Wall clock time and date at job start Mon Mar 30 2020 05:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 110.88719 * 2 1 4 4 C 1.55129 * 110.90852 * 124.10194 * 2 1 3 5 5 N 1.47422 * 104.72131 * 155.27490 * 4 2 1 6 6 S 1.65606 * 125.64703 * 155.81911 * 5 4 2 7 7 O 1.42098 * 106.40170 * 156.15121 * 6 5 4 8 8 O 1.42094 * 106.40170 * 23.22519 * 6 5 4 9 9 C 1.76203 * 107.21543 * 269.68648 * 6 5 4 10 10 H 1.08002 * 119.99745 * 0.02562 * 9 6 5 11 11 C 1.37871 * 120.00108 * 180.02562 * 9 6 5 12 12 N 1.31514 * 120.00147 * 0.02562 * 11 9 6 13 13 Si 1.86803 * 120.00278 * 180.02562 * 11 9 6 14 14 H 1.48494 * 109.47228 * 179.97438 * 13 11 9 15 15 H 1.48501 * 109.46793 * 300.00001 * 13 11 9 16 16 H 1.48500 * 109.47000 * 60.00094 * 13 11 9 17 17 C 1.47021 * 108.70464 * 335.54715 * 5 4 2 18 18 C 1.54321 * 107.26956 * 1.29131 * 17 5 4 19 19 H 1.09000 * 110.71732 * 263.82544 * 18 17 5 20 20 C 1.53007 * 110.71806 * 140.73099 * 18 17 5 21 21 C 1.53003 * 109.46784 * 66.45341 * 20 18 17 22 22 N 1.46900 * 109.46463 * 179.97438 * 21 20 18 23 23 H 1.09003 * 109.46915 * 183.88161 * 1 2 3 24 24 H 1.09003 * 109.46874 * 303.87710 * 1 2 3 25 25 H 1.08998 * 109.47306 * 63.87863 * 1 2 3 26 26 H 1.09000 * 110.49834 * 36.42781 * 4 2 1 27 27 H 1.09002 * 110.34075 * 274.03538 * 4 2 1 28 28 H 0.97005 * 119.99661 * 359.97438 * 12 11 9 29 29 H 1.09002 * 109.87911 * 120.70466 * 17 5 4 30 30 H 1.08998 * 109.88313 * 241.87307 * 17 5 4 31 31 H 1.09006 * 109.46607 * 186.45278 * 20 18 17 32 32 H 1.08991 * 109.47410 * 306.45144 * 20 18 17 33 33 H 1.08996 * 109.47342 * 299.99920 * 21 20 18 34 34 H 1.09000 * 109.46785 * 59.99888 * 21 20 18 35 35 H 1.00900 * 111.00369 * 56.05286 * 22 21 20 36 36 H 1.00906 * 110.99528 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0836 -0.8125 1.1999 5 7 3.4272 -1.2434 0.7726 6 16 4.6811 -1.6353 1.7808 7 8 5.5389 -2.4922 1.0399 8 8 4.0973 -2.0044 3.0226 9 6 5.5920 -0.1567 2.0793 10 1 5.2792 0.7714 1.6240 11 6 6.7039 -0.1846 2.8940 12 7 7.0851 -1.3148 3.4479 13 14 7.6691 1.3830 3.2110 14 1 8.8107 1.0875 4.1135 15 1 8.1808 1.9180 1.9237 16 1 6.7827 2.3898 3.8481 17 6 3.4674 -1.2739 -0.6967 18 6 2.0861 -0.8074 -1.2026 19 1 1.4468 -1.6626 -1.4217 20 6 2.2347 0.0851 -2.4365 21 6 2.7826 -0.7421 -3.6012 22 7 2.9246 0.1147 -4.7859 23 1 -0.3633 -1.0253 0.0696 24 1 -0.3633 0.5729 0.8532 25 1 -0.3634 0.4524 -0.9227 26 1 1.4524 -1.6788 1.3980 27 1 2.1517 -0.1811 2.0859 28 1 6.5836 -2.1288 3.2836 29 1 4.2425 -0.5993 -1.0603 30 1 3.6650 -2.2890 -1.0411 31 1 1.2616 0.4947 -2.7078 32 1 2.9230 0.9004 -2.2144 33 1 3.7555 -1.1518 -3.3299 34 1 2.0941 -1.5575 -3.8232 35 1 3.5071 0.9141 -4.5864 36 1 3.2856 -0.4087 -5.5695 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723909664.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:20 Heat of formation + Delta-G solvation = -138.996575 kcal Electronic energy + Delta-G solvation = -18762.122217 eV Core-core repulsion = 15791.343669 eV Total energy + Delta-G solvation = -2970.778548 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.16379 -37.79835 -36.64696 -36.26232 -35.41941 -33.54332 -31.86272 -27.84101 -27.63897 -26.73096 -23.95930 -21.74562 -21.38812 -21.05992 -19.63556 -18.33348 -17.38535 -16.91353 -16.68304 -16.19248 -15.79171 -15.43485 -15.35238 -14.89352 -14.73761 -14.32665 -13.94925 -13.72305 -13.56762 -13.14237 -13.05062 -12.87440 -12.81031 -12.79721 -12.74383 -12.25835 -12.02981 -11.99824 -11.57868 -11.55483 -11.27437 -11.24273 -10.82351 -9.88588 -9.60627 -9.44303 -7.70591 -0.00151 1.41849 1.46186 1.72905 2.28707 2.52132 2.53248 3.37459 3.40959 3.49251 3.63258 3.95251 4.10630 4.20976 4.29869 4.42277 4.43947 4.51652 4.57835 4.63871 4.73872 4.80256 4.90741 4.95400 5.08378 5.15559 5.24568 5.27647 5.39847 5.41861 5.51018 5.66538 5.72042 6.22646 6.42109 6.59431 7.87454 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.021300 B = 0.006573 C = 0.006022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.230368 B = 4258.768872 C = 4648.408332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.088 4.088 3 H 0.087 0.913 4 C 0.114 3.886 5 N -1.018 6.018 6 S 2.708 3.292 7 O -1.043 7.043 8 O -1.041 7.041 9 C -1.099 5.099 10 H 0.119 0.881 11 C 0.034 3.966 12 N -0.875 5.875 13 Si 1.121 2.879 14 H -0.266 1.266 15 H -0.249 1.249 16 H -0.249 1.249 17 C 0.117 3.883 18 C -0.079 4.079 19 H 0.100 0.900 20 C -0.097 4.097 21 C 0.055 3.945 22 N -0.856 5.856 23 H 0.061 0.939 24 H 0.064 0.936 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.255 0.745 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.090 0.910 32 H 0.060 0.940 33 H 0.019 0.981 34 H 0.077 0.923 35 H 0.344 0.656 36 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.602 6.641 -12.737 18.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.108 4.108 3 H 0.106 0.894 4 C -0.011 4.011 5 N -0.858 5.858 6 S 2.813 3.187 7 O -1.033 7.033 8 O -1.032 7.032 9 C -1.233 5.233 10 H 0.137 0.863 11 C -0.176 4.176 12 N -0.505 5.505 13 Si 0.934 3.066 14 H -0.190 1.190 15 H -0.173 1.173 16 H -0.173 1.173 17 C -0.008 4.008 18 C -0.099 4.099 19 H 0.118 0.882 20 C -0.136 4.136 21 C -0.076 4.076 22 N -0.386 5.386 23 H 0.080 0.920 24 H 0.083 0.917 25 H 0.098 0.902 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.108 0.892 32 H 0.079 0.921 33 H 0.037 0.963 34 H 0.096 0.904 35 H 0.157 0.843 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -10.909 6.329 -11.516 17.079 hybrid contribution 0.187 -0.915 -0.445 1.035 sum -10.722 5.414 -11.961 16.951 Atomic orbital electron populations 1.21696 0.91480 1.02790 1.03238 1.22460 0.97615 0.98776 0.91986 0.89449 1.22327 0.81720 0.98403 0.98648 1.58345 1.25234 1.85319 1.16862 1.00101 0.71771 0.75709 0.71111 1.93347 1.67004 1.69300 1.73639 1.93354 1.79171 1.85482 1.45150 1.31894 1.28242 1.18304 1.44888 0.86268 1.27906 0.95281 1.06315 0.88136 1.71012 1.39886 1.00163 1.39450 0.83070 0.75498 0.69119 0.78939 1.19016 1.17319 1.17264 1.21966 0.99900 1.00623 0.78280 1.22283 0.93554 0.99254 0.94851 0.88211 1.21489 1.02837 0.97269 0.91963 1.21851 0.99217 0.95994 0.90513 1.58781 1.59557 1.12630 1.07599 0.91970 0.91728 0.90232 0.91295 0.91897 0.93455 0.92463 0.92683 0.89152 0.92137 0.96299 0.90412 0.84326 0.83877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 9.31 71.98 0.67 -1.57 16 2 C -0.09 -2.08 3.11 -9.32 -0.03 -2.11 16 3 H 0.09 2.05 8.05 -2.39 -0.02 2.03 16 4 C 0.11 3.81 6.45 86.93 0.56 4.37 16 5 N -1.02 -42.51 3.70 -506.02 -1.87 -44.38 16 6 S 2.71 150.20 4.58 -56.49 -0.26 149.94 16 7 O -1.04 -63.33 17.22 -128.00 -2.20 -65.53 16 8 O -1.04 -63.20 17.22 -128.00 -2.20 -65.40 16 9 C -1.10 -62.39 9.75 67.73 0.66 -61.73 16 10 H 0.12 6.14 7.81 -2.91 -0.02 6.11 16 11 C 0.03 1.95 5.46 84.65 0.46 2.42 16 12 N -0.87 -55.69 13.66 21.45 0.29 -55.40 16 13 Si 1.12 47.24 29.90 68.60 2.05 49.29 16 14 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 15 H -0.25 -9.40 7.11 99.48 0.71 -8.70 16 16 H -0.25 -9.39 7.11 99.48 0.71 -8.68 16 17 C 0.12 3.97 5.73 86.73 0.50 4.46 16 18 C -0.08 -1.83 2.44 -9.60 -0.02 -1.85 16 19 H 0.10 2.02 8.04 -2.39 -0.02 2.00 16 20 C -0.10 -1.85 4.87 30.60 0.15 -1.70 16 21 C 0.06 1.03 6.63 86.30 0.57 1.60 16 22 N -0.86 -14.04 9.62 -186.72 -1.80 -15.84 16 23 H 0.06 1.00 8.07 -2.39 -0.02 0.98 16 24 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.07 2.15 7.99 -2.39 -0.02 2.13 16 27 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.25 16.99 6.52 -92.70 -0.60 16.39 16 29 H 0.06 1.95 7.76 -2.39 -0.02 1.93 16 30 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.06 1.23 8.06 -2.39 -0.02 1.21 16 33 H 0.02 0.40 7.49 -2.39 -0.02 0.38 16 34 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.34 5.20 8.99 -89.69 -0.81 4.39 16 36 H 0.35 4.73 9.08 -89.69 -0.81 3.92 16 Total: -1.00 -77.83 307.70 -2.85 -80.67 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: -0.38 Total: 22.76 kcal Atomic # 6 Polarization: -59.63 SS G_CDS: 3.52 Total: -56.11 kcal Atomic # 7 Polarization: -112.25 SS G_CDS: -3.37 Total: -115.62 kcal Atomic # 8 Polarization: -126.52 SS G_CDS: -4.41 Total: -130.93 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.05 Total: 49.29 kcal Atomic # 16 Polarization: 150.20 SS G_CDS: -0.26 Total: 149.94 kcal Total: -77.83 -2.85 -80.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723909664.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.322 kcal (2) G-P(sol) polarization free energy of solvation -77.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds