Wall clock time and date at job start Mon Mar 30 2020 05:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 110.77503 * 2 1 4 4 C 1.54320 * 110.72308 * 236.75787 * 2 1 3 5 5 N 1.47020 * 107.27190 * 263.82885 * 4 2 1 6 6 S 1.65600 * 125.64912 * 181.01888 * 5 4 2 7 7 O 1.42103 * 106.39991 * 336.48643 * 6 5 4 8 8 O 1.42095 * 106.40377 * 203.56427 * 6 5 4 9 9 C 1.76199 * 107.21522 * 90.02248 * 6 5 4 10 10 H 1.08002 * 120.00405 * 0.02562 * 9 6 5 11 11 C 1.37884 * 119.99836 * 179.72073 * 9 6 5 12 12 N 1.31514 * 119.99698 * 0.28505 * 11 9 6 13 13 Si 1.86794 * 119.99837 * 180.27572 * 11 9 6 14 14 H 1.48501 * 109.47188 * 90.00793 * 13 11 9 15 15 H 1.48501 * 109.47085 * 210.00372 * 13 11 9 16 16 H 1.48498 * 109.47634 * 330.00608 * 13 11 9 17 17 C 1.47429 * 108.70261 * 1.28400 * 5 4 2 18 18 C 1.55130 * 104.71927 * 335.55627 * 17 5 4 19 19 H 1.09004 * 111.22241 * 279.16985 * 18 17 5 20 20 C 1.53001 * 110.90385 * 155.27565 * 18 17 5 21 21 C 1.53002 * 109.47131 * 72.97242 * 20 18 17 22 22 N 1.46901 * 109.47025 * 179.97438 * 21 20 18 23 23 H 1.09002 * 109.46805 * 181.79092 * 1 2 3 24 24 H 1.09002 * 109.46678 * 301.78563 * 1 2 3 25 25 H 1.09000 * 109.47110 * 61.79078 * 1 2 3 26 26 H 1.08999 * 109.88688 * 144.40686 * 4 2 1 27 27 H 1.09003 * 109.88021 * 23.24541 * 4 2 1 28 28 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 29 29 H 1.09006 * 110.36075 * 94.48039 * 17 5 4 30 30 H 1.08992 * 110.36725 * 216.80430 * 17 5 4 31 31 H 1.08998 * 109.47059 * 192.96993 * 20 18 17 32 32 H 1.08997 * 109.47088 * 312.97505 * 20 18 17 33 33 H 1.08998 * 109.46946 * 299.99821 * 21 20 18 34 34 H 1.08997 * 109.46919 * 60.00161 * 21 20 18 35 35 H 1.00902 * 111.00011 * 56.04508 * 22 21 20 36 36 H 1.00896 * 111.00020 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0192 0.0000 4 6 2.0761 -0.7912 -1.2072 5 7 2.3717 -2.1531 -0.7388 6 16 3.0025 -3.3753 -1.6612 7 8 2.6848 -3.0643 -3.0109 8 8 2.6195 -4.5909 -1.0329 9 6 4.7567 -3.2773 -1.5277 10 1 5.2099 -2.5087 -0.9191 11 6 5.5507 -4.1857 -2.1952 12 7 4.9988 -5.1218 -2.9359 13 14 7.4101 -4.0865 -2.0475 14 1 7.8602 -4.9131 -0.8988 15 1 8.0336 -4.5934 -3.2963 16 1 7.8149 -2.6745 -1.8299 17 6 2.0076 -2.2524 0.6863 18 6 2.0790 -0.7953 1.2138 19 1 3.1060 -0.5067 1.4380 20 6 1.1816 -0.6138 2.4396 21 6 1.8185 -1.3079 3.6453 22 7 0.9571 -1.1332 4.8223 23 1 -0.3633 -1.0272 0.0321 24 1 -0.3633 0.5413 0.8736 25 1 -0.3633 0.4858 -0.9056 26 1 2.9869 -0.3207 -1.5776 27 1 1.3263 -0.8256 -1.9976 28 1 5.5574 -5.7607 -3.4058 29 1 0.9974 -2.6479 0.7930 30 1 2.7208 -2.8829 1.2170 31 1 1.0663 0.4491 2.6514 32 1 0.2038 -1.0532 2.2422 33 1 1.9338 -2.3709 3.4335 34 1 2.7963 -0.8686 3.8426 35 1 0.0248 -1.4743 4.6419 36 1 1.3561 -1.5833 5.6324 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723909463.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:13 Heat of formation + Delta-G solvation = -134.862212 kcal Electronic energy + Delta-G solvation = -18784.403998 eV Core-core repulsion = 15813.804729 eV Total energy + Delta-G solvation = -2970.599268 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.22360 -37.47671 -36.20484 -36.19457 -35.22631 -33.35674 -31.49367 -28.30500 -27.63808 -27.01852 -23.84662 -22.19485 -20.76398 -20.18661 -19.26032 -18.37085 -17.30581 -16.77251 -16.65895 -16.11249 -15.92503 -15.54439 -15.33778 -14.73915 -14.19643 -14.06457 -13.97231 -13.62012 -13.38661 -13.25069 -13.11181 -13.04263 -12.61139 -12.56438 -12.51601 -12.32999 -12.14943 -11.72967 -11.57281 -11.37344 -11.28784 -11.22536 -11.02533 -9.77667 -9.55960 -8.78196 -7.53439 0.23288 1.30723 1.31647 1.48202 2.17686 2.53282 2.86753 3.47159 3.59547 3.69761 3.79565 4.03719 4.21478 4.31862 4.40489 4.44595 4.51679 4.63914 4.66070 4.71746 4.83812 4.90595 5.00297 5.06928 5.13839 5.16499 5.23292 5.35148 5.39963 5.42600 5.59201 5.82742 5.87270 6.27073 6.64385 6.73204 8.17110 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.024014 B = 0.006443 C = 0.005783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.715593 B = 4344.835490 C = 4840.459206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 H 0.113 0.887 4 C 0.113 3.887 5 N -1.023 6.023 6 S 2.730 3.270 7 O -1.042 7.042 8 O -1.041 7.041 9 C -1.040 5.040 10 H 0.118 0.882 11 C 0.068 3.932 12 N -0.895 5.895 13 Si 0.993 3.007 14 H -0.253 1.253 15 H -0.261 1.261 16 H -0.247 1.247 17 C 0.120 3.880 18 C -0.084 4.084 19 H 0.090 0.910 20 C -0.095 4.095 21 C 0.054 3.946 22 N -0.855 5.855 23 H 0.042 0.958 24 H 0.084 0.916 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.300 0.700 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.020 0.980 34 H 0.071 0.929 35 H 0.345 0.655 36 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.866 11.327 11.984 17.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.105 4.105 3 H 0.131 0.869 4 C -0.012 4.012 5 N -0.862 5.862 6 S 2.834 3.166 7 O -1.032 7.032 8 O -1.032 7.032 9 C -1.174 5.174 10 H 0.136 0.864 11 C -0.145 4.145 12 N -0.527 5.527 13 Si 0.811 3.189 14 H -0.177 1.177 15 H -0.185 1.185 16 H -0.170 1.170 17 C -0.005 4.005 18 C -0.105 4.105 19 H 0.108 0.892 20 C -0.133 4.133 21 C -0.077 4.077 22 N -0.385 5.385 23 H 0.061 0.939 24 H 0.103 0.897 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.110 0.890 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.106 0.894 32 H 0.089 0.911 33 H 0.038 0.962 34 H 0.090 0.910 35 H 0.158 0.842 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.257 11.252 11.198 16.723 hybrid contribution 1.239 -1.466 -0.280 1.940 sum -4.018 9.786 10.919 15.203 Atomic orbital electron populations 1.21867 0.93362 1.01673 1.03093 1.22238 0.97041 0.99426 0.91760 0.86907 1.21974 0.99956 0.81209 0.98070 1.58587 1.80200 1.25526 1.21881 0.99574 0.75986 0.70277 0.70785 1.93288 1.87170 1.84846 1.37887 1.93288 1.85999 1.46071 1.77816 1.30962 1.18374 1.25487 1.42533 0.86378 1.26092 1.08197 0.90794 0.89424 1.69995 1.41266 1.15340 1.26091 0.85095 0.73748 0.80596 0.79510 1.17706 1.18463 1.17044 1.22216 0.99633 0.99069 0.79603 1.22440 1.00964 0.92300 0.94786 0.89186 1.21473 0.98183 1.02328 0.91298 1.21858 0.97207 0.97914 0.90729 1.58765 1.06601 1.66867 1.06290 0.93920 0.89745 0.91953 0.92044 0.92601 0.89006 0.92027 0.92266 0.89359 0.91112 0.96186 0.91024 0.84213 0.83980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 7.91 71.98 0.57 -2.27 16 2 C -0.08 -1.97 3.47 -9.61 -0.03 -2.00 16 3 H 0.11 2.02 8.14 -2.38 -0.02 2.01 16 4 C 0.11 3.85 6.57 86.73 0.57 4.42 16 5 N -1.02 -43.14 3.70 -506.01 -1.87 -45.01 16 6 S 2.73 154.05 5.22 -56.49 -0.29 153.75 16 7 O -1.04 -64.92 17.60 -128.00 -2.25 -67.17 16 8 O -1.04 -64.70 17.60 -128.00 -2.25 -66.95 16 9 C -1.04 -59.05 9.75 67.74 0.66 -58.39 16 10 H 0.12 6.07 7.81 -2.91 -0.02 6.04 16 11 C 0.07 3.84 5.46 84.66 0.46 4.30 16 12 N -0.90 -54.63 13.19 21.45 0.28 -54.35 16 13 Si 0.99 41.86 29.54 68.60 2.03 43.89 16 14 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16 15 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 16 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 17 C 0.12 4.07 5.62 86.93 0.49 4.56 16 18 C -0.08 -2.02 2.89 -9.33 -0.03 -2.05 16 19 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 20 C -0.09 -1.73 3.81 30.60 0.12 -1.62 16 21 C 0.05 1.01 6.69 86.30 0.58 1.59 16 22 N -0.86 -13.63 9.62 -186.72 -1.80 -15.43 16 23 H 0.04 0.98 7.32 -2.39 -0.02 0.96 16 24 H 0.08 1.26 7.12 -2.39 -0.02 1.24 16 25 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.06 1.95 7.84 -2.39 -0.02 1.93 16 28 H 0.30 16.34 8.31 -92.70 -0.77 15.57 16 29 H 0.06 2.00 7.46 -2.38 -0.02 1.98 16 30 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.09 1.42 8.05 -2.39 -0.02 1.40 16 32 H 0.07 1.26 6.94 -2.39 -0.02 1.24 16 33 H 0.02 0.42 7.75 -2.39 -0.02 0.40 16 34 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.35 4.76 8.99 -89.69 -0.81 3.95 16 36 H 0.35 4.67 9.08 -89.70 -0.81 3.85 16 Total: -1.00 -78.04 305.47 -3.31 -81.36 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: -0.54 Total: 21.37 kcal Atomic # 6 Polarization: -54.84 SS G_CDS: 3.38 Total: -51.45 kcal Atomic # 7 Polarization: -111.41 SS G_CDS: -3.38 Total: -114.79 kcal Atomic # 8 Polarization: -129.61 SS G_CDS: -4.51 Total: -134.12 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Atomic # 16 Polarization: 154.05 SS G_CDS: -0.29 Total: 153.75 kcal Total: -78.04 -3.31 -81.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723909463.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.507 kcal (2) G-P(sol) polarization free energy of solvation -78.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds