Wall clock time and date at job start Mon Mar 30 2020 05:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46602 * 2 1 4 4 C 1.50698 * 109.47360 * 239.99967 * 2 1 3 5 5 H 1.08001 * 119.99409 * 271.12170 * 4 2 1 6 6 C 1.37872 * 119.99844 * 91.12126 * 4 2 1 7 7 N 1.31511 * 120.00185 * 352.40758 * 6 4 2 8 8 Si 1.86807 * 119.99475 * 172.41194 * 6 4 2 9 9 H 1.48499 * 109.46835 * 179.97438 * 8 6 4 10 10 H 1.48497 * 109.47071 * 299.99636 * 8 6 4 11 11 H 1.48496 * 109.47333 * 60.00065 * 8 6 4 12 12 N 1.46499 * 109.46817 * 119.99784 * 2 1 3 13 13 S 1.65605 * 120.00031 * 265.00263 * 12 2 1 14 14 O 1.42099 * 104.27764 * 181.07170 * 13 12 2 15 15 O 1.42100 * 104.27608 * 308.93010 * 13 12 2 16 16 C 1.81395 * 104.45068 * 64.99890 * 13 12 2 17 17 C 1.53004 * 109.47360 * 180.02562 * 16 13 12 18 18 H 1.09003 * 110.33102 * 60.79932 * 17 16 13 19 19 C 1.54903 * 110.37269 * 183.17666 * 17 16 13 20 20 C 1.55142 * 101.65018 * 155.90085 * 19 17 16 21 21 C 1.54315 * 103.01807 * 324.34136 * 20 19 17 22 22 N 1.47442 * 107.23648 * 22.28719 * 21 20 19 23 23 H 1.08999 * 109.47483 * 305.59694 * 1 2 3 24 24 H 1.09000 * 109.46949 * 65.59737 * 1 2 3 25 25 H 1.09001 * 109.46791 * 185.59443 * 1 2 3 26 26 H 0.96996 * 120.00008 * 354.79306 * 7 6 4 27 27 H 0.97002 * 120.00250 * 85.00167 * 12 2 1 28 28 H 1.08996 * 109.47387 * 300.00235 * 16 13 12 29 29 H 1.09004 * 109.46821 * 60.00190 * 16 13 12 30 30 H 1.09000 * 110.98690 * 273.98469 * 19 17 16 31 31 H 1.08998 * 110.99373 * 37.80817 * 19 17 16 32 32 H 1.09001 * 110.70428 * 205.96221 * 20 19 17 33 33 H 1.09001 * 110.85663 * 82.79416 * 20 19 17 34 34 H 1.09000 * 109.89322 * 262.87763 * 21 20 19 35 35 H 1.09005 * 110.02008 * 141.76934 * 21 20 19 36 36 H 1.00901 * 111.00238 * 123.24845 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2304 5 1 2.1952 -1.7779 -1.2089 6 6 2.2843 0.0024 -2.3834 7 7 1.9470 1.2713 -2.4590 8 14 3.1045 -0.8344 -3.8383 9 1 3.2617 0.1415 -4.9465 10 1 4.4397 -1.3400 -3.4303 11 1 2.2635 -1.9699 -4.2950 12 7 2.0183 -0.6906 1.1962 13 16 2.4121 0.1773 2.5506 14 8 2.8605 -0.8028 3.4767 15 8 3.2874 1.1907 2.0752 16 6 0.8407 0.8990 3.0985 17 6 1.0751 1.7352 4.3581 18 1 1.7722 2.5469 4.1496 19 6 -0.2669 2.2968 4.8901 20 6 0.0613 2.5254 6.3891 21 6 1.0006 1.3473 6.7228 22 7 1.5887 0.8841 5.4526 23 1 -0.3634 0.5982 0.8356 24 1 -0.3633 0.4246 -0.9359 25 1 -0.3633 -1.0228 0.1002 26 1 1.4539 1.6861 -1.7339 27 1 2.1110 -1.6562 1.1950 28 1 0.4386 1.5353 2.3101 29 1 0.1315 0.1010 3.3184 30 1 -0.5194 3.2361 4.3982 31 1 -1.0691 1.5682 4.7727 32 1 -0.8447 2.4790 6.9934 33 1 0.5713 3.4778 6.5339 34 1 0.4328 0.5397 7.1849 35 1 1.7897 1.6789 7.3977 36 1 2.5966 0.9117 5.4895 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722266392.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:53 Heat of formation + Delta-G solvation = -83.696946 kcal Electronic energy + Delta-G solvation = -18692.630002 eV Core-core repulsion = 15724.249427 eV Total energy + Delta-G solvation = -2968.380576 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.80027 -36.48125 -35.66628 -35.27740 -32.19771 -31.75002 -30.40168 -28.45460 -26.09735 -24.79698 -21.37146 -21.23062 -20.64141 -18.64986 -17.61596 -17.28412 -16.68049 -15.83818 -15.38453 -15.19920 -14.21229 -13.85462 -13.67544 -13.42034 -13.25313 -12.74801 -12.34377 -12.22507 -12.02901 -11.91795 -11.65943 -11.45182 -11.39206 -11.35788 -11.33884 -10.97678 -10.85683 -10.74939 -10.34955 -10.12124 -10.08824 -8.89982 -8.67981 -8.61609 -8.17247 -6.49506 -4.21681 0.89815 3.39207 3.44179 3.50687 3.62278 3.84882 4.25789 4.44012 4.46912 4.51491 4.74424 4.82495 4.94651 5.08548 5.25567 5.27377 5.45011 5.47363 5.58567 5.66529 5.74952 5.93403 6.00794 6.13971 6.32680 6.46534 6.59797 6.62609 7.12919 7.20305 7.23325 7.84612 8.11351 8.33059 8.70729 9.48207 10.88518 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.041342 B = 0.005286 C = 0.005019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.118488 B = 5295.526075 C = 5577.083862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.245 3.755 3 H 0.053 0.947 4 C -0.594 4.594 5 H 0.058 0.942 6 C 0.025 3.975 7 N -0.899 5.899 8 Si 1.069 2.931 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.287 1.287 12 N -1.099 6.099 13 S 2.601 3.399 14 O -0.966 6.966 15 O -0.966 6.966 16 C -0.621 4.621 17 C 0.084 3.916 18 H 0.067 0.933 19 C -0.115 4.115 20 C -0.145 4.145 21 C 0.050 3.950 22 N -0.686 5.686 23 H 0.021 0.979 24 H 0.060 0.940 25 H 0.047 0.953 26 H 0.271 0.729 27 H 0.407 0.593 28 H 0.133 0.867 29 H 0.135 0.865 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.054 0.946 36 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.262 1.840 14.409 15.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.140 3.860 3 H 0.071 0.929 4 C -0.635 4.635 5 H 0.076 0.924 6 C -0.181 4.181 7 N -0.534 5.534 8 Si 0.896 3.104 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.213 1.213 12 N -0.858 5.858 13 S 2.693 3.307 14 O -0.956 6.956 15 O -0.956 6.956 16 C -0.749 4.749 17 C -0.027 4.027 18 H 0.085 0.915 19 C -0.154 4.154 20 C -0.184 4.184 21 C -0.079 4.079 22 N -0.317 5.317 23 H 0.040 0.960 24 H 0.079 0.921 25 H 0.066 0.934 26 H 0.082 0.918 27 H 0.240 0.760 28 H 0.151 0.849 29 H 0.153 0.847 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.272 1.882 13.187 13.989 hybrid contribution -0.921 0.186 1.588 1.845 sum -5.193 2.068 14.775 15.797 Atomic orbital electron populations 1.22507 0.99584 1.00178 0.99741 1.18773 0.89681 0.93947 0.83576 0.92884 1.21961 1.49142 0.96177 0.96189 0.92384 1.25904 0.95704 0.95545 1.00941 1.70804 1.35703 1.11746 1.35192 0.83551 0.76356 0.75096 0.75361 1.20632 1.21197 1.21305 1.55776 1.83921 1.19076 1.27073 1.05118 0.76791 0.75027 0.73733 1.93537 1.79675 1.58276 1.64146 1.93589 1.60763 1.61697 1.79549 1.30769 1.26146 1.12094 1.05881 1.22011 0.97830 0.92837 0.90014 0.91477 1.22698 0.96486 1.01414 0.94828 1.22837 1.00205 0.98617 0.96729 1.22576 0.97528 0.96545 0.91286 1.61750 1.12796 1.54005 1.03142 0.95978 0.92124 0.93416 0.91812 0.75951 0.84925 0.84686 0.90339 0.90097 0.90497 0.91275 0.90420 0.92734 0.83735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.28 9.34 37.16 0.35 -2.93 16 2 C 0.24 5.81 2.45 -69.08 -0.17 5.64 16 3 H 0.05 1.38 6.21 -51.93 -0.32 1.06 16 4 C -0.59 -15.93 8.55 -34.44 -0.29 -16.23 16 5 H 0.06 1.53 7.83 -52.49 -0.41 1.12 16 6 C 0.03 0.70 5.44 -17.82 -0.10 0.60 16 7 N -0.90 -26.12 13.55 55.43 0.75 -25.36 16 8 Si 1.07 24.47 29.91 -169.99 -5.08 19.38 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.20 7.11 56.52 0.40 -5.79 16 12 N -1.10 -22.73 5.35 -5.88 -0.03 -22.76 16 13 S 2.60 49.23 5.25 -107.50 -0.56 48.66 16 14 O -0.97 -19.42 17.25 -57.54 -0.99 -20.41 16 15 O -0.97 -22.11 17.39 -57.54 -1.00 -23.11 16 16 C -0.62 -9.06 5.09 37.16 0.19 -8.88 16 17 C 0.08 1.10 3.31 -66.18 -0.22 0.88 16 18 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 19 C -0.12 -1.20 6.50 -24.59 -0.16 -1.36 16 20 C -0.15 -1.27 6.94 -24.91 -0.17 -1.45 16 21 C 0.05 0.50 7.58 -2.84 -0.02 0.47 16 22 N -0.69 -8.96 6.14 -103.84 -0.64 -9.59 16 23 H 0.02 0.37 5.90 -51.93 -0.31 0.06 16 24 H 0.06 1.32 7.97 -51.93 -0.41 0.91 16 25 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.27 7.70 6.64 -40.82 -0.27 7.43 16 27 H 0.41 7.91 8.79 -34.47 -0.30 7.61 16 28 H 0.13 1.85 6.69 -51.93 -0.35 1.50 16 29 H 0.13 1.80 8.14 -51.92 -0.42 1.38 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 0.83 8.06 -51.93 -0.42 0.41 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.35 4.50 8.72 -39.29 -0.34 4.15 16 LS Contribution 303.32 15.07 4.57 4.57 Total: -1.00 -33.28 303.32 -8.90 -42.18 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -5.31 Total: 9.69 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: -0.60 Total: -23.25 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: 0.08 Total: -57.72 kcal Atomic # 8 Polarization: -41.52 SS G_CDS: -1.99 Total: -43.52 kcal Atomic # 14 Polarization: 24.47 SS G_CDS: -5.08 Total: 19.38 kcal Atomic # 16 Polarization: 49.23 SS G_CDS: -0.56 Total: 48.66 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.28 -8.90 -42.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722266392.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.519 kcal (2) G-P(sol) polarization free energy of solvation -33.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds