Wall clock time and date at job start Mon Mar 30 2020 05:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 110.88719 * 2 1 4 4 C 1.55129 * 110.90852 * 124.10194 * 2 1 3 5 5 N 1.47422 * 104.72131 * 155.27490 * 4 2 1 6 6 S 1.65606 * 125.64703 * 155.81911 * 5 4 2 7 7 O 1.42098 * 106.40170 * 156.15121 * 6 5 4 8 8 O 1.42094 * 106.40170 * 23.22519 * 6 5 4 9 9 C 1.76203 * 107.21543 * 269.68648 * 6 5 4 10 10 H 1.08002 * 119.99745 * 0.02562 * 9 6 5 11 11 C 1.37871 * 120.00108 * 180.02562 * 9 6 5 12 12 N 1.31514 * 120.00147 * 0.02562 * 11 9 6 13 13 Si 1.86803 * 120.00278 * 180.02562 * 11 9 6 14 14 H 1.48494 * 109.47228 * 179.97438 * 13 11 9 15 15 H 1.48501 * 109.46793 * 300.00001 * 13 11 9 16 16 H 1.48500 * 109.47000 * 60.00094 * 13 11 9 17 17 C 1.47021 * 108.70464 * 335.54715 * 5 4 2 18 18 C 1.54321 * 107.26956 * 1.29131 * 17 5 4 19 19 H 1.09000 * 110.71732 * 263.82544 * 18 17 5 20 20 C 1.53007 * 110.71806 * 140.73099 * 18 17 5 21 21 C 1.53003 * 109.46784 * 66.45341 * 20 18 17 22 22 N 1.46900 * 109.46463 * 179.97438 * 21 20 18 23 23 H 1.09003 * 109.46915 * 183.88161 * 1 2 3 24 24 H 1.09003 * 109.46874 * 303.87710 * 1 2 3 25 25 H 1.08998 * 109.47306 * 63.87863 * 1 2 3 26 26 H 1.09000 * 110.49834 * 36.42781 * 4 2 1 27 27 H 1.09002 * 110.34075 * 274.03538 * 4 2 1 28 28 H 0.97005 * 119.99661 * 359.97438 * 12 11 9 29 29 H 1.09002 * 109.87911 * 120.70466 * 17 5 4 30 30 H 1.08998 * 109.88313 * 241.87307 * 17 5 4 31 31 H 1.09006 * 109.46607 * 186.45278 * 20 18 17 32 32 H 1.08991 * 109.47410 * 306.45144 * 20 18 17 33 33 H 1.08996 * 109.47342 * 299.99920 * 21 20 18 34 34 H 1.09000 * 109.46785 * 59.99888 * 21 20 18 35 35 H 1.00900 * 111.00369 * 56.05286 * 22 21 20 36 36 H 1.00906 * 110.99528 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0836 -0.8125 1.1999 5 7 3.4272 -1.2434 0.7726 6 16 4.6811 -1.6353 1.7808 7 8 5.5389 -2.4922 1.0399 8 8 4.0973 -2.0044 3.0226 9 6 5.5920 -0.1567 2.0793 10 1 5.2792 0.7714 1.6240 11 6 6.7039 -0.1846 2.8940 12 7 7.0851 -1.3148 3.4479 13 14 7.6691 1.3830 3.2110 14 1 8.8107 1.0875 4.1135 15 1 8.1808 1.9180 1.9237 16 1 6.7827 2.3898 3.8481 17 6 3.4674 -1.2739 -0.6967 18 6 2.0861 -0.8074 -1.2026 19 1 1.4468 -1.6626 -1.4217 20 6 2.2347 0.0851 -2.4365 21 6 2.7826 -0.7421 -3.6012 22 7 2.9246 0.1147 -4.7859 23 1 -0.3633 -1.0253 0.0696 24 1 -0.3633 0.5729 0.8532 25 1 -0.3634 0.4524 -0.9227 26 1 1.4524 -1.6788 1.3980 27 1 2.1517 -0.1811 2.0859 28 1 6.5836 -2.1288 3.2836 29 1 4.2425 -0.5993 -1.0603 30 1 3.6650 -2.2890 -1.0411 31 1 1.2616 0.4947 -2.7078 32 1 2.9230 0.9004 -2.2144 33 1 3.7555 -1.1518 -3.3299 34 1 2.0941 -1.5575 -3.8232 35 1 3.5071 0.9141 -4.5864 36 1 3.2856 -0.4087 -5.5695 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723909664.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:20 Heat of formation + Delta-G solvation = -110.130328 kcal Electronic energy + Delta-G solvation = -18760.870482 eV Core-core repulsion = 15791.343669 eV Total energy + Delta-G solvation = -2969.526813 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.93962 -35.56954 -35.31528 -34.40147 -33.23883 -32.27466 -30.86957 -26.52472 -25.74032 -25.41993 -22.85759 -20.60489 -19.98528 -19.29294 -17.78404 -16.41757 -15.95182 -15.84752 -14.85639 -14.63354 -14.40693 -14.07881 -13.91355 -13.53190 -13.32521 -12.84123 -12.55224 -12.51574 -12.12465 -11.96132 -11.64694 -11.22349 -11.10574 -11.01808 -10.70793 -10.65287 -10.57030 -10.42192 -10.40586 -10.31304 -10.23190 -9.20122 -8.85191 -8.79335 -8.11506 -7.19136 -5.40486 2.03795 3.21454 3.22042 3.43642 4.12041 4.29513 4.40695 4.58125 4.71016 4.77139 4.88464 5.15584 5.27013 5.38282 5.50020 5.53906 5.58984 5.61728 5.69787 5.78186 5.84966 5.95311 6.03738 6.08762 6.10016 6.18263 6.25638 6.33050 6.51563 6.76133 6.95358 7.25008 7.28758 7.60798 8.03349 8.60693 10.18019 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.021300 B = 0.006573 C = 0.006022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.230368 B = 4258.768872 C = 4648.408332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.100 4.100 3 H 0.085 0.915 4 C 0.130 3.870 5 N -1.017 6.017 6 S 2.704 3.296 7 O -1.009 7.009 8 O -1.008 7.008 9 C -1.084 5.084 10 H 0.102 0.898 11 C 0.089 3.911 12 N -0.845 5.845 13 Si 1.080 2.920 14 H -0.271 1.271 15 H -0.276 1.276 16 H -0.275 1.275 17 C 0.130 3.870 18 C -0.093 4.093 19 H 0.082 0.918 20 C -0.106 4.106 21 C 0.055 3.945 22 N -0.854 5.854 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.275 0.725 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.033 0.967 34 H 0.071 0.929 35 H 0.340 0.660 36 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.137 4.520 -11.170 15.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.120 4.120 3 H 0.103 0.897 4 C 0.004 3.996 5 N -0.852 5.852 6 S 2.807 3.193 7 O -0.999 6.999 8 O -0.998 6.998 9 C -1.218 5.218 10 H 0.120 0.880 11 C -0.129 4.129 12 N -0.474 5.474 13 Si 0.903 3.097 14 H -0.195 1.195 15 H -0.201 1.201 16 H -0.201 1.201 17 C 0.003 3.997 18 C -0.114 4.114 19 H 0.101 0.899 20 C -0.144 4.144 21 C -0.076 4.076 22 N -0.383 5.383 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.051 0.949 34 H 0.089 0.911 35 H 0.152 0.848 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.424 4.225 -9.931 14.328 hybrid contribution -0.186 -0.225 -0.863 0.911 sum -9.610 4.000 -10.795 14.996 Atomic orbital electron populations 1.21707 0.94292 1.01991 1.01766 1.22467 0.95539 0.99580 0.94366 0.89673 1.21922 0.83389 0.97389 0.96924 1.58819 1.25270 1.85463 1.15679 1.00675 0.71316 0.75960 0.71307 1.93406 1.65149 1.68261 1.73116 1.93412 1.78524 1.84975 1.42913 1.31509 1.28041 1.17144 1.45156 0.88000 1.25997 0.94005 1.03894 0.89027 1.70859 1.39231 0.99957 1.37325 0.83447 0.76139 0.72737 0.77394 1.19539 1.20130 1.20070 1.21621 0.96869 1.00604 0.80557 1.22294 0.96409 0.98346 0.94305 0.89932 1.21556 1.02007 0.97908 0.92942 1.21884 0.99773 0.95718 0.90187 1.58781 1.59260 1.12519 1.07755 0.92487 0.92376 0.92392 0.92245 0.90812 0.91252 0.92049 0.92159 0.90883 0.91674 0.94877 0.91082 0.84783 0.84853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.31 37.16 0.35 -1.08 16 2 C -0.10 -1.30 3.11 -88.35 -0.27 -1.58 16 3 H 0.08 1.12 8.05 -51.93 -0.42 0.70 16 4 C 0.13 2.22 6.45 -2.41 -0.02 2.21 16 5 N -1.02 -21.13 3.70 -111.29 -0.41 -21.54 16 6 S 2.70 72.85 4.58 -107.50 -0.49 72.35 16 7 O -1.01 -29.50 17.22 -57.17 -0.98 -30.49 16 8 O -1.01 -29.49 17.22 -57.17 -0.98 -30.48 16 9 C -1.08 -30.49 9.75 30.60 0.30 -30.19 16 10 H 0.10 2.65 7.81 -52.49 -0.41 2.24 16 11 C 0.09 2.57 5.46 -17.82 -0.10 2.47 16 12 N -0.84 -26.17 13.66 55.43 0.76 -25.42 16 13 Si 1.08 24.18 29.90 -169.99 -5.08 19.10 16 14 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 15 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 16 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 17 C 0.13 2.22 5.73 -3.07 -0.02 2.21 16 18 C -0.09 -1.19 2.44 -88.78 -0.22 -1.41 16 19 H 0.08 0.97 8.04 -51.93 -0.42 0.55 16 20 C -0.11 -1.16 4.87 -26.73 -0.13 -1.29 16 21 C 0.05 0.58 6.63 -3.82 -0.03 0.55 16 22 N -0.85 -8.02 9.62 -10.37 -0.10 -8.12 16 23 H 0.06 0.56 8.07 -51.93 -0.42 0.14 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.95 7.99 -51.93 -0.41 0.54 16 27 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 28 H 0.28 8.79 6.52 -40.82 -0.27 8.52 16 29 H 0.06 1.05 7.76 -51.93 -0.40 0.65 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.75 8.06 -51.93 -0.42 0.33 16 33 H 0.03 0.37 7.49 -51.93 -0.39 -0.02 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.34 2.94 8.99 -39.29 -0.35 2.59 16 36 H 0.34 2.66 9.08 -39.29 -0.36 2.30 16 LS Contribution 307.70 15.07 4.64 4.64 Total: -1.00 -34.99 307.70 -8.39 -43.39 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -5.60 Total: 4.69 kcal Atomic # 6 Polarization: -27.98 SS G_CDS: -0.13 Total: -28.12 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: 0.25 Total: -55.08 kcal Atomic # 8 Polarization: -59.00 SS G_CDS: -1.97 Total: -60.96 kcal Atomic # 14 Polarization: 24.18 SS G_CDS: -5.08 Total: 19.10 kcal Atomic # 16 Polarization: 72.85 SS G_CDS: -0.49 Total: 72.35 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.99 -8.39 -43.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723909664.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.742 kcal (2) G-P(sol) polarization free energy of solvation -34.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds