Wall clock time and date at job start Mon Mar 30 2020 05:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46602 * 2 1 4 4 C 1.50698 * 109.47360 * 239.99967 * 2 1 3 5 5 H 1.08001 * 119.99409 * 271.12170 * 4 2 1 6 6 C 1.37872 * 119.99844 * 91.12126 * 4 2 1 7 7 N 1.31511 * 120.00185 * 352.40758 * 6 4 2 8 8 Si 1.86807 * 119.99475 * 172.41194 * 6 4 2 9 9 H 1.48499 * 109.46835 * 179.97438 * 8 6 4 10 10 H 1.48497 * 109.47071 * 299.99636 * 8 6 4 11 11 H 1.48496 * 109.47333 * 60.00065 * 8 6 4 12 12 N 1.46499 * 109.46817 * 119.99784 * 2 1 3 13 13 S 1.65605 * 120.00031 * 265.00263 * 12 2 1 14 14 O 1.42099 * 104.27764 * 181.07170 * 13 12 2 15 15 O 1.42100 * 104.27608 * 308.93010 * 13 12 2 16 16 C 1.81395 * 104.45068 * 64.99890 * 13 12 2 17 17 C 1.53004 * 109.47360 * 180.02562 * 16 13 12 18 18 H 1.09003 * 110.33102 * 60.79932 * 17 16 13 19 19 C 1.54903 * 110.37269 * 183.17666 * 17 16 13 20 20 C 1.55142 * 101.65018 * 155.90085 * 19 17 16 21 21 C 1.54315 * 103.01807 * 324.34136 * 20 19 17 22 22 N 1.47442 * 107.23648 * 22.28719 * 21 20 19 23 23 H 1.08999 * 109.47483 * 305.59694 * 1 2 3 24 24 H 1.09000 * 109.46949 * 65.59737 * 1 2 3 25 25 H 1.09001 * 109.46791 * 185.59443 * 1 2 3 26 26 H 0.96996 * 120.00008 * 354.79306 * 7 6 4 27 27 H 0.97002 * 120.00250 * 85.00167 * 12 2 1 28 28 H 1.08996 * 109.47387 * 300.00235 * 16 13 12 29 29 H 1.09004 * 109.46821 * 60.00190 * 16 13 12 30 30 H 1.09000 * 110.98690 * 273.98469 * 19 17 16 31 31 H 1.08998 * 110.99373 * 37.80817 * 19 17 16 32 32 H 1.09001 * 110.70428 * 205.96221 * 20 19 17 33 33 H 1.09001 * 110.85663 * 82.79416 * 20 19 17 34 34 H 1.09000 * 109.89322 * 262.87763 * 21 20 19 35 35 H 1.09005 * 110.02008 * 141.76934 * 21 20 19 36 36 H 1.00901 * 111.00238 * 123.24845 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2304 5 1 2.1952 -1.7779 -1.2089 6 6 2.2843 0.0024 -2.3834 7 7 1.9470 1.2713 -2.4590 8 14 3.1045 -0.8344 -3.8383 9 1 3.2617 0.1415 -4.9465 10 1 4.4397 -1.3400 -3.4303 11 1 2.2635 -1.9699 -4.2950 12 7 2.0183 -0.6906 1.1962 13 16 2.4121 0.1773 2.5506 14 8 2.8605 -0.8028 3.4767 15 8 3.2874 1.1907 2.0752 16 6 0.8407 0.8990 3.0985 17 6 1.0751 1.7352 4.3581 18 1 1.7722 2.5469 4.1496 19 6 -0.2669 2.2968 4.8901 20 6 0.0613 2.5254 6.3891 21 6 1.0006 1.3473 6.7228 22 7 1.5887 0.8841 5.4526 23 1 -0.3634 0.5982 0.8356 24 1 -0.3633 0.4246 -0.9359 25 1 -0.3633 -1.0228 0.1002 26 1 1.4539 1.6861 -1.7339 27 1 2.1110 -1.6562 1.1950 28 1 0.4386 1.5353 2.3101 29 1 0.1315 0.1010 3.3184 30 1 -0.5194 3.2361 4.3982 31 1 -1.0691 1.5682 4.7727 32 1 -0.8447 2.4790 6.9934 33 1 0.5713 3.4778 6.5339 34 1 0.4328 0.5397 7.1849 35 1 1.7897 1.6789 7.3977 36 1 2.5966 0.9117 5.4895 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722266392.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:53 Heat of formation + Delta-G solvation = -110.834377 kcal Electronic energy + Delta-G solvation = -18693.806770 eV Core-core repulsion = 15724.249427 eV Total energy + Delta-G solvation = -2969.557343 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.68140 -38.13998 -37.46962 -36.91680 -34.15651 -32.78903 -31.23684 -30.17405 -27.24864 -26.66432 -23.05922 -22.12048 -21.67747 -20.21365 -19.47246 -18.52579 -18.04938 -17.23858 -16.82217 -16.33804 -15.80603 -15.52812 -15.11476 -14.97702 -14.30352 -14.00611 -13.73344 -13.58999 -13.28620 -13.21289 -13.08731 -13.01371 -12.95841 -12.76314 -12.61067 -12.50348 -12.15889 -12.11193 -11.91765 -11.67443 -11.41443 -10.77902 -10.63776 -9.98512 -9.60199 -8.64226 -6.36523 -0.59969 1.56104 1.62920 1.82410 1.92254 2.58214 2.85761 2.90864 3.17858 3.37245 3.51768 3.65293 3.94078 4.02018 4.10936 4.25360 4.38118 4.52668 4.59305 4.63367 4.75864 4.79686 4.91907 4.94356 4.95915 5.08510 5.29019 5.40209 5.51867 5.72210 5.94690 6.16268 6.18956 6.39643 6.58884 7.41067 8.75459 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.041342 B = 0.005286 C = 0.005019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.118488 B = 5295.526075 C = 5577.083862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.244 3.756 3 H 0.024 0.976 4 C -0.611 4.611 5 H 0.057 0.943 6 C -0.025 4.025 7 N -0.930 5.930 8 Si 1.111 2.889 9 H -0.284 1.284 10 H -0.279 1.279 11 H -0.264 1.264 12 N -1.106 6.106 13 S 2.604 3.396 14 O -0.981 6.981 15 O -1.015 7.015 16 C -0.592 4.592 17 C 0.073 3.927 18 H 0.066 0.934 19 C -0.113 4.113 20 C -0.139 4.139 21 C 0.044 3.956 22 N -0.704 5.704 23 H 0.058 0.942 24 H 0.041 0.959 25 H 0.059 0.941 26 H 0.262 0.738 27 H 0.411 0.589 28 H 0.145 0.855 29 H 0.157 0.843 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.813 1.675 15.800 17.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.138 3.862 3 H 0.042 0.958 4 C -0.651 4.651 5 H 0.075 0.925 6 C -0.225 4.225 7 N -0.567 5.567 8 Si 0.933 3.067 9 H -0.210 1.210 10 H -0.205 1.205 11 H -0.189 1.189 12 N -0.864 5.864 13 S 2.701 3.299 14 O -0.971 6.971 15 O -1.005 7.005 16 C -0.725 4.725 17 C -0.039 4.039 18 H 0.084 0.916 19 C -0.152 4.152 20 C -0.177 4.177 21 C -0.085 4.085 22 N -0.335 5.335 23 H 0.077 0.923 24 H 0.061 0.939 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.245 0.755 28 H 0.163 0.837 29 H 0.175 0.825 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.115 0.885 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.790 1.671 14.568 15.765 hybrid contribution -0.461 0.230 1.331 1.427 sum -6.251 1.901 15.899 17.189 Atomic orbital electron populations 1.22327 0.96801 1.01582 1.00374 1.18612 0.91709 0.92247 0.83599 0.95772 1.22375 1.48725 0.96409 0.97585 0.92508 1.27184 0.96005 0.95591 1.03756 1.70898 1.37603 1.12802 1.35370 0.83017 0.76169 0.74872 0.72685 1.20959 1.20476 1.18927 1.55545 1.84292 1.19280 1.27280 1.04811 0.78031 0.74161 0.72886 1.93513 1.80983 1.58901 1.63703 1.93528 1.64066 1.62577 1.80317 1.30509 1.21942 1.12887 1.07180 1.22192 0.99788 0.92525 0.89377 0.91635 1.22747 0.94658 1.01968 0.95856 1.22841 1.00766 0.98344 0.95740 1.22715 0.98236 0.97340 0.90175 1.61768 1.12680 1.54554 1.04525 0.92283 0.93943 0.92177 0.92721 0.75506 0.83741 0.82495 0.89029 0.89592 0.88533 0.90438 0.90047 0.91439 0.84293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.99 9.34 71.98 0.67 -5.32 16 2 C 0.24 11.63 2.45 44.25 0.11 11.73 16 3 H 0.02 1.30 6.21 -2.39 -0.01 1.29 16 4 C -0.61 -33.06 8.55 25.60 0.22 -32.84 16 5 H 0.06 3.00 7.83 -2.91 -0.02 2.98 16 6 C -0.03 -1.41 5.44 84.65 0.46 -0.95 16 7 N -0.93 -55.16 13.55 21.45 0.29 -54.87 16 8 Si 1.11 49.42 29.91 68.60 2.05 51.48 16 9 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 10 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 11 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 12 N -1.11 -45.57 5.35 -172.51 -0.92 -46.50 16 13 S 2.60 97.95 5.25 -56.49 -0.30 97.66 16 14 O -0.98 -39.13 17.25 -127.65 -2.20 -41.33 16 15 O -1.01 -47.58 17.39 -127.65 -2.22 -49.81 16 16 C -0.59 -15.93 5.09 71.98 0.37 -15.57 16 17 C 0.07 1.73 3.31 45.38 0.15 1.88 16 18 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 19 C -0.11 -1.95 6.50 31.98 0.21 -1.74 16 20 C -0.14 -1.93 6.94 31.77 0.22 -1.71 16 21 C 0.04 0.75 7.58 86.65 0.66 1.41 16 22 N -0.70 -17.06 6.14 -482.44 -2.96 -20.03 16 23 H 0.06 1.85 5.90 -2.39 -0.01 1.84 16 24 H 0.04 1.82 7.97 -2.39 -0.02 1.80 16 25 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.26 15.40 6.64 -92.71 -0.62 14.78 16 27 H 0.41 15.93 8.79 -96.74 -0.85 15.08 16 28 H 0.14 3.64 6.69 -2.39 -0.02 3.62 16 29 H 0.16 3.63 8.14 -2.39 -0.02 3.62 16 30 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.09 1.41 8.06 -2.39 -0.02 1.39 16 32 H 0.10 1.00 8.14 -2.39 -0.02 0.99 16 33 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.34 8.59 8.72 -89.69 -0.78 7.81 16 Total: -1.00 -72.64 303.32 -3.59 -76.23 By element: Atomic # 1 Polarization: 30.66 SS G_CDS: -0.39 Total: 30.27 kcal Atomic # 6 Polarization: -46.17 SS G_CDS: 3.06 Total: -43.11 kcal Atomic # 7 Polarization: -117.79 SS G_CDS: -3.60 Total: -121.39 kcal Atomic # 8 Polarization: -86.72 SS G_CDS: -4.42 Total: -91.14 kcal Atomic # 14 Polarization: 49.42 SS G_CDS: 2.05 Total: 51.48 kcal Atomic # 16 Polarization: 97.95 SS G_CDS: -0.30 Total: 97.66 kcal Total: -72.64 -3.59 -76.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722266392.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.603 kcal (2) G-P(sol) polarization free energy of solvation -72.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds