Wall clock time and date at job start Mon Mar 30 2020 05:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 110.91401 * 2 1 4 4 C 1.54913 * 111.00242 * 236.10539 * 2 1 3 5 5 N 1.47422 * 104.82910 * 204.91417 * 4 2 1 6 6 S 1.65600 * 125.64698 * 204.08826 * 5 4 2 7 7 O 1.42094 * 106.40399 * 336.48287 * 6 5 4 8 8 O 1.42107 * 106.40194 * 203.56395 * 6 5 4 9 9 C 1.76203 * 107.21803 * 90.02676 * 6 5 4 10 10 H 1.08002 * 119.99736 * 359.97438 * 9 6 5 11 11 C 1.37871 * 119.99719 * 180.27922 * 9 6 5 12 12 N 1.31514 * 120.00482 * 359.71484 * 11 9 6 13 13 Si 1.86801 * 119.99746 * 179.72079 * 11 9 6 14 14 H 1.48494 * 109.47230 * 359.97438 * 13 11 9 15 15 H 1.48505 * 109.47301 * 119.99669 * 13 11 9 16 16 H 1.48498 * 109.47430 * 239.99516 * 13 11 9 17 17 C 1.47028 * 108.70373 * 24.35254 * 5 4 2 18 18 C 1.54329 * 107.26661 * 358.58520 * 17 5 4 19 19 H 1.08996 * 110.66898 * 96.52142 * 18 17 5 20 20 C 1.52997 * 110.85041 * 219.67449 * 18 17 5 21 21 C 1.52997 * 109.47306 * 288.69009 * 20 18 17 22 22 N 1.46895 * 109.47371 * 179.97438 * 21 20 18 23 23 H 1.08996 * 109.46949 * 182.44769 * 1 2 3 24 24 H 1.09005 * 109.46926 * 302.44755 * 1 2 3 25 25 H 1.08999 * 109.47645 * 62.44544 * 1 2 3 26 26 H 1.08990 * 110.36855 * 86.07394 * 4 2 1 27 27 H 1.08996 * 110.45289 * 323.79332 * 4 2 1 28 28 H 0.96995 * 120.00207 * 179.97438 * 12 11 9 29 29 H 1.09000 * 109.88189 * 118.13553 * 17 5 4 30 30 H 1.08997 * 109.87921 * 239.29506 * 17 5 4 31 31 H 1.08998 * 109.47556 * 48.69566 * 20 18 17 32 32 H 1.09003 * 109.47415 * 168.69104 * 20 18 17 33 33 H 1.08998 * 109.47268 * 300.00734 * 21 20 18 34 34 H 1.09003 * 109.46806 * 59.99722 * 21 20 18 35 35 H 1.00905 * 111.00088 * 56.05186 * 22 21 20 36 36 H 1.00896 * 111.00297 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0852 -0.8065 -1.2005 5 7 3.4271 -1.2429 -0.7735 6 16 4.6810 -1.6343 -1.7820 7 8 4.0971 -2.0033 -3.0237 8 8 5.5391 -2.4913 -1.0414 9 6 5.5915 -0.1555 -2.0802 10 1 5.2786 0.7724 -1.6247 11 6 6.6996 -0.1818 -2.9001 12 7 7.0804 -1.3116 -3.4551 13 14 7.6603 1.3875 -3.2225 14 1 7.0309 2.5132 -2.4866 15 1 9.0608 1.2145 -2.7598 16 1 7.6528 1.6824 -4.6779 17 6 3.4658 -1.2793 0.6958 18 6 2.0863 -0.8079 1.2022 19 1 1.4452 -1.6613 1.4228 20 6 2.2351 0.0876 2.4337 21 6 2.6653 -0.7607 3.6321 22 7 2.8088 0.0991 4.8145 23 1 -0.3633 -1.0267 0.0439 24 1 -0.3633 0.5514 0.8673 25 1 -0.3634 0.4754 -0.9111 26 1 2.1559 -0.1719 -2.0837 27 1 1.4525 -1.6702 -1.4043 28 1 7.8598 -1.3300 -4.0322 29 1 3.6602 -2.2963 1.0364 30 1 4.2424 -0.6084 1.0629 31 1 2.9889 0.8505 2.2393 32 1 1.2808 0.5671 2.6519 33 1 1.9115 -1.5237 3.8265 34 1 3.6195 -1.2402 3.4140 35 1 1.9555 0.6049 4.9995 36 1 3.0929 -0.4380 5.6199 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723887654.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:10 Heat of formation + Delta-G solvation = -107.277015 kcal Electronic energy + Delta-G solvation = -18690.485082 eV Core-core repulsion = 15721.081998 eV Total energy + Delta-G solvation = -2969.403084 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.82709 -35.31732 -35.16496 -33.92077 -33.07672 -32.17335 -30.81720 -26.44577 -26.09326 -25.52400 -22.75411 -20.53146 -19.89422 -18.69720 -17.32367 -16.41116 -16.10817 -15.30688 -15.11756 -14.76916 -14.21426 -13.98905 -13.68026 -13.54679 -13.23470 -12.69107 -12.50232 -12.14116 -11.99590 -11.77831 -11.43562 -11.36092 -11.20972 -11.15832 -10.56216 -10.52235 -10.48991 -10.25850 -10.21819 -10.12806 -10.09571 -9.23070 -8.87783 -8.82262 -8.09091 -6.66630 -5.28331 2.28056 3.07633 3.15673 3.23566 4.08865 4.36608 4.59768 4.62435 4.69989 4.95907 4.98513 5.21192 5.28851 5.44333 5.58878 5.60004 5.65985 5.77673 5.82456 5.91062 5.99574 6.03893 6.13811 6.19090 6.24264 6.29576 6.38907 6.45574 6.61800 6.95744 6.99878 7.28159 7.36743 7.53141 8.02663 8.92306 10.26877 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.021765 B = 0.006440 C = 0.005942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.168876 B = 4346.845100 C = 4711.137087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.101 4.101 3 H 0.085 0.915 4 C 0.130 3.870 5 N -1.022 6.022 6 S 2.727 3.273 7 O -1.002 7.002 8 O -1.002 7.002 9 C -1.018 5.018 10 H 0.102 0.898 11 C 0.132 3.868 12 N -0.847 5.847 13 Si 0.920 3.080 14 H -0.262 1.262 15 H -0.271 1.271 16 H -0.271 1.271 17 C 0.129 3.871 18 C -0.093 4.093 19 H 0.079 0.921 20 C -0.107 4.107 21 C 0.057 3.943 22 N -0.853 5.853 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.290 0.710 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.025 0.975 34 H 0.077 0.923 35 H 0.337 0.663 36 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.418 3.879 11.133 16.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.121 4.121 3 H 0.103 0.897 4 C 0.004 3.996 5 N -0.857 5.857 6 S 2.829 3.171 7 O -0.993 6.993 8 O -0.993 6.993 9 C -1.152 5.152 10 H 0.121 0.879 11 C -0.086 4.086 12 N -0.477 5.477 13 Si 0.744 3.256 14 H -0.186 1.186 15 H -0.196 1.196 16 H -0.196 1.196 17 C 0.003 3.997 18 C -0.114 4.114 19 H 0.098 0.902 20 C -0.145 4.145 21 C -0.074 4.074 22 N -0.382 5.382 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.100 0.900 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.043 0.957 34 H 0.096 0.904 35 H 0.149 0.851 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.490 3.206 10.204 14.981 hybrid contribution -0.065 0.792 0.272 0.840 sum -10.555 3.998 10.476 15.399 Atomic orbital electron populations 1.21699 0.94524 1.01817 1.01638 1.22435 0.95303 0.99737 0.94615 0.89676 1.21826 0.83771 0.97281 0.96728 1.59153 1.25512 1.85366 1.15704 1.00144 0.70607 0.75477 0.70870 1.93355 1.78489 1.84609 1.42841 1.93353 1.64936 1.67763 1.73238 1.30653 1.25708 1.17136 1.41675 0.87927 1.24764 0.94867 0.98025 0.90902 1.69904 1.24855 1.26457 1.26497 0.86135 0.79235 0.81467 0.78738 1.18593 1.19579 1.19607 1.21603 0.96613 1.00632 0.80852 1.22294 0.96740 0.98077 0.94256 0.90243 1.21571 1.01653 0.98224 0.93028 1.21893 1.00879 0.94125 0.90492 1.58699 1.39317 1.32657 1.07485 0.92570 0.92694 0.92353 0.90860 0.92438 0.89955 0.92180 0.91766 0.90567 0.92041 0.95682 0.90439 0.85126 0.84806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.29 37.16 0.35 -1.07 16 2 C -0.10 -1.34 3.09 -88.47 -0.27 -1.61 16 3 H 0.08 1.13 8.05 -51.93 -0.42 0.71 16 4 C 0.13 2.25 6.45 -2.53 -0.02 2.24 16 5 N -1.02 -21.55 3.70 -111.42 -0.41 -21.96 16 6 S 2.73 75.02 5.22 -107.50 -0.56 74.46 16 7 O -1.00 -30.09 17.60 -57.17 -1.01 -31.10 16 8 O -1.00 -30.16 17.60 -57.17 -1.01 -31.17 16 9 C -1.02 -28.80 9.75 30.60 0.30 -28.51 16 10 H 0.10 2.69 7.81 -52.49 -0.41 2.28 16 11 C 0.13 3.77 5.46 -17.82 -0.10 3.67 16 12 N -0.85 -25.41 13.19 55.43 0.73 -24.68 16 13 Si 0.92 21.00 29.54 -169.99 -5.02 15.98 16 14 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16 15 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 16 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 17 C 0.13 2.26 5.99 -3.06 -0.02 2.24 16 18 C -0.09 -1.21 2.39 -88.79 -0.21 -1.42 16 19 H 0.08 0.94 8.01 -51.93 -0.42 0.52 16 20 C -0.11 -1.19 4.88 -26.73 -0.13 -1.32 16 21 C 0.06 0.59 6.67 -3.83 -0.03 0.57 16 22 N -0.85 -8.03 9.62 -10.37 -0.10 -8.13 16 23 H 0.06 0.55 8.11 -51.93 -0.42 0.13 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.06 0.93 8.04 -51.93 -0.42 0.52 16 28 H 0.29 7.77 8.31 -40.82 -0.34 7.43 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.06 1.13 7.69 -51.93 -0.40 0.73 16 31 H 0.08 0.96 7.94 -51.93 -0.41 0.55 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 34 H 0.08 0.91 7.68 -51.93 -0.40 0.52 16 35 H 0.34 2.61 8.99 -39.29 -0.35 2.25 16 36 H 0.34 2.65 9.08 -39.29 -0.36 2.30 16 LS Contribution 310.33 15.07 4.68 4.68 Total: -1.00 -35.48 310.33 -8.50 -43.98 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -5.67 Total: 3.16 kcal Atomic # 6 Polarization: -25.08 SS G_CDS: -0.13 Total: -25.21 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: 0.22 Total: -54.78 kcal Atomic # 8 Polarization: -60.26 SS G_CDS: -2.01 Total: -62.27 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 75.02 SS G_CDS: -0.56 Total: 74.46 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -35.48 -8.50 -43.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723887654.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.297 kcal (2) G-P(sol) polarization free energy of solvation -35.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds