Wall clock time and date at job start Mon Mar 30 2020 05:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 110.91401 * 2 1 4 4 C 1.54913 * 111.00242 * 236.10539 * 2 1 3 5 5 N 1.47422 * 104.82910 * 204.91417 * 4 2 1 6 6 S 1.65600 * 125.64698 * 204.08826 * 5 4 2 7 7 O 1.42094 * 106.40399 * 336.48287 * 6 5 4 8 8 O 1.42107 * 106.40194 * 203.56395 * 6 5 4 9 9 C 1.76203 * 107.21803 * 90.02676 * 6 5 4 10 10 H 1.08002 * 119.99736 * 359.97438 * 9 6 5 11 11 C 1.37871 * 119.99719 * 180.27922 * 9 6 5 12 12 N 1.31514 * 120.00482 * 359.71484 * 11 9 6 13 13 Si 1.86801 * 119.99746 * 179.72079 * 11 9 6 14 14 H 1.48494 * 109.47230 * 359.97438 * 13 11 9 15 15 H 1.48505 * 109.47301 * 119.99669 * 13 11 9 16 16 H 1.48498 * 109.47430 * 239.99516 * 13 11 9 17 17 C 1.47028 * 108.70373 * 24.35254 * 5 4 2 18 18 C 1.54329 * 107.26661 * 358.58520 * 17 5 4 19 19 H 1.08996 * 110.66898 * 96.52142 * 18 17 5 20 20 C 1.52997 * 110.85041 * 219.67449 * 18 17 5 21 21 C 1.52997 * 109.47306 * 288.69009 * 20 18 17 22 22 N 1.46895 * 109.47371 * 179.97438 * 21 20 18 23 23 H 1.08996 * 109.46949 * 182.44769 * 1 2 3 24 24 H 1.09005 * 109.46926 * 302.44755 * 1 2 3 25 25 H 1.08999 * 109.47645 * 62.44544 * 1 2 3 26 26 H 1.08990 * 110.36855 * 86.07394 * 4 2 1 27 27 H 1.08996 * 110.45289 * 323.79332 * 4 2 1 28 28 H 0.96995 * 120.00207 * 179.97438 * 12 11 9 29 29 H 1.09000 * 109.88189 * 118.13553 * 17 5 4 30 30 H 1.08997 * 109.87921 * 239.29506 * 17 5 4 31 31 H 1.08998 * 109.47556 * 48.69566 * 20 18 17 32 32 H 1.09003 * 109.47415 * 168.69104 * 20 18 17 33 33 H 1.08998 * 109.47268 * 300.00734 * 21 20 18 34 34 H 1.09003 * 109.46806 * 59.99722 * 21 20 18 35 35 H 1.00905 * 111.00088 * 56.05186 * 22 21 20 36 36 H 1.00896 * 111.00297 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0852 -0.8065 -1.2005 5 7 3.4271 -1.2429 -0.7735 6 16 4.6810 -1.6343 -1.7820 7 8 4.0971 -2.0033 -3.0237 8 8 5.5391 -2.4913 -1.0414 9 6 5.5915 -0.1555 -2.0802 10 1 5.2786 0.7724 -1.6247 11 6 6.6996 -0.1818 -2.9001 12 7 7.0804 -1.3116 -3.4551 13 14 7.6603 1.3875 -3.2225 14 1 7.0309 2.5132 -2.4866 15 1 9.0608 1.2145 -2.7598 16 1 7.6528 1.6824 -4.6779 17 6 3.4658 -1.2793 0.6958 18 6 2.0863 -0.8079 1.2022 19 1 1.4452 -1.6613 1.4228 20 6 2.2351 0.0876 2.4337 21 6 2.6653 -0.7607 3.6321 22 7 2.8088 0.0991 4.8145 23 1 -0.3633 -1.0267 0.0439 24 1 -0.3633 0.5514 0.8673 25 1 -0.3634 0.4754 -0.9111 26 1 2.1559 -0.1719 -2.0837 27 1 1.4525 -1.6702 -1.4043 28 1 7.8598 -1.3300 -4.0322 29 1 3.6602 -2.2963 1.0364 30 1 4.2424 -0.6084 1.0629 31 1 2.9889 0.8505 2.2393 32 1 1.2808 0.5671 2.6519 33 1 1.9115 -1.5237 3.8265 34 1 3.6195 -1.2402 3.4140 35 1 1.9555 0.6049 4.9995 36 1 3.0929 -0.4380 5.6199 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723887654.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:10 Heat of formation + Delta-G solvation = -136.905773 kcal Electronic energy + Delta-G solvation = -18691.769881 eV Core-core repulsion = 15721.081998 eV Total energy + Delta-G solvation = -2970.687884 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.06263 -37.47492 -36.21504 -36.20150 -35.22682 -33.44733 -31.81979 -28.30876 -27.60347 -26.67217 -23.86514 -21.65501 -21.00394 -20.75887 -19.22673 -18.29804 -17.42855 -16.99095 -16.45298 -16.07609 -15.85164 -15.63728 -14.90205 -14.77986 -14.40521 -14.05378 -14.02815 -13.72466 -13.40865 -13.27488 -13.05333 -12.86425 -12.59525 -12.53557 -12.35475 -12.33092 -12.31189 -11.95492 -11.52140 -11.49286 -11.29747 -11.18369 -11.00562 -9.78379 -9.53534 -8.78081 -7.53041 0.23323 1.30555 1.30903 1.49545 2.18122 2.53273 2.86696 3.48146 3.58396 3.65982 3.75637 4.06909 4.25370 4.32380 4.36298 4.46413 4.54210 4.62688 4.65152 4.68704 4.81475 4.85536 4.98423 5.05121 5.14115 5.18845 5.27456 5.32920 5.41006 5.44540 5.59006 5.82098 5.87708 6.30568 6.68856 6.73634 8.17576 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.021765 B = 0.006440 C = 0.005942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.168876 B = 4346.845100 C = 4711.137087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.090 4.090 3 H 0.085 0.915 4 C 0.114 3.886 5 N -1.025 6.025 6 S 2.730 3.270 7 O -1.040 7.040 8 O -1.041 7.041 9 C -1.039 5.039 10 H 0.116 0.884 11 C 0.068 3.932 12 N -0.895 5.895 13 Si 0.993 3.007 14 H -0.248 1.248 15 H -0.257 1.257 16 H -0.256 1.256 17 C 0.117 3.883 18 C -0.079 4.079 19 H 0.099 0.901 20 C -0.098 4.098 21 C 0.057 3.943 22 N -0.862 5.862 23 H 0.062 0.938 24 H 0.079 0.921 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.300 0.700 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.041 0.959 34 H 0.056 0.944 35 H 0.349 0.651 36 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.872 5.936 12.508 18.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.110 4.110 3 H 0.104 0.896 4 C -0.011 4.011 5 N -0.864 5.864 6 S 2.834 3.166 7 O -1.030 7.030 8 O -1.032 7.032 9 C -1.173 5.173 10 H 0.135 0.865 11 C -0.145 4.145 12 N -0.527 5.527 13 Si 0.810 3.190 14 H -0.171 1.171 15 H -0.181 1.181 16 H -0.180 1.180 17 C -0.008 4.008 18 C -0.099 4.099 19 H 0.117 0.883 20 C -0.137 4.137 21 C -0.074 4.074 22 N -0.393 5.393 23 H 0.081 0.919 24 H 0.097 0.903 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.110 0.890 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.107 0.893 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.162 0.838 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -11.963 5.243 11.588 17.461 hybrid contribution 0.328 0.107 -0.105 0.361 sum -11.635 5.351 11.483 17.201 Atomic orbital electron populations 1.21686 0.91481 1.02830 1.03090 1.22424 0.97556 0.98819 0.92183 0.89638 1.22229 0.82060 0.98278 0.98517 1.58610 1.25611 1.85261 1.16870 0.99587 0.71029 0.75447 0.70583 1.93291 1.79191 1.85335 1.45201 1.93287 1.66904 1.69178 1.73814 1.30973 1.26413 1.17751 1.42157 0.86544 1.26082 0.95977 1.02198 0.90219 1.69991 1.25999 1.29160 1.27522 0.85073 0.77898 0.76442 0.79562 1.17087 1.18123 1.17995 1.21933 0.99720 1.00546 0.78638 1.22278 0.93753 0.99061 0.94827 0.88258 1.21498 1.02576 0.97434 0.92149 1.21813 1.00285 0.94479 0.90786 1.58645 1.40216 1.32850 1.07572 0.91898 0.90253 0.91852 0.91924 0.91493 0.88986 0.92723 0.92597 0.92232 0.89277 0.94118 0.92526 0.83822 0.83824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 9.29 71.98 0.67 -1.54 16 2 C -0.09 -2.17 3.09 -9.40 -0.03 -2.20 16 3 H 0.09 2.08 8.05 -2.38 -0.02 2.06 16 4 C 0.11 3.91 6.45 86.86 0.56 4.47 16 5 N -1.02 -44.02 3.70 -506.42 -1.87 -45.89 16 6 S 2.73 155.81 5.22 -56.49 -0.29 155.51 16 7 O -1.04 -65.03 17.60 -128.00 -2.25 -67.29 16 8 O -1.04 -65.51 17.60 -128.00 -2.25 -67.77 16 9 C -1.04 -59.89 9.75 67.73 0.66 -59.23 16 10 H 0.12 6.13 7.81 -2.91 -0.02 6.11 16 11 C 0.07 3.90 5.46 84.65 0.46 4.36 16 12 N -0.90 -55.02 13.19 21.45 0.28 -54.73 16 13 Si 0.99 42.48 29.54 68.60 2.03 44.51 16 14 H -0.25 -9.92 7.11 99.48 0.71 -9.22 16 15 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 16 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 17 C 0.12 4.10 5.99 86.73 0.52 4.62 16 18 C -0.08 -1.87 2.39 -9.61 -0.02 -1.90 16 19 H 0.10 2.02 8.01 -2.39 -0.02 2.00 16 20 C -0.10 -1.92 4.88 30.59 0.15 -1.77 16 21 C 0.06 1.08 6.67 86.30 0.58 1.65 16 22 N -0.86 -14.26 9.62 -186.73 -1.80 -16.06 16 23 H 0.06 0.99 8.11 -2.39 -0.02 0.97 16 24 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 25 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.07 2.14 8.04 -2.39 -0.02 2.12 16 28 H 0.30 16.41 8.31 -92.71 -0.77 15.64 16 29 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.06 2.02 7.69 -2.39 -0.02 2.00 16 31 H 0.06 1.39 7.94 -2.39 -0.02 1.37 16 32 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.06 1.30 7.68 -2.39 -0.02 1.28 16 35 H 0.35 4.35 8.99 -89.69 -0.81 3.55 16 36 H 0.35 4.75 9.08 -89.70 -0.81 3.94 16 Total: -1.00 -79.44 310.33 -3.16 -82.60 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: -0.54 Total: 20.65 kcal Atomic # 6 Polarization: -55.08 SS G_CDS: 3.54 Total: -51.53 kcal Atomic # 7 Polarization: -113.30 SS G_CDS: -3.39 Total: -116.69 kcal Atomic # 8 Polarization: -130.55 SS G_CDS: -4.51 Total: -135.05 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Atomic # 16 Polarization: 155.81 SS G_CDS: -0.29 Total: 155.51 kcal Total: -79.44 -3.16 -82.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723887654.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.304 kcal (2) G-P(sol) polarization free energy of solvation -79.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds