Wall clock time and date at job start Mon Mar 30 2020 05:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 110.77503 * 2 1 4 4 C 1.54320 * 110.72308 * 236.75787 * 2 1 3 5 5 N 1.47020 * 107.27190 * 263.82885 * 4 2 1 6 6 S 1.65600 * 125.64912 * 181.01888 * 5 4 2 7 7 O 1.42103 * 106.39991 * 336.48643 * 6 5 4 8 8 O 1.42095 * 106.40377 * 203.56427 * 6 5 4 9 9 C 1.76199 * 107.21522 * 90.02248 * 6 5 4 10 10 H 1.08002 * 120.00405 * 0.02562 * 9 6 5 11 11 C 1.37884 * 119.99836 * 179.72073 * 9 6 5 12 12 N 1.31514 * 119.99698 * 0.28505 * 11 9 6 13 13 Si 1.86794 * 119.99837 * 180.27572 * 11 9 6 14 14 H 1.48501 * 109.47188 * 90.00793 * 13 11 9 15 15 H 1.48501 * 109.47085 * 210.00372 * 13 11 9 16 16 H 1.48498 * 109.47634 * 330.00608 * 13 11 9 17 17 C 1.47429 * 108.70261 * 1.28400 * 5 4 2 18 18 C 1.55130 * 104.71927 * 335.55627 * 17 5 4 19 19 H 1.09004 * 111.22241 * 279.16985 * 18 17 5 20 20 C 1.53001 * 110.90385 * 155.27565 * 18 17 5 21 21 C 1.53002 * 109.47131 * 72.97242 * 20 18 17 22 22 N 1.46901 * 109.47025 * 179.97438 * 21 20 18 23 23 H 1.09002 * 109.46805 * 181.79092 * 1 2 3 24 24 H 1.09002 * 109.46678 * 301.78563 * 1 2 3 25 25 H 1.09000 * 109.47110 * 61.79078 * 1 2 3 26 26 H 1.08999 * 109.88688 * 144.40686 * 4 2 1 27 27 H 1.09003 * 109.88021 * 23.24541 * 4 2 1 28 28 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 29 29 H 1.09006 * 110.36075 * 94.48039 * 17 5 4 30 30 H 1.08992 * 110.36725 * 216.80430 * 17 5 4 31 31 H 1.08998 * 109.47059 * 192.96993 * 20 18 17 32 32 H 1.08997 * 109.47088 * 312.97505 * 20 18 17 33 33 H 1.08998 * 109.46946 * 299.99821 * 21 20 18 34 34 H 1.08997 * 109.46919 * 60.00161 * 21 20 18 35 35 H 1.00902 * 111.00011 * 56.04508 * 22 21 20 36 36 H 1.00896 * 111.00020 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0192 0.0000 4 6 2.0761 -0.7912 -1.2072 5 7 2.3717 -2.1531 -0.7388 6 16 3.0025 -3.3753 -1.6612 7 8 2.6848 -3.0643 -3.0109 8 8 2.6195 -4.5909 -1.0329 9 6 4.7567 -3.2773 -1.5277 10 1 5.2099 -2.5087 -0.9191 11 6 5.5507 -4.1857 -2.1952 12 7 4.9988 -5.1218 -2.9359 13 14 7.4101 -4.0865 -2.0475 14 1 7.8602 -4.9131 -0.8988 15 1 8.0336 -4.5934 -3.2963 16 1 7.8149 -2.6745 -1.8299 17 6 2.0076 -2.2524 0.6863 18 6 2.0790 -0.7953 1.2138 19 1 3.1060 -0.5067 1.4380 20 6 1.1816 -0.6138 2.4396 21 6 1.8185 -1.3079 3.6453 22 7 0.9571 -1.1332 4.8223 23 1 -0.3633 -1.0272 0.0321 24 1 -0.3633 0.5413 0.8736 25 1 -0.3633 0.4858 -0.9056 26 1 2.9869 -0.3207 -1.5776 27 1 1.3263 -0.8256 -1.9976 28 1 5.5574 -5.7607 -3.4058 29 1 0.9974 -2.6479 0.7930 30 1 2.7208 -2.8829 1.2170 31 1 1.0663 0.4491 2.6514 32 1 0.2038 -1.0532 2.2422 33 1 1.9338 -2.3709 3.4335 34 1 2.7963 -0.8686 3.8426 35 1 0.0248 -1.4743 4.6419 36 1 1.3561 -1.5833 5.6324 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723909463.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:13 Heat of formation + Delta-G solvation = -105.603023 kcal Electronic energy + Delta-G solvation = -18783.135224 eV Core-core repulsion = 15813.804729 eV Total energy + Delta-G solvation = -2969.330495 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.01084 -35.31048 -35.18185 -33.94393 -33.09693 -32.09084 -30.46605 -26.49014 -26.12073 -25.87835 -22.72254 -21.05332 -19.10885 -18.71665 -17.41424 -16.39419 -15.86752 -15.74797 -15.04160 -14.62535 -14.44622 -14.06294 -13.85795 -13.36963 -13.06608 -12.75085 -12.47350 -12.06222 -11.99294 -11.81682 -11.66837 -11.25403 -11.20984 -11.07453 -10.60585 -10.53807 -10.35368 -10.27357 -10.25065 -10.17336 -10.10928 -9.24692 -8.91217 -8.81968 -8.11091 -6.69128 -5.31209 2.25874 3.06304 3.12929 3.19674 4.06051 4.35212 4.61013 4.64857 4.69500 4.88931 5.06490 5.18699 5.32354 5.50657 5.54206 5.60872 5.67674 5.81985 5.86252 5.87817 6.00909 6.06274 6.12687 6.20022 6.25431 6.31689 6.35643 6.47252 6.57537 6.94715 6.98220 7.27620 7.34053 7.51215 7.99050 8.89358 10.24357 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.024014 B = 0.006443 C = 0.005783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.715593 B = 4344.835490 C = 4840.459206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 H 0.082 0.918 4 C 0.128 3.872 5 N -1.021 6.021 6 S 2.728 3.272 7 O -1.002 7.002 8 O -1.003 7.003 9 C -1.020 5.020 10 H 0.102 0.898 11 C 0.132 3.868 12 N -0.847 5.847 13 Si 0.921 3.079 14 H -0.267 1.267 15 H -0.274 1.274 16 H -0.263 1.263 17 C 0.132 3.868 18 C -0.097 4.097 19 H 0.085 0.915 20 C -0.105 4.105 21 C 0.054 3.946 22 N -0.854 5.854 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.291 0.709 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.033 0.967 34 H 0.071 0.929 35 H 0.339 0.661 36 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.561 9.216 10.300 14.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.100 0.900 4 C 0.002 3.998 5 N -0.857 5.857 6 S 2.830 3.170 7 O -0.993 6.993 8 O -0.993 6.993 9 C -1.153 5.153 10 H 0.120 0.880 11 C -0.086 4.086 12 N -0.477 5.477 13 Si 0.745 3.255 14 H -0.192 1.192 15 H -0.199 1.199 16 H -0.187 1.187 17 C 0.006 3.994 18 C -0.118 4.118 19 H 0.104 0.896 20 C -0.143 4.143 21 C -0.076 4.076 22 N -0.383 5.383 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.101 0.899 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.051 0.949 34 H 0.090 0.910 35 H 0.150 0.850 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.921 9.145 9.509 14.460 hybrid contribution 1.545 -0.836 0.212 1.770 sum -4.376 8.309 9.721 13.516 Atomic orbital electron populations 1.21852 0.94714 1.02100 1.01441 1.22203 0.95995 0.98932 0.94532 0.89951 1.21598 0.99756 0.82570 0.95883 1.59143 1.80701 1.25261 1.20561 1.00121 0.75734 0.69984 0.71205 1.93353 1.86668 1.84092 1.35156 1.93353 1.85486 1.43156 1.77350 1.30634 1.17791 1.24777 1.42106 0.88001 1.24766 1.01887 0.91609 0.90310 1.69900 1.38746 1.14143 1.24869 0.86162 0.81324 0.79530 0.78527 1.19208 1.19928 1.18665 1.21881 0.99786 0.95979 0.81770 1.22478 0.99864 0.95639 0.93776 0.89637 1.21549 0.98728 1.01323 0.92690 1.21904 0.96865 0.98686 0.90192 1.58776 1.06330 1.66689 1.06511 0.92355 0.92408 0.92623 0.92001 0.91915 0.89886 0.92564 0.91117 0.90999 0.91596 0.94907 0.91012 0.84955 0.84874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 7.91 37.16 0.29 -1.34 16 2 C -0.10 -1.25 3.47 -88.79 -0.31 -1.56 16 3 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 4 C 0.13 2.21 6.57 -3.07 -0.02 2.19 16 5 N -1.02 -21.24 3.70 -111.29 -0.41 -21.65 16 6 S 2.73 74.38 5.22 -107.50 -0.56 73.82 16 7 O -1.00 -29.98 17.60 -57.17 -1.01 -30.99 16 8 O -1.00 -29.87 17.60 -57.17 -1.01 -30.88 16 9 C -1.02 -28.57 9.75 30.60 0.30 -28.27 16 10 H 0.10 2.63 7.81 -52.49 -0.41 2.21 16 11 C 0.13 3.74 5.46 -17.82 -0.10 3.64 16 12 N -0.85 -25.24 13.19 55.43 0.73 -24.51 16 13 Si 0.92 20.79 29.54 -169.99 -5.02 15.77 16 14 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 15 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 16 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 17 C 0.13 2.25 5.62 -2.41 -0.01 2.24 16 18 C -0.10 -1.27 2.89 -88.35 -0.25 -1.53 16 19 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 20 C -0.10 -1.12 3.81 -26.73 -0.10 -1.22 16 21 C 0.05 0.57 6.69 -3.82 -0.03 0.54 16 22 N -0.85 -7.83 9.62 -10.37 -0.10 -7.93 16 23 H 0.06 0.72 7.32 -51.93 -0.38 0.34 16 24 H 0.06 0.55 7.12 -51.93 -0.37 0.18 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.06 1.08 7.84 -51.93 -0.41 0.68 16 28 H 0.29 7.76 8.31 -40.82 -0.34 7.42 16 29 H 0.06 0.91 7.46 -51.93 -0.39 0.52 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.07 0.74 8.05 -51.93 -0.42 0.32 16 32 H 0.07 0.69 6.94 -51.93 -0.36 0.33 16 33 H 0.03 0.36 7.75 -51.93 -0.40 -0.04 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.34 2.73 8.99 -39.29 -0.35 2.38 16 36 H 0.34 2.63 9.08 -39.29 -0.36 2.27 16 LS Contribution 305.47 15.07 4.60 4.60 Total: -1.00 -35.06 305.47 -8.52 -43.58 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -5.52 Total: 3.49 kcal Atomic # 6 Polarization: -25.08 SS G_CDS: -0.23 Total: -25.31 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: 0.22 Total: -54.09 kcal Atomic # 8 Polarization: -59.86 SS G_CDS: -2.01 Total: -61.87 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 74.38 SS G_CDS: -0.56 Total: 73.82 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -35.06 -8.52 -43.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723909463.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.026 kcal (2) G-P(sol) polarization free energy of solvation -35.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds