77 8.14 -2.39 -0.02 1.76 16 25 H 0.07 3.41 6.07 -2.38 -0.01 3.39 16 26 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 27 H 0.41 15.56 8.79 -96.74 -0.85 14.71 16 28 H 0.14 4.16 6.77 -2.39 -0.02 4.14 16 29 H 0.16 3.41 8.14 -2.39 -0.02 3.39 16 30 H 0.08 1.44 7.86 -2.39 -0.02 1.43 16 31 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.09 1.62 8.14 -2.39 -0.02 1.61 16 35 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 36 H 0.34 9.66 7.99 -89.69 -0.72 8.94 16 Total: -1.00 -68.55 301.21 -4.13 -72.68 By element: Atomic # 1 Polarization: 30.84 SS G_CDS: -0.48 Total: 30.37 kcal Atomic # 6 Polarization: -40.13 SS G_CDS: 3.02 Total: -37.11 kcal Atomic # 7 Polarization: -114.48 SS G_CDS: -4.01 Total: -118.49 kcal Atomic # 8 Polarization: -83.19 SS G_CDS: -4.39 Total: -87.58 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 16 Polarization: 95.50 SS G_CDS: -0.30 Total: 95.21 kcal Total: -68.55 -4.13 -72.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722266283.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.265 kcal (2) G-P(sol) polarization free energy of solvation -68.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds